genome.fa.s17.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  143  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44225453--44225506	26	2.1	26	96	0	99	22	20	29	27	1.98
44225352--44225580	102	2.2	102	96	0	413	19	22	27	31	1.98
44225479--44225695	76	2.8	77	88	6	305	23	20	25	30	1.98
44228132--44228175	22	1.9	24	90	9	74	25	20	0	54	1.45
44228545--44228573	15	1.9	15	100	0	58	0	10	6	82	0.83
44228752--44228809	17	3.4	16	78	19	64	58	0	0	41	0.98
44228749--44228809	5	12.6	5	75	25	60	59	0	0	40	0.98
44231508--44231605	46	2.1	46	98	0	187	34	9	18	37	1.83
44236297--44236335	19	2.1	19	100	0	78	20	17	25	35	1.95
44239697--44239739	21	2.1	20	91	4	68	72	4	2	20	1.14
44241456--44241496	17	2.5	16	88	4	55	68	4	2	24	1.22
44241555--44241723	89	1.9	90	83	2	223	28	15	18	37	1.91
44243955--44244088	42	3.2	42	84	4	155	17	21	15	45	1.85
44243993--44244105	21	5.5	21	73	2	95	15	23	19	42	1.88
44250827--44250960	42	3.2	41	77	10	137	17	21	17	43	1.88
44250827--44250960	21	6.4	21	70	6	83	17	21	17	43	1.88
44253352--44253498	47	3.1	47	90	2	233	55	0	8	36	1.30
44253334--44253507	93	1.9	94	86	3	244	54	0	8	37	1.30
44253494--44253540	21	2.1	21	84	7	58	57	2	0	40	1.11
44253623--44253684	24	2.6	23	89	7	88	54	3	4	37	1.38
44255701--44255742	23	1.9	22	85	9	59	52	4	4	38	1.44
44256679--44256741	30	2.1	30	93	0	108	25	3	12	58	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44260835--44260895	32	1.9	32	93	0	104	54	6	9	29	1.59
44260835--44260892	11	5.4	11	77	8	57	53	6	8	31	1.58
44262276--44262318	22	1.9	23	85	4	61	39	2	11	46	1.53
44270623--44270661	12	3.3	12	86	13	55	61	0	2	35	1.10
44270638--44270730	22	4.4	22	69	22	65	61	0	4	34	1.16
44270614--44270746	26	5.1	28	72	17	92	62	0	3	33	1.13
44270628--44270755	17	7.1	17	70	17	73	61	0	3	35	1.12
44275471--44275495	13	1.9	13	100	0	50	28	8	0	64	1.22
44282204--44282234	12	2.7	11	90	9	53	0	16	3	80	0.83
44283233--44283276	21	2.1	21	95	0	79	29	13	4	52	1.60
44285627--44285731	51	2.1	51	87	0	147	59	5	3	31	1.39
44285656--44285801	70	2.1	70	85	2	195	58	4	4	32	1.38
44285724--44285758	15	2.4	15	85	4	54	68	0	0	31	0.90
44285766--44285843	19	4.1	19	83	3	93	58	1	1	38	1.14
44285784--44285864	19	4.2	20	79	9	96	62	0	0	37	0.95
44285766--44285920	39	4.2	39	71	18	141	57	1	3	36	1.28
44285691--44285920	109	2.1	109	94	0	397	57	2	4	35	1.32
44285832--44285867	15	2.5	15	86	4	56	66	0	0	33	0.92
44285832--44285865	14	2.3	15	90	5	52	64	0	0	35	0.94
44285956--44285989	17	2.0	17	88	0	50	50	2	14	32	1.58
44286852--44286886	12	2.6	14	91	8	56	25	2	2	68	1.17
44287375--44287422	24	2.0	24	91	0	78	70	0	16	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44296097--44296122	3	8.7	3	100	0	52	34	34	0	30	1.58
44305820--44305851	16	2.0	16	93	0	55	50	3	6	40	1.43
44313060--44313124	25	2.4	27	77	12	71	56	1	3	38	1.24
44315328--44315369	18	2.3	18	80	8	50	30	0	4	64	1.14
44332043--44332072	15	2.1	15	93	6	53	50	23	0	26	1.50
44332567--44332664	47	2.1	47	96	0	178	35	4	33	26	1.76
44332959--44332989	16	1.9	16	93	0	53	38	3	6	51	1.44
44333064--44333111	25	1.9	25	100	0	96	47	8	4	39	1.53
44333177--44333201	8	3.1	8	100	0	50	24	12	0	64	1.27
44336358--44336490	13	10.2	13	76	12	103	52	4	3	39	1.40
44336326--44336424	27	3.7	27	80	6	105	53	5	4	37	1.42
44336358--44336452	39	2.4	40	87	1	129	53	4	4	37	1.40
44338145--44338224	38	2.1	39	97	2	153	55	25	5	15	1.60
44338183--44338250	30	2.3	30	87	5	102	57	25	4	13	1.54
44372894--44372983	37	2.4	37	82	12	103	41	3	3	52	1.34
44374878--44374977	40	2.4	41	93	3	166	28	23	20	29	1.98
