genome.fa.s17.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  138  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42735007--42735077	19	3.8	19	76	10	74	67	4	1	26	1.17
42735939--42736168	88	2.6	91	83	4	258	39	18	10	31	1.85
42736268--42736344	28	2.8	28	74	5	77	67	1	1	29	1.07
42736320--42736431	8	13.2	8	69	19	52	68	2	3	25	1.18
42736321--42736432	9	11.9	9	69	17	59	68	2	3	25	1.18
42736293--42736374	36	2.2	38	82	10	107	64	0	1	34	1.01
42736348--42736393	20	2.3	20	84	0	56	69	4	4	21	1.24
42736359--42736421	10	6.4	10	74	17	60	69	4	3	22	1.21
42736359--42736421	30	2.1	29	91	2	99	69	4	3	22	1.21
42736360--42736432	19	3.8	19	80	5	76	68	4	4	23	1.24
42738365--42738436	19	3.7	19	73	12	65	27	2	4	65	1.25
42738306--42738406	29	3.5	28	75	10	96	31	6	2	58	1.40
42738482--42738520	9	4.2	9	83	6	51	30	2	0	66	1.05
42738467--42738520	18	2.8	19	80	8	56	33	1	0	64	1.04
42741318--42741392	39	1.9	39	81	10	91	40	21	20	18	1.92
42741265--42741683	114	3.7	113	91	2	651	37	18	20	23	1.94
42742432--42742484	7	7.4	7	77	12	54	18	0	28	52	1.46
42742398--42742484	21	4.1	20	76	16	86	17	0	29	52	1.44
42742574--42742613	21	1.9	21	89	0	62	22	0	30	47	1.52
42742555--42742606	14	3.7	14	73	0	59	17	0	34	48	1.48
42742983--42743020	20	1.9	20	94	0	67	34	0	7	57	1.28
42743643--42743671	15	1.9	15	100	0	58	37	0	13	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42743625--42743694	16	3.9	16	69	25	50	41	0	10	48	1.36
42743667--42743717	25	2.1	24	85	3	66	47	0	5	47	1.26
42745523--42746216	9	79.4	9	65	18	199	46	19	2	31	1.64
42745522--42745573	21	2.6	19	88	8	77	48	15	0	36	1.45
42745635--42745677	20	2.2	19	87	4	59	55	11	2	30	1.48
42745641--42745689	15	3.5	15	75	16	59	57	12	2	28	1.46
42745635--42745764	21	6.0	21	76	16	106	48	18	2	30	1.61
42745719--42746096	34	11.1	34	68	13	129	45	20	2	30	1.65
42745750--42745815	25	2.6	25	85	0	78	45	22	3	28	1.67
42745655--42746214	16	32.8	16	66	17	152	46	19	2	31	1.64
42745807--42745855	25	2.0	25	87	0	71	48	18	0	32	1.48
42745832--42746155	120	2.7	120	95	0	576	45	20	3	31	1.68
42746070--42746187	25	4.7	25	70	12	80	46	18	2	32	1.63
42752081--42752223	43	3.3	43	82	6	166	28	16	25	29	1.96
42752147--42752388	42	5.8	41	75	5	126	23	18	25	31	1.97
42752147--42752388	84	2.9	84	75	3	202	23	18	25	31	1.97
42752276--42752388	41	2.7	42	89	4	167	24	18	21	35	1.96
42754334--42754371	20	1.9	21	84	10	53	44	5	7	42	1.56
42754734--42754763	10	3.0	10	90	0	51	30	23	0	46	1.52
42756138--42756205	20	3.5	19	82	6	73	33	7	11	47	1.68
42761850--42761896	21	2.2	21	88	0	76	40	8	14	36	1.77
42763090--42763128	9	4.4	9	83	6	53	53	2	7	35	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42763084--42763119	17	2.1	17	94	0	63	52	5	8	33	1.55
42768711--42768871	46	3.5	46	85	0	189	18	21	14	45	1.85
42768848--42769010	45	3.6	45	86	3	238	25	21	17	36	1.94
42768848--42769047	90	2.2	90	82	1	240	24	20	18	38	1.93
42769681--42769720	21	2.0	20	85	5	53	47	2	22	27	1.64
42775274--42775315	21	2.0	21	85	4	57	21	14	26	38	1.91
42775650--42775808	25	6.3	26	80	11	136	38	22	12	25	1.90
42775572--42775788	50	4.3	50	81	2	222	39	22	12	25	1.90
42775650--42775808	75	2.1	75	83	2	194	38	22	12	25	1.90
42789414--42789659	122	2.0	122	100	0	492	38	30	13	17	1.89
42793456--42793503	25	1.9	25	82	0	60	14	0	10	75	1.06
42797682--42797712	16	1.9	16	100	0	62	32	25	9	32	1.88
42821506--42821695	50	3.8	50	84	2	229	22	29	21	27	1.99
42830506--42830564	24	2.4	25	80	2	66	28	22	23	25	1.99
42830545--42830629	25	3.4	25	90	0	125	30	18	23	27	1.98
42833258--42833369	56	2.0	55	94	1	197	43	3	3	49	1.37
