genome.fa.s17.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  147  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45354435--45355098	94	7.1	94	83	3	746	29	18	18	32	1.95
45354464--45354916	50	9.6	48	65	22	158	28	20	18	32	1.96
45354435--45355098	282	2.4	281	83	3	852	29	18	18	32	1.95
45363457--45363498	19	2.3	19	83	4	50	33	7	9	50	1.62
45366965--45366996	17	1.9	16	93	6	55	21	0	12	65	1.25
45372204--45372283	29	2.7	29	84	3	88	30	10	20	40	1.85
45378404--45378471	25	2.7	26	82	11	79	20	27	16	35	1.94
45379141--45379191	25	2.0	25	100	0	102	37	3	23	35	1.74
45381330--45381425	26	3.7	26	83	2	113	38	17	23	19	1.93
45384801--45385399	312	1.9	311	92	2	1006	27	11	21	38	1.88
45387858--45387884	13	2.1	13	100	0	54	22	7	0	70	1.12
45402436--45402537	28	3.7	28	86	2	134	31	10	25	32	1.90
45403285--45403909	23	26.8	24	69	12	243	27	14	18	39	1.90
45403303--45403485	93	2.0	92	89	3	278	28	15	18	37	1.91
45403404--45403918	93	5.5	93	92	0	787	28	14	17	39	1.89
45403285--45403915	140	4.5	140	83	2	802	28	14	18	39	1.90
45403738--45403953	23	9.0	24	68	23	93	29	12	16	41	1.85
45404990--45405040	20	2.6	19	84	9	66	45	15	13	25	1.83
45405260--45405302	22	1.9	23	85	4	61	39	13	2	44	1.57
45408088--45408129	5	8.4	5	89	0	57	16	28	19	35	1.93
45408512--45408553	17	2.4	18	80	11	52	61	2	2	33	1.21
45408543--45408585	22	2.0	22	85	0	59	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45411899--45412059	29	5.3	29	68	8	115	27	25	12	34	1.92
45411929--45412037	32	3.5	32	70	12	109	27	25	10	36	1.88
45411807--45412059	61	4.2	61	77	3	251	27	25	14	33	1.94
45415476--45415525	25	2.0	25	81	14	59	32	8	0	60	1.26
45419401--45419429	12	2.3	13	94	5	51	65	0	0	34	0.93
45421379--45421501	31	4.1	29	72	11	88	23	14	18	43	1.87
45421384--45421509	29	4.2	29	73	9	101	24	16	16	42	1.88
45434934--45434958	8	3.1	8	100	0	50	64	0	12	24	1.27
45440800--45440825	12	2.2	12	100	0	52	0	7	7	84	0.77
45445632--45445700	3	23.0	3	100	0	138	66	0	33	0	0.92
45452358--45452396	20	2.0	20	90	10	62	48	15	5	30	1.66
45457915--45458051	72	1.9	72	84	3	186	42	10	13	33	1.79
45458236--45458396	32	4.8	33	79	11	184	18	24	17	40	1.91
45458236--45458406	67	2.6	67	91	1	263	18	22	16	42	1.89
45459960--45460067	32	3.3	32	84	7	162	17	25	16	39	1.91
45461633--45461740	32	3.3	32	84	7	162	17	25	16	39	1.91
45463305--45463412	32	3.3	32	84	7	162	17	25	16	39	1.91
45464978--45465085	32	3.3	32	84	7	162	17	25	16	39	1.91
45466650--45466757	32	3.3	32	84	7	162	17	25	16	39	1.91
45469565--45469609	20	2.1	23	88	12	69	13	8	8	68	1.38
45470139--45470193	17	3.2	17	68	0	56	30	12	12	43	1.80
45474865--45474964	50	2.0	48	84	7	130	29	16	9	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45481413--45481661	50	4.8	50	84	3	291	20	28	23	26	1.99
45481412--45481661	100	2.4	104	87	5	346	20	28	23	26	1.99
45481756--45481787	13	2.5	13	94	0	55	56	12	0	31	1.37
45483816--45483865	25	2.0	25	96	0	91	10	20	26	44	1.82
45489388--45489445	21	2.8	21	86	0	80	27	13	27	31	1.94
45492673--45492712	17	2.5	16	84	11	55	75	0	2	22	0.93
45492673--45492712	11	3.7	11	87	12	57	75	0	2	22	0.93
45492818--45492869	10	5.4	9	76	19	52	34	1	1	61	1.18
45492829--45492867	18	2.1	19	90	4	62	35	0	2	61	1.10
45494432--45494520	33	2.6	34	76	13	94	64	2	3	30	1.22
45495375--45495495	61	2.0	61	81	0	143	27	15	24	32	1.96
45498649--45498688	21	1.9	21	85	10	55	45	7	7	40	1.61
45503646--45503767	43	2.8	43	84	1	163	23	17	26	32	1.96
45511288--45511355	34	2.0	35	85	2	93	32	10	14	42	1.80
45511471--45511677	43	4.9	42	76	13	201	22	15	28	33	1.95
