genome.fa.s17.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  139  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43018019--43018080	31	2.0	31	100	0	124	35	12	22	29	1.91
43023707--43023755	24	2.0	24	88	7	73	65	4	18	12	1.41
43026287--43026473	50	3.7	50	70	6	126	32	22	22	22	1.98
43026212--43026582	100	3.7	100	83	4	428	29	23	22	23	1.99
43026344--43026499	50	3.1	49	70	3	159	33	21	21	23	1.97
43031032--43031073	17	2.5	17	92	0	66	35	2	2	59	1.23
43031029--43031074	20	2.3	20	85	7	58	34	2	2	60	1.21
43037226--43037782	44	12.7	44	68	11	250	30	18	22	28	1.97
43037353--43037465	46	2.5	44	78	9	104	29	21	19	30	1.97
43037226--43037665	175	2.5	175	93	0	772	31	17	21	29	1.96
43037533--43037850	132	2.4	132	92	0	537	32	19	21	27	1.97
43037844--43038214	100	3.7	99	83	5	435	30	25	22	21	1.99
43037866--43038214	50	7.0	49	67	6	173	31	25	21	21	1.98
43038129--43038292	86	1.9	85	90	3	258	28	27	23	20	1.99
43039705--43039744	17	2.4	17	91	0	62	35	2	2	60	1.24
43039702--43039743	14	2.7	16	82	10	52	35	2	2	59	1.23
43041897--43042005	47	2.2	48	83	6	139	34	28	13	22	1.93
43041952--43042059	53	2.0	53	85	3	146	35	25	12	26	1.92
43047121--43047284	79	2.1	78	86	2	229	29	17	10	42	1.82
43058156--43058186	15	2.1	15	100	0	62	25	12	25	35	1.92
43060210--43060292	21	4.0	21	73	6	78	15	25	19	39	1.91
43060167--43060292	63	2.0	63	87	3	182	15	23	18	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43061033--43061144	42	2.7	42	88	0	161	16	20	34	27	1.95
43069094--43069123	13	2.3	13	100	0	60	53	10	0	36	1.35
43070312--43070363	24	2.2	24	85	0	68	48	11	3	36	1.58
43074638--43074689	24	2.2	24	82	0	59	48	5	5	40	1.51
43090079--43090123	18	2.6	18	82	3	56	28	0	2	68	1.01
43090842--43090875	7	4.9	7	96	0	59	8	14	2	73	1.19
43090842--43090883	21	2.0	21	86	9	59	9	16	2	71	1.23
43096654--43096696	22	2.0	22	90	0	68	58	11	4	25	1.52
43112336--43112599	101	2.6	101	96	0	483	29	23	14	32	1.94
43112339--43112599	51	5.2	50	90	1	405	29	22	14	32	1.94
43119072--43119335	101	2.6	101	95	0	474	29	22	15	32	1.95
43119075--43119335	51	5.2	51	89	1	391	29	22	15	32	1.95
43124919--43124974	21	2.7	21	97	0	103	28	35	8	26	1.87
43130572--43130623	27	2.0	26	82	14	63	53	5	3	36	1.43
43141009--43141034	13	2.0	13	100	0	52	23	15	15	46	1.83
43145235--43145261	3	9.0	3	100	0	54	33	0	33	33	1.58
43146715--43146744	9	3.3	9	100	0	60	0	0	20	80	0.72
43153880--43153911	14	2.3	14	94	0	55	34	46	15	3	1.62
43170046--43170845	132	6.1	132	96	1	1453	28	16	25	30	1.97
43173576--43173793	106	2.1	106	92	1	366	31	19	17	30	1.95
43175092--43175131	20	2.0	21	90	5	64	30	0	2	67	1.04
43176222--43176461	120	2.0	120	92	1	401	33	0	24	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43181798--43181867	25	2.8	25	88	0	95	32	17	31	18	1.94
43186791--43186837	13	3.4	14	79	8	51	61	27	4	6	1.39
43187185--43187259	34	2.2	34	83	9	91	62	1	28	8	1.31
43197008--43197059	20	2.6	20	87	0	77	50	0	25	25	1.50
43205532--43205625	40	2.3	40	77	0	107	23	19	19	38	1.93
43205464--43205631	80	2.1	80	82	2	203	25	19	18	36	1.94
43212316--43212361	18	2.6	18	92	0	83	32	23	0	43	1.54
43215263--43215302	21	2.0	21	90	5	64	35	0	25	40	1.56
43217994--43218019	11	2.4	11	100	0	52	50	7	42	0	1.31
43218682--43218729	3	16.0	3	86	0	69	35	0	4	60	1.16
43218870--43218941	24	2.9	24	78	15	67	44	0	22	33	1.53
43237196--43237240	3	15.0	3	88	0	63	2	0	26	71	0.98
43248426--43248477	18	2.9	17	80	13	52	34	0	15	50	1.45
43258774--43258812	18	2.2	17	86	13	53	33	0	20	46	1.51
43259039--43259114	23	3.3	23	83	0	107	22	21	25	31	1.98
43264428--43264470	18	2.4	18	84	0	59	39	4	27	27	1.76