42833683--42833933	43	5.9	43	90	0	335	24	27	20	27	1.99
42834366--42834452	45	1.9	46	90	2	140	33	2	21	42	1.66
42834397--42834428	16	2.0	16	100	0	64	31	0	25	43	1.55
42835496--42835540	17	2.6	17	89	6	65	35	0	6	57	1.25
42835872--42835920	11	4.4	11	77	12	55	34	2	0	63	1.06
42835872--42835920	22	2.2	23	88	3	73	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42837293--42837341	23	2.2	22	82	7	71	61	2	0	36	1.08
42837375--42837417	22	2.0	22	90	0	68	32	44	2	20	1.65
42837379--42837433	22	2.5	21	77	13	58	36	45	1	16	1.58
42837428--42837473	21	2.2	21	88	7	67	43	30	0	26	1.55
42837818--42837901	40	2.1	40	84	6	109	27	34	20	17	1.95
42837835--42838013	41	4.4	40	77	2	135	29	30	18	21	1.97
42852534--42853003	52	8.6	53	66	17	201	25	19	22	32	1.97
42852524--42852957	113	3.9	113	81	9	496	28	18	21	31	1.97
42853048--42853341	116	2.5	115	82	7	348	26	22	19	32	1.97
42853155--42853363	57	3.8	55	73	11	176	26	22	19	31	1.97
42853048--42853373	115	2.8	111	79	10	336	25	22	17	34	1.96
42858069--42858250	41	4.4	40	77	4	148	23	18	30	28	1.97
42858622--42858667	21	2.2	21	88	7	67	26	0	30	43	1.55
42858662--42858716	22	2.5	20	75	16	56	16	1	45	36	1.58
42858755--42858801	12	3.8	12	75	13	51	34	0	2	63	1.06
42858754--42858813	24	2.5	24	83	2	86	38	0	1	60	1.07
42859107--42859163	9	6.6	9	82	8	73	45	21	0	33	1.52
42859116--42859169	25	2.2	25	89	0	81	46	18	0	35	1.50
42860218--42860266	23	2.1	24	84	3	64	61	2	2	34	1.19
42860627--42860658	12	2.7	12	95	0	55	59	6	3	31	1.38
42860606--42860642	18	2.1	18	90	10	58	62	5	0	32	1.18
42861588--42861624	15	2.3	16	90	9	58	10	5	45	37	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42861725--42861756	16	2.0	16	100	0	64	43	25	0	31	1.55
42861701--42861787	45	1.9	46	90	2	140	42	21	2	33	1.66
42862222--42862473	43	5.9	43	89	0	335	27	20	27	24	1.99
42862788--42862899	56	2.0	55	94	1	197	49	3	3	43	1.37
42865530--42865614	25	3.4	25	90	0	125	27	23	18	30	1.98
42865595--42865652	24	2.4	25	82	2	64	25	24	22	27	2.00
42887963--42887996	17	2.0	17	100	0	68	35	5	5	52	1.50
42890785--42890889	17	5.8	18	71	12	81	32	2	15	49	1.59
42890780--42890891	37	3.0	36	89	5	170	34	3	15	46	1.63
42890889--42890980	9	9.6	9	82	13	112	22	8	28	40	1.84
42890889--42890982	20	4.8	20	92	2	156	22	8	27	41	1.83
42902923--42903092	40	4.3	40	85	1	207	23	21	30	24	1.99
42902945--42903127	79	2.3	80	80	1	208	25	21	29	24	1.99
42907132--42907159	3	9.3	3	100	0	56	32	32	0	35	1.58
42912229--42912260	16	2.0	16	93	0	55	25	15	0	59	1.36
42912486--42912676	51	3.8	51	79	8	237	29	28	17	24	1.98
42912484--42912668	101	1.8	102	91	3	311	29	27	18	24	1.98
42933259--42933290	4	8.0	4	100	0	64	75	0	0	25	0.81
42936933--42936992	31	2.0	31	93	6	106	31	10	16	41	1.81
42944019--42944174	75	2.1	75	85	4	217	43	6	10	39	1.64
42951436--42951626	50	3.7	50	82	4	211	23	28	21	26	1.99
42980012--42980075	24	2.7	24	87	0	83	40	4	7	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42982007--42982049	3	14.7	3	95	4	79	65	0	0	34	0.93
42982077--42982115	20	2.0	20	89	0	60	66	0	2	30	1.05
42991996--42992084	25	3.6	25	74	6	90	39	25	12	22	1.89
42991977--42992100	50	2.5	50	89	0	185	37	24	12	25	1.91
42992069--42992116	25	1.9	25	82	0	60	37	20	14	27	1.92
42997776--42998016	131	1.8	131	84	3	333	26	30	18	24	1.98
43000585--43000719	67	2.0	67	95	2	245	28	32	18	20	1.96
43000789--43000931	57	2.4	60	83	9	177	23	25	20	30	1.98
43003893--43003922	12	2.4	13	94	5	53	10	20	36	33	1.86
43013757--43013790	14	2.4	14	100	0	68	29	20	11	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185