genome.fa.s17.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  146  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45080062--45080127	31	2.2	30	86	13	91	53	0	0	46	1.00
45093530--45093913	189	2.0	189	87	2	556	34	13	20	30	1.92
45097851--45097876	7	3.7	7	100	0	52	53	0	0	46	1.00
45100020--45100129	11	10.4	11	69	17	81	39	0	0	60	1.03
45100003--45100129	62	2.0	65	92	6	215	39	0	0	59	1.03
45100003--45100129	32	4.0	31	90	8	193	39	0	0	59	1.03
45100090--45100143	21	2.5	20	85	11	72	38	0	3	57	1.17
45103084--45103108	3	8.3	3	100	0	50	64	0	0	36	0.94
45105881--45105953	36	2.0	36	100	0	146	38	8	8	45	1.64
45106970--45107008	19	2.1	18	85	4	51	71	5	7	15	1.26
45125353--45125387	15	2.4	15	90	4	54	48	0	8	42	1.33
45131848--45131917	4	17.5	4	76	16	56	21	2	0	75	0.93
45131844--45131918	24	3.0	25	81	11	84	24	2	0	73	0.96
45131847--45131917	17	4.1	17	73	20	58	21	2	0	76	0.92
45131845--45131924	32	2.5	32	78	11	92	22	3	0	73	0.99
45132745--45132935	101	1.9	100	81	8	235	27	16	25	30	1.97
45132923--45132972	24	2.2	21	78	21	57	76	2	0	22	0.89
45132930--45132967	10	3.7	10	83	16	51	71	2	0	26	1.00
45132936--45132983	20	2.4	20	85	0	60	77	2	2	18	0.97
45132923--45132983	27	2.4	24	75	19	61	77	1	1	19	0.95
45133476--45133510	15	2.4	15	90	4	54	48	0	8	42	1.33
45138791--45138829	5	7.8	5	100	0	78	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45142239--45142302	13	4.9	13	74	12	60	29	6	25	39	1.80
45142532--45142579	19	2.6	18	77	9	51	52	0	2	45	1.12
45144357--45144530	71	2.4	73	78	9	187	54	12	8	25	1.64
45145996--45146029	15	2.3	15	94	0	59	44	0	5	50	1.26
45145876--45146305	132	3.3	132	95	1	765	36	8	6	48	1.60
45146125--45146161	15	2.5	15	100	0	74	43	0	5	51	1.24
45146260--45146292	15	2.2	15	100	0	66	42	0	6	51	1.26
45148250--45148353	25	4.2	25	92	0	172	47	26	23	2	1.66
45148240--45148278	19	2.1	19	95	0	69	51	23	25	0	1.49
45150928--45151220	90	3.3	90	78	2	295	35	13	23	27	1.93
45154965--45155060	34	2.8	34	90	0	147	46	14	5	33	1.67
45161245--45161297	18	3.0	17	91	5	79	39	1	1	56	1.21
45161445--45161550	44	2.5	41	79	16	126	35	30	3	30	1.75
45161458--45161550	44	2.1	46	91	4	154	37	29	4	29	1.76
45161532--45161584	16	3.3	16	87	10	81	24	35	3	35	1.74
45163018--45163057	4	10.0	4	100	0	80	50	25	0	25	1.50
45165105--45165162	22	2.7	21	76	10	53	41	17	5	36	1.72
45165595--45166008	131	3.1	131	83	3	528	25	25	19	28	1.99
45166005--45166381	89	4.2	89	84	4	447	23	21	25	28	1.99
45166040--45166275	45	5.3	45	67	15	139	22	23	24	29	1.99
45166394--45166920	44	11.8	44	72	9	334	29	21	18	31	1.97
45166326--45166926	225	2.7	224	88	1	891	28	21	18	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45172269--45172318	24	2.2	23	89	7	75	34	2	6	58	1.34
45176975--45177032	22	2.6	22	81	7	64	41	17	5	36	1.72
45177004--45177047	19	2.5	17	82	13	61	31	15	9	43	1.79
45179484--45179523	20	1.9	22	85	10	57	32	0	5	62	1.17
45179634--45179683	16	3.2	16	78	16	68	66	0	0	34	0.92
45179619--45179683	31	2.3	25	87	12	67	63	0	0	36	0.95
45179632--45179682	15	3.3	15	79	15	68	64	0	0	35	0.94
45184216--45184254	17	2.4	16	84	16	53	33	12	0	53	1.39
45185162--45185203	18	2.2	20	87	8	61	33	21	9	35	1.86
45194494--45194523	12	2.4	13	94	5	53	16	6	0	76	0.99
45194491--45194548	28	2.1	28	81	9	66	13	12	1	72	1.20
45194754--45194778	5	5.0	5	100	0	50	80	0	0	20	0.72
45194808--45194871	24	2.6	24	80	5	65	31	3	20	45	1.67
45197203--45197236	14	2.5	14	90	4	52	52	32	0	14	1.42
45198092--45198137	24	1.9	24	86	8	67	34	15	10	39	1.82
45202476--45202544	11	6.5	11	77	17	67	37	2	0	59	1.12