45511478--45511679	85	2.4	84	79	10	207	23	15	27	33	1.95
45513856--45513937	30	2.7	30	90	0	119	37	20	17	24	1.93
45518669--45518901	40	5.9	38	76	7	171	32	16	29	21	1.95
45518685--45518903	80	2.7	80	88	2	307	31	17	29	21	1.96
45518712--45518903	40	4.8	39	80	5	233	33	16	28	21	1.95
45529810--45529870	30	2.0	31	84	9	81	36	3	42	18	1.66
45531816--45532000	40	4.6	41	78	5	164	34	18	28	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45531816--45532000	80	2.3	80	82	3	212	34	18	28	18	1.95
45540334--45540369	13	2.7	14	87	12	58	41	13	8	36	1.75
45541873--45542089	27	8.1	27	81	1	211	41	23	17	18	1.90
45541880--45542094	107	2.0	108	81	0	252	40	22	17	19	1.91
45547597--45547649	26	2.0	26	88	3	79	30	13	28	28	1.94
45549812--45549867	22	2.5	22	88	0	76	26	19	32	21	1.97
45563331--45563374	19	2.3	19	84	7	54	50	6	18	25	1.71
45564477--45564637	40	4.0	40	84	3	216	35	14	29	20	1.92
45565386--45565428	22	2.0	21	86	4	59	23	6	2	67	1.27
45567767--45567791	5	5.0	5	100	0	50	40	0	20	40	1.52
45568931--45569026	20	4.8	20	75	10	88	12	28	20	38	1.89
45568932--45569052	60	2.0	62	82	9	151	14	28	19	38	1.91
45569974--45570027	20	2.7	20	88	2	72	44	16	9	29	1.79
45572711--45572942	43	5.5	41	74	9	200	22	17	25	34	1.96
45572711--45572950	85	2.8	84	87	3	311	22	18	25	33	1.97
45580097--45580163	14	4.8	13	76	21	57	74	2	1	20	1.03
45585330--45585470	40	3.5	40	87	2	194	43	18	21	15	1.87
45585555--45585598	21	2.1	21	87	8	63	34	34	0	31	1.58
45596243--45596286	22	2.0	22	82	8	54	27	2	11	59	1.44
45597712--45597753	21	2.0	21	81	9	50	19	14	2	64	1.39
45602252--45602321	9	8.0	9	82	9	74	47	18	0	34	1.49
45602410--45602434	10	2.5	10	100	0	50	48	8	0	44	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45603846--45604024	43	4.2	43	83	0	223	22	16	31	30	1.95
45605409--45605442	17	1.9	18	88	5	52	8	5	32	52	1.56
45606050--45606088	21	1.9	19	85	10	51	71	2	2	23	1.10
45606374--45606412	20	2.0	20	85	10	53	61	0	0	38	0.96
45610353--45610434	33	2.6	31	76	14	87	35	4	3	56	1.39
45610516--45610542	13	2.1	13	100	0	54	66	0	0	33	0.92
45611707--45611745	18	2.0	20	90	9	64	15	0	7	76	0.99
45615947--45616341	159	2.5	159	98	0	763	38	13	10	37	1.79
45616254--45616280	11	2.5	11	100	0	54	33	0	11	55	1.35
45618523--45618590	11	5.9	11	69	27	52	75	2	4	17	1.10
45618525--45618589	17	3.7	18	69	22	50	73	3	4	18	1.13
45619156--45619222	20	3.3	20	91	0	107	17	44	17	19	1.87
45623552--45623611	30	2.0	30	86	0	84	13	26	36	23	1.92
45628011--45628050	19	2.1	19	100	0	80	22	17	5	55	1.61
45630042--45630107	23	3.0	22	82	10	73	33	3	0	63	1.10
45631780--45631908	62	2.1	62	82	0	150	23	28	24	23	1.99
45632507--45632562	28	1.9	30	89	7	89	78	1	16	3	0.97
45633579--45633618	18	2.2	19	86	13	57	50	7	0	42	1.30
45636428--45636625	51	3.9	51	78	6	222	24	15	28	31	1.95
45638799--45638872	31	2.3	32	77	13	82	67	10	1	20	1.28
45648205--45648279	31	2.3	32	77	11	82	68	10	1	20	1.27
45648489--45648532	18	2.5	17	81	7	52	9	52	2	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45651107--45651398	50	5.7	50	81	3	291	27	21	28	23	1.99
45653122--45653157	16	2.2	17	95	5	65	72	0	0	27	0.85
45654449--45654495	10	4.6	10	77	12	51	27	0	4	68	1.08
45655318--45655371	19	2.8	19	88	0	90	35	9	16	38	1.81
45655307--45655378	38	2.0	34	82	15	83	36	9	16	37	1.82
45655578--45655622	23	2.0	23	81	0	54	22	0	15	62	1.33
45655838--45655881	3	14.7	3	80	0	52	25	0	2	72	0.96
45661805--45661863	25	2.3	26	82	8	77	33	16	23	25	1.96
45663603--45663763	54	3.0	54	82	1	180	35	11	27	24	1.91
45665394--45665428	12	2.7	13	91	8	54	37	8	17	37	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185