genome.fa.s17.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  115  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36056397--36056466	29	2.4	29	80	4	79	28	27	8	35	1.86
36056239--36056481	116	2.1	117	86	2	337	23	25	13	36	1.93
36056310--36056475	87	1.9	88	82	6	212	24	25	12	37	1.91
36058206--36058302	51	1.9	51	97	0	185	31	2	34	31	1.70
36075529--36075557	12	2.4	12	100	0	58	13	10	24	51	1.72
36084964--36085098	62	2.2	62	86	0	198	37	13	9	39	1.77
36085288--36085441	55	2.8	54	81	7	175	42	2	2	52	1.29
36085615--36085648	16	2.1	16	100	0	68	23	23	8	44	1.81
36086226--36086255	4	7.5	4	100	0	60	23	0	50	26	1.50
36087182--36087233	21	2.6	20	80	17	63	59	3	0	36	1.16
36087853--36087927	37	2.0	37	100	0	150	37	21	17	24	1.94
36090364--36090397	17	2.0	17	94	0	59	32	5	44	17	1.73
36091001--36091078	10	8.4	9	70	19	54	64	3	1	30	1.20
36091814--36091887	31	2.4	31	86	0	103	43	8	14	33	1.75
36099586--36099696	54	2.0	55	84	5	145	48	6	18	26	1.72
36107829--36107886	23	2.5	23	91	0	89	37	13	20	27	1.91
36113010--36113206	98	2.0	98	93	0	340	36	24	10	28	1.88
36114887--36114924	14	2.7	15	88	12	62	13	15	28	42	1.85
36115248--36115533	44	6.7	43	73	7	190	28	22	20	27	1.99
36115248--36115532	128	2.2	129	87	1	410	28	22	21	27	1.99
36115462--36115620	45	3.6	45	72	12	112	27	23	19	28	1.98
36127187--36127383	98	2.0	98	93	0	340	37	23	9	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36128369--36128415	18	2.5	19	75	6	51	48	17	0	34	1.47
36131454--36131497	23	1.9	23	86	9	63	45	0	0	54	0.99
36132338--36132390	23	2.4	22	87	3	70	45	0	1	52	1.11
36132330--36132390	23	2.7	23	78	14	65	45	0	1	52	1.10
36144772--36144815	23	1.9	23	86	9	63	45	0	0	54	0.99
36145659--36145709	23	2.3	21	90	6	75	45	0	1	52	1.12
36149170--36149225	22	2.5	23	82	2	69	51	1	1	44	1.22
36149201--36149240	16	2.5	16	91	0	62	47	2	7	42	1.45
36149229--36149427	66	3.1	66	93	5	331	40	5	9	45	1.58
36149491--36149534	24	1.9	24	90	9	74	61	2	0	36	1.09
36150364--36150413	20	2.5	20	90	0	73	56	6	4	34	1.43
36153741--36153852	59	1.9	59	83	3	145	50	13	9	26	1.73
36153800--36154016	83	2.6	83	79	7	237	47	11	11	29	1.75
36155014--36155061	10	4.7	10	89	2	60	8	8	0	83	0.82
36161693--36161838	43	3.4	43	83	1	184	34	28	13	24	1.92
36161693--36161861	43	3.9	43	82	3	169	32	27	13	26	1.94
36164431--36164596	9	18.6	9	73	13	103	35	0	18	45	1.54
36164624--36164658	18	1.9	18	94	0	61	37	0	20	42	1.52
36166869--36166915	23	2.0	23	91	0	76	40	40	6	12	1.69
36166868--36166931	30	2.2	29	86	8	85	39	40	4	15	1.68
36166868--36167061	7	27.6	7	72	9	108	42	35	2	19	1.65
36166921--36166966	22	2.1	22	83	0	56	47	28	2	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36167017--36167055	20	1.9	21	89	5	62	46	33	0	20	1.51
36167232--36167275	14	3.1	15	81	12	58	54	29	0	15	1.42
36167239--36167283	14	3.2	14	81	9	56	53	31	0	15	1.43
36167450--36167527	40	2.0	40	82	5	95	21	25	23	29	1.99
36167395--36168023	154	4.1	155	78	5	619	27	22	18	31	1.97
36167764--36167869	40	2.7	38	75	8	97	25	24	18	31	1.98
36167918--36168063	40	3.7	40	89	0	204	24	21	21	32	1.98
36167414--36168021	308	2.0	309	81	3	715	27	21	18	32	1.97
36167934--36168083	40	3.8	39	85	4	158	22	22	20	34	1.97
36168486--36168510	11	2.3	11	100	0	50	28	0	8	64	1.22
36169088--36169127	21	1.9	21	84	0	53	57	2	10	30	1.45
36169135--36169175	21	2.0	21	85	0	55	41	9	12	36	1.76
36169228--36169286	19	3.1	19	87	4	91	52	6	1	38	1.38
36169233--36169300	14	3.9	16	72	26	50	51	8	1	38	1.42
36169231--36169286	20	2.9	19	86	5	85	53	7	1	37	1.39
36169274--36169302	14	2.1	14	100	0	58	51	13	0	34	1.42