45202485--45202584	29	3.4	30	77	14	93	37	3	0	60	1.12
45202503--45202584	20	4.1	20	69	20	64	37	2	0	59	1.11
45202468--45202569	40	2.6	39	92	6	170	35	2	0	61	1.11
45202546--45202591	20	2.2	20	88	3	65	36	2	0	60	1.09
45207976--45208036	21	2.8	21	92	5	95	42	1	29	26	1.65
45213900--45213924	13	1.9	13	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45216077--45216121	22	2.0	22	100	0	90	46	8	22	22	1.79
45225623--45225774	71	2.1	72	91	1	243	23	18	28	29	1.98
45227944--45228023	40	2.0	40	95	0	142	45	17	15	22	1.85
45230557--45230581	13	1.9	13	100	0	50	60	0	0	40	0.97
45232411--45232485	32	2.4	31	80	8	80	44	16	5	34	1.70
45232620--45232658	20	1.9	19	85	10	51	28	0	2	69	1.02
45233371--45233395	7	3.6	7	100	0	50	48	0	0	52	1.00
45241102--45241132	12	2.7	11	90	9	53	64	0	3	32	1.09
45246301--45246342	22	1.9	22	85	0	57	54	2	2	40	1.26
45260764--45260799	18	2.0	18	100	0	72	22	27	16	33	1.95
45261991--45262073	42	2.0	42	92	0	139	26	21	24	27	1.99
45266945--45267057	57	2.0	57	100	0	226	38	20	10	30	1.86
45281621--45281760	43	3.5	42	70	26	140	32	25	18	23	1.97
45281585--45281797	76	2.8	77	91	1	356	30	26	20	22	1.98
45281772--45281821	26	1.9	26	100	0	100	28	32	24	16	1.96
45283317--45283501	46	4.0	46	97	0	334	28	26	9	35	1.87
45287018--45287089	25	2.9	25	91	4	110	31	19	25	23	1.98
45287427--45287468	21	2.0	21	85	0	57	40	21	0	38	1.53
45287836--45287969	68	2.0	66	94	2	232	54	11	9	24	1.66
45297493--45297776	88	3.2	88	74	4	311	30	23	16	29	1.96
45297493--45297869	176	2.1	177	93	0	657	28	24	17	28	1.97
45297577--45297855	88	3.2	88	75	8	332	26	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45297577--45297882	44	7.0	43	70	6	175	26	24	18	29	1.98
45312080--45312224	75	1.9	74	88	1	218	35	15	20	28	1.93
45312500--45312536	13	2.8	13	100	0	74	70	0	13	16	1.17
45312548--45312580	14	2.4	14	94	0	57	42	0	12	45	1.41
45312968--45313056	3	29.3	3	82	8	101	65	2	4	28	1.24
45314395--45314431	19	1.9	19	100	0	74	29	5	37	27	1.79
45324324--45324457	60	2.2	60	100	0	268	23	27	14	34	1.94
45328060--45328117	30	1.9	30	85	0	80	31	22	6	39	1.80
45329364--45329436	32	2.5	27	74	19	83	26	2	17	53	1.57
45329377--45329437	32	1.9	32	93	0	104	27	3	16	52	1.59
45330614--45330658	20	2.4	18	79	13	54	51	0	4	44	1.21
45330738--45330779	19	2.2	20	91	4	68	50	11	9	28	1.70
45330763--45330800	14	2.7	14	95	0	67	39	18	5	36	1.73
45344103--45344138	17	2.1	17	100	0	72	11	11	11	66	1.45
45344879--45344974	23	4.2	23	89	5	142	19	8	23	47	1.76
45346170--45346372	25	8.3	25	76	14	199	49	5	7	36	1.55
45346163--45346345	48	3.8	48	97	0	339	49	6	7	36	1.58
45346328--45346386	27	2.2	27	84	6	75	54	1	1	42	1.20
45349952--45350160	92	2.3	91	86	5	278	45	3	3	46	1.39
45350088--45350135	26	1.9	25	84	16	64	45	0	2	52	1.12
45350214--45350544	66	5.4	63	67	22	247	41	3	6	48	1.43
45350176--45350588	120	3.4	120	96	2	742	42	2	5	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45350301--45350352	15	3.6	15	80	12	56	44	0	1	53	1.11
45350421--45350472	15	3.6	15	80	12	56	44	0	1	53	1.11
45350550--45350591	15	2.7	16	82	14	52	45	0	2	52	1.13
45350541--45350582	15	2.9	15	82	10	52	47	0	0	52	1.00
45350525--45350841	157	2.0	157	96	0	580	47	5	3	43	1.43
45350964--45351014	16	3.2	16	94	0	84	33	37	0	29	1.58
45353942--45354172	94	2.5	94	83	0	282	26	18	19	35	1.94
45354142--45354312	44	3.6	51	68	17	132	31	16	16	35	1.91
45354100--45354312	94	2.3	92	84	4	268	30	16	17	35	1.92
45354496--45354931	44	9.4	44	67	19	206	28	19	19	33	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185