genome.fa.s17.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  167  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51030192--51030235	14	3.1	14	86	3	61	40	0	4	54	1.21
51031922--51032096	41	4.3	42	86	5	121	22	26	19	30	1.98
51031949--51032110	41	4.0	41	91	1	236	22	27	20	29	1.99
51054041--51054080	13	3.1	13	82	10	55	65	0	5	30	1.14
51065576--51065625	14	3.8	13	84	12	66	18	16	6	60	1.55
51065575--51065638	26	2.4	26	81	5	74	21	15	4	57	1.56
51066458--51066579	29	4.0	29	79	17	147	28	50	3	18	1.62
51067128--51067250	22	5.7	21	70	16	54	30	4	4	60	1.33
51067163--51067256	10	10.2	9	69	22	54	29	3	2	64	1.20
51067179--51067216	12	3.2	12	81	11	51	26	0	0	73	0.83
51067165--51067256	20	4.4	20	73	15	71	29	3	2	65	1.20
51067180--51067239	24	2.4	24	81	13	68	26	3	1	68	1.15
51067238--51067278	21	2.0	21	95	0	73	39	4	4	51	1.45
51067271--51067313	21	2.0	21	81	4	50	32	4	4	58	1.39
51067395--51067454	16	3.7	16	74	10	59	30	3	1	65	1.19
51069745--51069787	22	2.0	22	86	8	63	25	16	18	39	1.91
51070698--51070744	23	2.0	23	95	0	85	53	10	4	31	1.55
51078340--51078377	19	2.0	19	100	0	76	42	21	0	36	1.53
51079461--51079504	19	2.4	19	88	3	72	54	4	4	36	1.41
51081819--51081991	90	1.9	91	83	5	226	33	13	18	34	1.90
51083763--51083819	26	2.2	26	81	9	64	56	5	0	38	1.22
51084586--51084615	4	7.5	4	100	0	60	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51095352--51095410	26	2.3	25	82	5	64	38	1	8	50	1.43
51095667--51095737	21	3.4	21	75	9	65	60	1	0	38	1.06
51099325--51099756	215	2.0	215	94	0	756	33	14	25	26	1.94
51101723--51101881	43	3.7	42	81	4	158	24	16	27	31	1.97
51101764--51101873	42	2.6	42	85	1	130	26	16	24	32	1.96
51104821--51104878	22	2.6	22	81	7	64	41	17	5	36	1.72
51106343--51106508	73	2.3	73	75	7	167	35	22	24	18	1.95
51113097--51113139	21	2.0	21	86	8	61	69	6	2	20	1.23
51113533--51113571	17	2.4	17	82	4	53	30	0	0	69	0.89
51117655--51117691	18	2.0	19	85	15	51	40	0	8	51	1.32
51118358--51118395	16	2.4	16	90	0	58	31	0	34	34	1.58
51118374--51118468	45	2.1	43	86	9	129	33	6	26	33	1.82
51118630--51118664	18	2.0	17	88	5	52	54	0	0	45	0.99
51118517--51118831	155	2.0	157	95	1	562	44	2	5	47	1.39
51118774--51118815	15	2.9	15	82	10	52	50	0	0	50	1.00
51118763--51119060	120	2.5	121	91	4	469	49	4	2	42	1.37
51118884--51118935	15	3.6	15	80	12	56	53	1	0	44	1.11
51118753--51119072	59	5.5	54	66	22	164	49	4	2	43	1.36
51119108--51119251	47	3.1	46	66	20	120	51	4	1	42	1.32
51119076--51119283	91	2.3	91	89	2	301	48	4	2	44	1.37
51119057--51119243	44	4.1	43	69	18	121	49	3	2	44	1.32
51119126--51119264	47	3.0	47	68	17	137	50	5	1	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51128261--51128459	100	2.0	98	93	3	337	65	6	6	22	1.38
51129157--51129202	18	2.5	19	89	6	69	15	6	23	54	1.64
51145262--51145328	29	2.3	29	81	0	80	22	16	19	41	1.90
51146233--51146297	28	2.3	29	84	5	80	43	20	15	21	1.88
51148453--51148496	21	2.0	22	83	12	56	50	4	0	45	1.22
51152739--51152770	16	2.0	16	93	0	55	59	0	0	40	0.97
51157081--51157107	5	5.4	5	100	0	54	44	55	0	0	0.99
51161208--51161258	27	1.9	26	88	11	77	58	0	31	9	1.30
51163594--51163672	35	2.2	36	82	8	99	58	2	5	34	1.34
51163741--51163765	3	8.3	3	100	0	50	68	0	0	32	0.90
51164381--51164416	14	2.6	14	90	0	54	44	0	2	52	1.15
51166055--51166229	41	4.3	42	86	5	121	22	26	19	30	1.98
51166082--51166243	41	4.0	41	91	1	236	22	27	20	29	1.99
51178921--51178983	29	2.2	29	82	5	74	61	4	1	31	1.26
51183315--51183739	81	5.2	81	85	4	554	36	16	15	32	1.90
51183314--51183739	163	2.6	162	84	5	572	36	16	15	31	1.90