44378038--44378084	21	2.2	22	85	11	71	21	21	34	23	1.97
44378047--44378092	21	2.2	21	88	0	65	21	19	32	26	1.97
44379519--44379568	23	2.2	23	100	0	100	30	20	34	16	1.94
44380702--44380770	29	2.4	29	100	0	138	18	39	23	18	1.93
44382199--44382391	50	3.8	50	92	0	305	21	31	22	24	1.98
44382729--44382786	30	1.9	30	82	6	73	29	20	10	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44386897--44386929	15	2.1	16	88	5	50	30	6	0	63	1.18
44389530--44389713	43	4.3	43	76	7	169	33	29	15	21	1.94
44389511--44389715	86	2.4	85	80	5	236	31	30	15	22	1.95
44396479--44396520	16	2.5	17	92	7	68	45	0	0	54	0.99
44396657--44396709	14	3.7	14	82	9	63	33	47	0	18	1.49
44396671--44396754	21	4.1	20	68	17	64	36	38	1	23	1.63
44396720--44396808	7	12.6	7	75	2	70	47	29	1	22	1.59
44396783--44396833	22	2.3	23	77	16	63	45	25	1	27	1.64
44397179--44397345	41	4.1	41	90	2	248	31	29	21	17	1.96
44398720--44398770	22	2.2	24	77	22	56	35	0	3	60	1.15
44398924--44399000	14	5.0	15	71	20	52	42	14	9	33	1.77
44398940--44398979	20	2.0	20	90	0	62	50	12	10	27	1.72
44398928--44398994	34	1.9	35	90	3	109	46	13	8	31	1.74
44401018--44401060	11	4.0	11	84	6	61	20	46	4	27	1.71
44401017--44401059	21	2.0	21	90	4	68	20	46	2	30	1.63
44406359--44406407	23	2.1	23	96	0	89	32	16	10	40	1.82
44407130--44407183	11	4.8	12	80	15	62	24	31	1	42	1.65
44407130--44407218	11	8.4	11	67	19	55	23	30	2	43	1.66
44407143--44407242	51	2.0	51	90	4	157	25	27	2	46	1.64
44407145--44407253	51	2.1	51	85	6	141	28	23	1	45	1.63
44407240--44407279	15	2.6	16	88	8	64	42	0	0	57	0.98
44407240--44407289	15	3.5	14	79	20	59	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44409660--44409711	22	2.4	22	90	3	79	46	28	0	25	1.53
44409645--44409769	57	2.2	57	91	1	196	43	32	0	24	1.60
44409710--44409774	22	3.0	22	90	2	105	43	30	1	24	1.64
44409732--44409803	29	2.6	27	80	13	83	41	29	1	27	1.64
44409787--44409833	13	3.6	13	83	8	60	34	40	0	25	1.56
44412945--44413515	252	2.3	252	88	2	853	29	21	17	31	1.96
44412945--44413515	127	4.5	127	89	0	817	29	21	17	31	1.96
44429753--44429817	29	2.1	33	81	13	77	1	27	1	69	1.07
44435474--44435524	20	2.4	22	77	9	61	37	3	1	56	1.29
44435927--44436017	44	2.1	44	87	0	128	49	3	6	40	1.45
44435627--44436096	256	1.8	254	83	7	619	48	7	6	36	1.58
44455085--44455154	31	2.3	30	75	7	70	48	21	7	22	1.74
44455190--44455229	21	1.9	21	94	0	71	25	15	27	32	1.95
44457614--44457907	143	2.0	145	90	2	468	39	10	9	40	1.72
44458546--44458570	3	8.3	3	100	0	50	32	0	0	68	0.90
44460182--44460273	30	3.2	30	64	14	84	31	6	6	55	1.51
44460185--44460275	26	3.3	26	65	14	74	31	6	6	54	1.52
44460184--44460276	27	3.2	31	64	14	88	31	6	6	55	1.50
44460169--44460283	57	2.0	57	100	0	230	31	8	6	53	1.58
44460195--44460286	30	3.2	30	64	14	84	30	7	8	53	1.60
44463098--44463127	13	2.3	13	94	0	51	66	23	10	0	1.21
44464061--44464093	12	2.8	12	86	4	50	30	3	0	66	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44464700--44464809	41	2.7	39	81	13	109	30	20	28	20	1.97
44464715--44464809	41	2.3	40	89	5	138	32	22	26	18	1.97
44464888--44465069	83	2.2	81	87	5	258	17	23	30	29	1.97
44464888--44465068	41	4.4	41	88	5	258	17	23	29	29	1.97
44465208--44465341	66	2.0	66	98	0	259	45	5	8	40	1.58
44465848--44465919	20	3.6	19	75	12	65	44	2	2	50	1.31
44465854--44465913	10	5.8	10	76	11	50	46	1	3	48	1.28
44469707--44470055	42	8.3	42	89	2	479	22	18	32	26	1.97
44470897--44471007	41	2.7	42	94	4	199	29	27	20	21	1.98
44473587--44473661	19	3.8	20	70	20	61	46	4	0	49	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185