genome.fa.s17.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  119  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37307404--37307457	13	4.2	13	76	9	65	31	7	27	33	1.84
37313606--37313651	23	2.0	23	83	8	58	45	15	23	15	1.84
37313905--37313963	28	2.1	28	81	12	68	50	6	5	37	1.51
37314007--37314048	21	2.0	21	95	0	75	21	11	14	52	1.73
37313962--37314155	67	2.9	67	92	2	307	32	12	11	42	1.80
37315790--37315839	14	3.6	14	76	17	52	52	0	0	48	1.00
37315790--37315839	15	3.6	14	75	22	52	52	0	0	48	1.00
37315791--37315853	26	2.4	26	82	12	83	53	0	1	44	1.10
37322260--37322308	18	2.7	18	87	0	71	10	8	46	34	1.67
37328218--37328504	49	5.6	51	82	6	232	28	20	27	23	1.99
37328220--37328406	100	1.8	103	83	6	254	26	20	29	22	1.99
37330670--37330715	24	1.9	24	91	8	76	28	8	8	54	1.61
37330475--37330899	214	2.0	213	86	5	601	36	9	11	43	1.73
37331366--37331408	16	2.6	16	85	3	50	4	23	0	72	1.04
37332275--37332402	38	3.4	38	87	0	184	35	19	14	31	1.91
37336197--37336223	13	2.1	13	100	0	54	29	0	22	48	1.51
37337303--37337427	42	2.9	42	70	18	105	22	17	28	32	1.96
37344130--37344156	13	2.1	13	100	0	54	29	0	22	48	1.51
37345237--37345392	84	1.8	85	84	10	212	25	17	25	30	1.97
37356917--37356946	13	2.2	14	94	5	53	46	0	6	46	1.29
37357975--37358022	19	2.5	19	89	0	78	12	25	33	29	1.92
37359237--37359270	12	2.8	12	90	0	50	52	2	0	44	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37360822--37360936	10	10.9	11	67	22	52	41	0	2	55	1.13
37360832--37360882	26	1.9	28	84	11	72	45	0	3	50	1.20
37360823--37360936	19	5.5	20	74	14	79	41	0	2	56	1.13
37360862--37360919	28	2.1	28	84	9	75	44	0	3	51	1.18
37362414--37362473	27	2.2	27	84	0	93	26	25	30	18	1.98
37365567--37365780	71	2.9	74	86	7	281	55	9	8	26	1.60
37368056--37368415	103	3.5	102	92	4	568	55	15	0	28	1.46
37368643--37368761	60	2.0	60	94	0	211	53	11	0	34	1.37
37368935--37368969	3	12.3	3	93	6	56	0	28	0	71	0.86
37368938--37368995	22	2.5	23	76	18	59	1	31	0	67	1.01
37369154--37369214	27	2.3	27	100	0	122	14	34	29	21	1.93
37369581--37369661	31	2.6	31	84	5	101	51	0	3	44	1.19
37369581--37369653	32	2.3	32	86	4	96	50	0	4	45	1.20
37378208--37378245	11	3.4	11	96	3	67	57	0	2	39	1.12
37378220--37378296	39	2.0	38	94	2	136	66	0	1	32	1.00
37381331--37381369	17	2.2	18	90	4	62	46	0	0	53	1.00
37381386--37381431	20	2.2	21	80	7	58	41	0	8	50	1.33
37385536--37385696	83	1.9	83	82	6	198	41	14	8	35	1.76
37387555--37387732	27	6.6	27	83	3	178	30	28	14	26	1.95
37387576--37387731	82	1.9	81	86	3	224	30	28	14	26	1.95
37403605--37403829	40	5.7	40	84	5	260	25	27	21	24	1.99
37411112--37411287	27	6.5	27	82	3	138	30	28	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37419122--37419299	27	6.6	27	84	3	205	29	28	15	26	1.96
37419143--37419298	82	1.9	81	88	3	233	29	28	15	26	1.96
37443795--37443859	22	3.0	22	78	8	55	50	3	7	38	1.47
37446003--37446658	89	7.5	89	87	3	859	27	23	19	30	1.98
37446005--37446578	45	12.9	45	73	4	313	27	22	18	31	1.97
37445986--37446666	44	15.5	44	71	6	468	27	22	19	30	1.98
37447916--37447964	13	3.6	14	81	13	57	14	20	2	63	1.40
37447926--37447968	7	6.1	7	84	10	52	13	18	2	65	1.38
37447926--37447967	15	2.9	15	82	13	52	14	19	2	64	1.39
37448894--37448934	20	2.0	20	90	0	64	68	7	12	12	1.39
37456579--37456615	15	2.6	15	87	8	51	51	0	0	48	1.00
37456694--37456728	18	2.0	17	88	5	52	54	0	0	45	0.99
37456577--37456766	104	1.8	104	94	0	335	48	5	2	43	1.38
37456581--37456805	104	2.2	104	84	5	287	49	5	2	42	1.39
37456809--37457055	89	2.7	91	91	2	417	47	3	3	45	1.36
37457020--37457058	17	2.5	15	84	12	51	58	0	0	41	0.98