51192276--51192304	4	7.2	4	100	0	58	75	0	0	24	0.80
51193441--51193465	6	4.2	6	100	0	50	16	36	16	32	1.90
51197864--51197896	4	8.2	4	100	0	66	48	24	0	27	1.51
51198485--51198585	47	2.2	46	85	8	134	53	6	1	37	1.39
51203695--51203745	12	4.2	12	73	9	50	29	7	1	60	1.36
51203704--51203775	33	2.2	32	80	4	81	30	9	1	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51212521--51212634	56	2.0	56	100	0	228	50	15	1	31	1.54
51214998--51215083	45	1.9	45	87	0	127	32	22	16	29	1.95
51215080--51215275	51	3.9	50	73	4	187	31	28	16	23	1.96
51218026--51218063	15	2.6	15	83	4	51	44	15	7	31	1.75
51220800--51220872	36	2.1	36	84	5	96	26	5	2	65	1.27
51220833--51220881	12	4.4	11	77	12	55	26	2	2	69	1.10
51220917--51220975	9	6.4	9	74	16	50	30	3	1	64	1.20
51220929--51220990	24	2.5	26	81	7	83	33	1	1	62	1.14
51220957--51220997	14	2.8	16	82	14	52	31	0	4	63	1.15
51222707--51222898	21	9.1	21	68	7	102	43	16	21	17	1.87
51222705--51222898	42	4.6	42	78	6	185	43	16	22	18	1.88
51222707--51222904	85	2.3	84	83	2	245	43	16	22	17	1.87
51226805--51226856	17	3.2	16	76	13	52	51	7	7	32	1.59
51226862--51226914	19	3.1	16	72	17	52	43	11	15	30	1.81
51227382--51227456	14	5.6	14	73	19	61	0	22	0	77	0.77
51227577--51227635	11	5.6	10	84	9	73	0	1	15	83	0.74
51227584--51227636	5	9.7	6	93	6	71	0	0	15	84	0.61
51227700--51227743	22	2.0	22	86	0	61	4	13	0	81	0.83
51227711--51227762	3	18.0	3	88	4	63	0	25	0	75	0.81
51228126--51228229	29	3.6	29	80	5	113	38	6	21	33	1.80
51228408--51229406	81	12.3	81	90	5	1556	34	19	17	28	1.94
51228408--51229406	245	4.1	242	91	4	1536	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51236416--51236467	17	3.2	16	76	13	52	51	7	7	32	1.59
51236472--51236524	19	3.1	16	72	17	52	43	11	15	30	1.81
51236990--51237056	14	5.1	14	75	20	56	0	23	0	76	0.79
51236989--51237060	15	4.8	16	72	16	57	0	25	0	75	0.81
51237182--51237224	17	2.5	17	88	7	52	0	2	13	83	0.74
51237192--51237225	6	5.8	6	93	6	61	0	0	14	85	0.60
51237189--51237225	11	3.4	11	92	7	58	0	0	13	86	0.57
51237297--51237351	6	9.3	6	86	11	51	0	21	0	78	0.76
51237289--51237333	23	2.0	23	90	0	72	2	13	0	84	0.72
51237289--51237330	10	4.2	10	84	6	50	2	11	0	85	0.68
51237323--51237355	3	11.0	3	100	0	66	0	33	0	66	0.92
51237729--51237823	29	3.3	28	80	14	113	45	6	17	30	1.74
51237700--51237828	58	2.2	57	81	14	149	43	4	17	34	1.70
51238289--51238314	6	4.3	6	100	0	52	15	0	0	84	0.62
51238319--51238395	18	4.2	18	71	15	52	36	1	2	59	1.19
51242616--51242655	20	2.1	19	86	13	55	52	2	0	45	1.14
51242606--51242671	22	3.0	22	74	17	66	53	1	0	45	1.09
51253735--51253794	22	2.8	20	76	16	59	55	3	3	38	1.33
51253732--51253803	12	6.4	12	72	13	55	55	2	2	38	1.29
51253751--51253803	11	4.7	11	74	4	52	52	3	1	41	1.30
51254243--51254313	20	3.8	19	73	15	60	32	1	1	64	1.11
51260514--51260570	29	2.0	29	86	6	80	73	1	17	7	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51261026--51261059	5	6.8	5	93	0	59	20	0	17	61	1.34
51261265--51261311	24	2.0	24	84	16	62	34	0	14	51	1.43
51263946--51263998	27	2.0	27	81	7	63	47	0	3	49	1.19
51267896--51267943	22	2.1	23	81	11	55	66	6	6	20	1.36
51269530--51269663	72	1.9	72	88	0	205	30	17	22	29	1.96
51288877--51288927	23	2.2	24	82	10	70	37	0	9	52	1.34
51288886--51288926	13	3.4	13	77	19	52	36	0	12	51	1.40
51298315--51298371	21	2.7	21	81	10	62	63	3	0	33	1.12
51298315--51298371	22	2.7	21	81	5	60	63	3	0	33	1.12
51298305--51298378	30	2.5	29	77	12	80	59	2	0	37	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185