genome.fa.s17.2.7.7.80.10.50.1000.173.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  173  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52552317--52552354	7	5.4	7	100	0	76	44	13	0	42	1.43
52552555--52552581	2	13.5	2	100	0	54	51	48	0	0	1.00
52557998--52558060	19	3.4	19	72	23	62	55	1	0	42	1.09
52558010--52558092	28	2.9	26	76	15	76	60	2	2	34	1.23
52565789--52565866	32	2.4	33	79	10	90	24	25	34	15	1.95
52568150--52568187	18	2.1	18	100	0	76	10	44	10	34	1.73
52568979--52569019	3	13.7	3	100	0	82	68	31	0	0	0.90
52569086--52569124	20	2.0	21	85	10	55	66	10	0	23	1.22
52569275--52569349	27	2.8	27	93	4	125	16	29	29	25	1.96
52570005--52570046	5	8.6	5	94	5	77	38	0	0	61	0.96
52570544--52570578	17	2.1	17	88	0	52	34	2	0	62	1.10
52575867--52575898	12	2.6	13	85	14	50	31	18	0	50	1.48
52577010--52577069	21	2.8	21	87	7	86	30	28	26	15	1.96
52576997--52577069	20	3.5	21	83	9	87	34	27	23	15	1.94
52576996--52577082	23	4.0	23	79	13	87	33	25	22	18	1.97
52578003--52578050	22	2.2	22	85	7	62	0	22	8	68	1.16
52578096--52578142	3	15.7	3	84	8	60	59	0	0	40	0.97
52578101--52578144	22	2.0	22	86	8	63	56	0	0	43	0.99
52578098--52578148	24	2.1	24	88	3	75	54	0	0	45	0.99
52578274--52578338	30	2.3	27	86	7	85	41	0	0	58	0.98
52578286--52578338	27	2.1	26	86	10	74	43	0	0	56	0.99
52578279--52578330	16	3.4	16	75	25	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52581939--52581970	2	15.5	2	93	6	55	46	0	3	50	1.17
52586251--52586301	21	2.4	21	78	15	61	56	1	5	35	1.35
52586261--52586299	19	2.0	21	90	10	64	56	2	5	35	1.35
52588633--52588709	29	2.6	29	83	4	91	46	14	14	24	1.81
52595742--52595789	24	2.0	24	88	8	71	52	10	10	27	1.68
52604566--52604646	40	2.0	40	95	0	144	29	19	13	37	1.90
52606289--52606599	112	2.8	110	86	2	428	32	20	15	31	1.94
52607218--52607281	3	21.0	3	74	3	56	57	6	4	31	1.44
52611175--52611257	41	2.0	41	97	0	157	31	21	24	22	1.98
52612354--52612439	42	2.0	42	97	0	163	38	15	9	37	1.79
52612730--52612763	7	5.0	7	89	7	52	82	0	0	17	0.67
52612737--52612763	13	2.1	13	100	0	54	85	0	0	14	0.61
52613853--52613879	11	2.5	11	100	0	54	0	22	0	77	0.76
52620181--52620214	17	2.0	17	94	0	59	55	8	0	35	1.31
52629562--52629647	27	3.3	27	78	18	108	36	13	25	24	1.93
52629557--52629718	52	3.1	52	84	5	211	37	18	24	20	1.94
52629557--52629718	26	6.2	26	72	10	116	37	18	24	20	1.94
52631815--52631840	12	2.2	12	100	0	52	42	7	0	50	1.31
52632296--52632342	24	2.0	23	84	12	60	29	14	4	51	1.62
52632993--52633049	29	2.0	29	86	10	82	0	17	10	71	1.12
52636032--52636116	26	3.1	27	88	6	127	54	0	10	35	1.35
52638498--52638557	30	2.0	29	84	9	77	48	10	8	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52638942--52639020	3	25.3	3	73	19	56	32	1	3	62	1.21
52638981--52639017	17	2.1	17	90	10	56	29	0	0	70	0.88
52638981--52639047	20	3.0	22	69	30	54	26	2	2	67	1.20
52643541--52643602	30	2.1	29	82	5	72	41	0	4	53	1.22
52644677--52644778	52	2.0	52	98	0	195	30	22	10	36	1.88
52645148--52645181	17	1.9	17	88	5	50	79	5	2	11	1.02
52645538--52645667	39	3.2	39	77	19	117	34	4	10	50	1.58
52645551--52645652	38	2.6	40	81	10	113	38	5	8	47	1.59
52647469--52647622	48	3.2	48	93	0	245	33	26	29	9	1.89
52647612--52647715	51	2.0	51	100	0	208	31	19	33	15	1.93
52650245--52650270	10	2.6	10	100	0	52	53	7	0	38	1.30
52654439--52654479	21	2.0	21	90	9	66	63	14	9	12	1.52
52659309--52659390	42	2.0	42	100	0	164	20	21	18	39	1.93
52660873--52660916	10	4.3	10	82	5	52	75	2	0	22	0.92
52660988--52661059	27	2.7	27	80	0	90	26	33	30	9	1.89
52661093--52661122	9	3.3	9	95	0	51	60	0	40	0	0.97