37467728--37468017	120	2.4	120	91	3	476	42	3	4	50	1.37
37467858--37467913	15	4.1	14	78	14	55	41	0	0	58	0.98
37467801--37467988	61	3.1	61	66	17	174	42	2	5	48	1.41
37467969--37468003	18	2.0	17	88	5	52	45	0	0	54	0.99
37467956--37468005	16	3.1	16	76	21	50	46	0	2	52	1.12
37467957--37468231	147	1.9	149	95	1	500	47	2	3	46	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37468116--37468150	18	2.0	17	88	5	52	45	0	0	54	0.99
37468312--37468406	45	2.1	45	84	1	120	33	25	5	35	1.78
37468387--37468438	16	3.2	16	91	0	77	36	34	0	28	1.58
37474311--37474387	38	2.0	38	97	0	145	18	14	36	31	1.90
37476201--37476264	7	8.6	7	73	21	51	43	1	1	53	1.19
37476201--37476262	27	2.3	27	75	24	69	43	1	1	53	1.20
37476209--37476277	32	2.2	32	79	7	79	47	1	2	47	1.25
37476933--37476979	24	2.0	24	84	16	62	31	0	17	51	1.46
37477137--37477274	40	3.5	40	73	10	106	27	15	23	34	1.94
37479479--37479533	28	2.0	26	86	13	76	34	1	0	63	1.05
37483252--37483293	21	2.0	21	95	0	75	26	26	23	23	2.00
37486191--37486232	21	2.0	21	95	0	75	11	23	19	45	1.83
37488370--37488449	32	2.5	32	78	8	90	53	17	2	26	1.56
37488558--37488650	45	2.1	45	91	0	150	24	21	11	41	1.87
37489922--37489965	21	2.1	21	87	8	63	47	11	6	34	1.66
37491315--37491368	28	1.9	28	92	0	90	40	9	33	16	1.80
37517019--37517098	39	2.1	39	100	0	160	37	7	17	37	1.78
37517191--37517273	20	4.2	20	78	7	82	59	3	1	36	1.23
37517192--37517276	39	2.2	37	79	8	98	56	4	1	37	1.28
37518236--37518304	27	2.5	28	74	6	79	23	34	33	8	1.85
37518346--37518490	34	4.2	33	77	14	118	66	0	33	0	0.97
37518376--37518468	20	4.9	20	78	13	108	65	0	33	1	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37518361--37518490	15	9.3	14	68	20	58	67	0	31	0	0.96
37518398--37518460	25	2.5	24	78	17	65	68	0	30	1	0.99
37518366--37518490	34	3.6	34	80	8	146	68	0	31	0	0.96
37518368--37518481	55	2.1	54	82	9	144	66	0	32	0	0.98
37518375--37518492	10	11.0	10	68	17	60	68	0	30	0	0.95
37519298--37519354	26	2.2	25	84	12	71	63	8	0	28	1.24
37519460--37519511	26	2.0	25	85	3	68	63	1	1	32	1.16
37518826--37519897	153	7.0	154	81	7	1195	52	7	9	30	1.61
37524931--37525141	39	5.4	39	72	16	141	50	11	4	33	1.59
37525003--37525049	23	2.0	23	84	8	60	59	14	2	23	1.46
37525225--37525269	22	2.1	21	83	4	54	73	8	0	17	1.08
37525238--37525287	24	2.0	26	84	7	68	72	10	2	16	1.21
37525863--37525922	31	1.9	31	86	6	86	26	8	5	60	1.47
37526454--37526487	17	1.9	18	88	5	52	55	0	0	44	0.99
37526454--37526488	18	1.9	18	88	0	52	57	0	0	42	0.99
37526485--37526568	30	2.9	29	78	16	93	59	0	1	39	1.05
37527144--37527191	23	2.0	24	84	4	62	66	4	2	27	1.21
37530391--37530432	21	2.0	21	86	9	59	33	4	2	59	1.31
37531982--37532024	21	2.0	21	95	0	77	30	25	13	30	1.94
37532105--37532167	25	2.5	25	78	0	72	28	25	19	26	1.98
37534015--37534128	42	2.7	42	78	2	122	45	17	20	16	1.85
37534069--37534164	21	4.6	21	71	17	56	44	16	19	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37543117--37543146	16	1.9	16	93	6	53	50	20	0	30	1.49
37544273--37544342	27	2.6	27	76	0	77	27	22	25	24	2.00
37545314--37545352	20	1.9	21	89	5	62	25	10	0	64	1.25
37545321--37545361	15	2.6	16	82	14	50	31	4	0	63	1.15
37548667--37548850	101	1.8	102	88	5	284	24	18	26	30	1.98
37548659--37548849	51	3.8	51	75	8	187	24	17	27	30	1.97
37548855--37548953	46	2.2	43	81	12	110	23	18	25	33	1.97
37549054--37549126	37	1.9	38	86	2	103	42	2	23	31	1.68
37551841--37551872	16	2.0	16	93	0	55	25	15	0	59	1.36
37552100--37552240	50	2.8	50	87	5	203	29	28	17	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185