36170357--36170395	7	5.6	7	100	0	78	56	0	0	43	0.99
36170418--36170542	56	2.2	56	80	13	148	37	2	2	57	1.25
36170473--36170516	13	3.8	13	72	27	53	31	0	0	68	0.90
36170471--36170512	21	2.0	21	100	0	84	33	0	0	66	0.92
36170422--36170552	24	5.5	24	72	18	87	38	2	2	57	1.24
36170472--36170554	11	7.9	11	71	20	63	37	0	1	61	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36175661--36175713	23	2.3	23	93	0	88	30	9	18	41	1.82
36190798--36190863	31	2.2	29	86	5	96	53	3	9	34	1.48
36190801--36190863	29	2.2	28	83	11	74	53	3	7	34	1.46
36191241--36191273	16	2.1	16	94	0	57	57	3	0	39	1.14
36192755--36192867	44	2.6	44	81	4	138	27	28	14	30	1.95
36193039--36193365	44	7.3	43	72	7	231	28	24	17	29	1.98
36193056--36193431	91	4.2	90	89	3	469	26	24	17	31	1.97
36193087--36193454	44	8.2	44	71	10	215	27	24	18	29	1.98
36193267--36193415	48	3.2	47	71	10	162	22	24	21	30	1.99
36193059--36193431	180	2.1	179	84	6	479	26	24	17	31	1.97
36194702--36194740	17	2.3	17	100	0	78	15	33	20	30	1.94
36194754--36194853	47	2.1	47	81	0	110	13	27	15	45	1.82
36197549--36197588	19	2.0	20	85	4	55	47	10	20	22	1.79
36199954--36199986	16	2.1	16	94	0	57	57	3	0	39	1.14
36200713--36200742	7	4.4	7	95	4	53	73	0	10	16	1.09
36208931--36208963	15	2.3	15	89	5	50	27	21	27	24	1.99
36211455--36211510	19	2.9	20	81	5	71	28	26	28	16	1.97
36214785--36214879	28	3.5	26	88	4	102	32	17	22	27	1.96
36214804--36214885	28	2.9	28	92	0	137	37	14	18	29	1.90
36216646--36217064	40	10.5	40	85	1	408	18	27	18	36	1.94
36216742--36216804	20	3.2	19	68	8	54	15	34	15	33	1.90
36216646--36217042	120	3.3	119	80	1	452	18	26	18	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36221848--36221873	6	4.3	6	100	0	52	30	15	34	19	1.93
36228229--36228276	24	1.9	26	87	8	73	41	2	10	45	1.50
36229191--36229229	10	3.9	10	83	12	53	84	0	15	0	0.62
36234683--36234765	31	2.7	31	86	0	112	27	18	19	34	1.95
36234735--36234771	13	2.8	14	80	12	51	24	21	16	37	1.93
36235048--36235181	49	2.7	49	84	0	160	25	14	18	41	1.89
36250838--36250884	23	2.0	22	84	15	60	36	23	0	40	1.55
36250980--36251100	23	5.3	23	82	5	165	30	26	20	22	1.98
36250980--36251100	46	2.7	46	92	1	190	30	26	20	22	1.98
36256037--36256080	21	2.1	21	100	0	88	15	13	34	36	1.87
36258393--36258429	18	2.1	18	89	0	56	43	5	27	24	1.76
36258900--36258933	17	2.0	17	94	0	59	20	11	8	58	1.59
36262078--36262135	24	2.4	25	82	11	75	53	0	1	44	1.10
36262882--36262959	13	6.5	13	77	16	78	41	0	10	48	1.37
36262875--36262924	23	2.2	23	92	3	84	40	0	10	50	1.36
36262882--36262959	36	2.2	36	95	0	138	41	0	10	48	1.37
36266458--36266497	20	2.0	20	90	9	64	37	10	17	35	1.83
36270903--36271189	147	2.0	142	86	6	400	45	9	4	40	1.57
36271952--36272294	42	8.2	42	88	1	454	37	23	18	20	1.94
36277701--36277753	4	13.2	4	75	0	52	41	1	33	22	1.65
36281005--36281065	20	3.4	19	72	27	69	65	0	4	29	1.13
36281005--36281072	34	2.0	34	97	0	127	67	0	4	27	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36281010--36281068	12	5.3	11	76	15	50	66	0	5	28	1.13
36282005--36282098	25	3.8	25	75	13	79	30	24	19	25	1.98
36285236--36285545	153	2.1	150	85	7	414	43	11	2	41	1.55
36291191--36291246	27	2.1	27	100	0	112	7	35	14	42	1.73
36291988--36292133	4	36.0	4	72	20	60	1	27	1	69	1.04
36291959--36292044	31	2.5	35	83	10	108	0	29	0	70	0.87
36291960--36292066	14	7.5	13	71	19	72	0	26	0	73	0.83
36291990--36292134	19	7.5	19	69	20	79	1	28	1	68	1.06
36292026--36292098	25	3.2	22	76	18	62	1	26	1	71	1.02
36292064--36292136	36	2.0	36	100	0	146	2	30	2	64	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185