43269922--43269992	36	2.0	35	88	2	106	40	15	19	23	1.90
43272133--43272158	11	2.4	11	100	0	52	26	46	7	19	1.77
43278415--43278467	23	2.3	23	93	0	97	20	20	26	32	1.98
43285479--43285517	18	2.2	17	86	13	53	33	0	20	46	1.51
43285743--43285818	23	3.3	23	94	0	134	21	19	26	32	1.97
43291419--43291653	44	5.4	42	77	9	206	31	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43291451--43291653	86	2.3	86	79	9	234	31	25	17	26	1.97
43291451--43291670	44	5.1	43	80	4	219	31	26	17	25	1.97
43291451--43291688	86	2.8	84	76	12	232	31	26	17	24	1.97
43291733--43291770	18	2.1	19	90	5	60	36	0	0	63	0.95
43292745--43292775	16	1.9	16	100	0	62	38	12	12	35	1.82
43293760--43293799	21	2.0	21	90	5	64	37	0	5	57	1.21
43295048--43295073	8	3.2	8	100	0	52	65	11	11	11	1.48
43295940--43296134	41	4.8	41	75	10	193	32	27	16	23	1.96
43295948--43296127	82	2.2	82	88	2	263	31	27	17	24	1.97
43296200--43296275	39	1.9	39	86	2	107	25	25	18	31	1.97
43296194--43296317	40	3.1	39	77	3	131	20	20	19	39	1.93
43297838--43298215	27	14.0	27	84	1	391	43	21	16	19	1.88
43297840--43298216	54	7.0	54	83	2	454	43	20	16	19	1.88
43297838--43298215	81	4.7	81	85	2	454	43	21	16	19	1.88
43305294--43305363	36	1.9	36	91	0	113	45	15	20	18	1.85
43307074--43307105	11	2.6	13	85	14	50	75	0	0	25	0.81
43313967--43314004	16	2.3	17	81	9	51	57	5	0	36	1.21
43316170--43316212	22	1.9	23	85	4	61	46	2	6	44	1.43
43316408--43316520	57	2.0	57	94	0	199	46	9	5	38	1.59
43316937--43317014	33	2.4	32	85	10	106	38	0	2	58	1.12
43316958--43317029	18	4.2	18	77	10	87	41	0	1	56	1.07
43317099--43317199	23	4.5	21	84	9	87	43	0	1	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43317115--43317199	23	3.7	23	90	4	127	45	0	2	51	1.13
43317098--43317201	22	4.7	22	83	9	122	42	0	1	55	1.10
43317185--43317220	16	2.2	16	100	0	72	36	0	0	63	0.94
43317279--43317324	11	4.2	10	89	10	56	15	2	8	73	1.16
43317580--43317623	19	2.4	19	92	3	72	52	0	4	43	1.22
43321798--43321834	14	2.6	14	100	0	74	21	0	13	64	1.27
43325121--43325390	145	1.9	145	92	0	459	39	22	7	30	1.82
43325569--43325647	21	3.7	22	83	6	85	59	2	0	37	1.11
43325728--43325767	17	2.3	18	82	8	55	60	0	0	40	0.97
43325694--43325798	21	4.7	21	79	15	104	56	0	0	41	1.12
43325815--43325852	13	3.1	13	85	11	53	73	10	0	15	1.09
43336074--43336167	47	2.0	47	100	0	188	48	6	6	38	1.54
43336369--43336399	16	1.9	16	93	0	53	16	0	6	77	0.97
43337943--43338013	21	3.4	21	73	13	74	49	0	1	49	1.09
43337961--43338025	21	3.1	22	74	14	66	47	0	0	52	1.00
43338134--43338170	16	2.3	17	81	13	51	59	0	2	37	1.12
43338312--43338373	29	2.1	30	85	14	85	27	12	6	53	1.63
43338323--43338380	30	2.0	29	83	10	73	27	15	6	50	1.70
43348756--43348794	20	1.9	21	89	5	62	43	2	7	46	1.46
43356973--43357038	32	2.1	32	100	0	132	50	12	15	22	1.77
43363176--43363250	27	2.7	29	81	8	75	38	1	1	58	1.15
43363299--43363359	24	2.4	25	83	5	70	31	1	1	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43363391--43363432	20	2.1	20	86	0	57	23	2	2	71	1.10
43363413--43363451	16	2.5	15	81	18	53	30	0	2	66	1.05
43369164--43369211	20	2.5	19	80	12	53	39	6	6	47	1.54
43369481--43369568	29	3.0	30	73	9	108	40	4	18	36	1.71
43373977--43374227	68	3.7	68	80	0	277	35	18	19	27	1.95
43373974--43374219	136	1.8	136	84	1	332	36	18	18	26	1.94
43382279--43382447	68	2.5	68	83	1	214	33	17	20	28	1.96
43385530--43385643	42	2.7	43	72	11	119	32	26	15	25	1.96
43386395--43386420	10	2.6	10	100	0	52	61	19	7	11	1.53
43388259--43388304	19	2.4	19	89	7	67	43	4	10	41	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185