52661139--52661191	15	3.5	15	74	5	54	73	0	24	1	0.93
52661409--52661587	76	2.3	77	78	8	195	32	4	13	49	1.62
52664756--52665261	153	3.3	154	90	1	766	30	10	8	50	1.68
52665514--52665608	10	9.0	11	72	18	53	2	30	0	67	1.02
52665528--52665623	20	4.6	20	74	16	72	1	34	0	64	1.01
52665572--52665628	13	4.1	13	78	13	60	0	35	0	64	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52665658--52665723	27	2.4	27	82	0	78	7	34	31	25	1.84
52670813--52670861	18	2.7	20	81	15	61	26	6	0	67	1.14
52671737--52671777	17	2.3	18	91	4	66	39	0	0	60	0.96
52672562--52672636	19	4.0	19	72	10	64	30	1	2	65	1.15
52672574--52672633	9	6.6	9	74	11	59	28	1	1	68	1.09
52672574--52672645	37	1.9	37	86	5	101	27	2	1	68	1.12
52672567--52672644	19	4.2	19	70	15	63	26	2	2	67	1.16
52672567--52672636	10	7.4	10	77	9	58	28	1	2	67	1.14
52672579--52672674	37	2.5	38	78	13	99	33	4	2	60	1.27
52672703--52672751	17	2.7	19	82	17	61	26	0	4	69	1.06
52672763--52672798	16	2.2	16	90	0	54	27	0	0	72	0.85
52684030--52684157	43	3.0	43	89	1	168	21	19	21	36	1.95
52689445--52689693	50	4.8	50	85	4	284	20	29	24	26	1.99
52689444--52689693	100	2.4	104	88	6	357	20	29	24	26	1.99
52689788--52689819	13	2.5	13	94	0	55	56	12	0	31	1.37
52690031--52690088	30	1.9	30	85	0	80	31	24	1	43	1.64
52693782--52693841	27	2.2	27	80	11	68	31	10	0	58	1.31
52743841--52743881	18	2.4	18	80	11	52	31	0	4	63	1.15
52752063--52752198	67	2.0	67	98	0	263	28	19	16	36	1.93
52760974--52761004	7	4.4	7	100	0	62	12	54	16	16	1.71
52768898--52768958	27	2.3	27	94	2	106	34	32	13	19	1.90
52772615--52772660	21	2.1	21	84	8	56	39	10	4	45	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52772648--52772846	46	4.3	44	73	16	179	37	7	0	54	1.33
52772597--52772806	93	2.2	95	80	9	218	37	7	1	53	1.38
52772651--52772721	35	2.0	36	83	2	90	36	5	0	57	1.22
52772692--52772823	42	3.1	43	76	10	119	39	8	0	51	1.37
52777773--52778111	33	9.7	33	67	24	146	21	19	27	31	1.97
52777847--52777896	26	1.9	26	95	0	91	18	22	32	28	1.97
52777769--52778075	102	3.0	102	91	1	490	21	18	27	31	1.97
52777769--52778075	103	3.0	103	93	0	499	21	18	27	31	1.97
52782055--52782157	44	2.3	45	84	3	127	30	23	13	33	1.93
52782075--52782162	46	2.0	44	90	4	140	28	27	13	30	1.94
52789218--52789320	44	2.3	45	84	3	127	30	23	13	33	1.93
52789238--52789325	46	2.0	44	90	4	140	28	27	13	30	1.94
52795106--52795364	33	7.6	33	69	24	164	20	20	27	32	1.97
52795102--52795409	103	3.0	103	95	0	526	21	19	27	31	1.97
52799486--52799550	31	2.1	30	86	11	87	35	4	6	53	1.46
52808648--52808690	18	2.3	19	88	4	70	27	6	0	65	1.18
52808761--52808838	21	3.5	21	72	13	59	25	7	2	64	1.33
52815176--52815234	30	2.0	30	86	0	82	22	35	15	27	1.94
52815187--52815260	15	4.9	15	89	0	94	21	35	16	27	1.94
52828480--52828506	12	2.2	12	100	0	54	29	14	48	7	1.71
52829242--52829343	46	2.2	46	92	1	170	19	21	33	25	1.97
52831123--52831157	13	2.7	13	90	0	52	22	31	8	37	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52831457--52831692	77	3.0	77	95	1	409	30	5	25	38	1.80
52836969--52837009	21	2.0	21	85	0	55	14	9	39	36	1.79
52836982--52837026	21	2.1	21	84	8	56	17	8	37	35	1.81
52838588--52838612	4	6.2	4	100	0	50	24	0	0	76	0.80
52841551--52841588	15	2.5	15	87	8	51	31	0	2	65	1.06
52841839--52841902	13	4.9	13	82	0	83	29	6	28	35	1.82
52841840--52841902	26	2.4	26	86	0	99	30	4	28	36	1.78
52842656--52842694	21	2.0	20	85	14	55	48	0	5	46	1.24
52844721--52844767	22	2.2	22	85	7	62	55	0	4	40	1.19
52845062--52845086	10	2.5	10	100	0	50	60	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185