genome.fa.s17.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  165  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50618547--50618576	15	2.0	15	93	0	51	56	0	6	36	1.26
50623223--50623316	48	2.0	48	87	8	138	40	27	12	19	1.88
50628632--50628719	43	2.0	43	97	0	167	29	17	18	35	1.93
50632037--50632429	46	8.8	46	88	7	555	29	21	15	34	1.93
50632312--50632449	36	3.6	36	78	17	159	26	20	14	38	1.91
50632265--50632488	82	2.8	82	90	5	358	27	21	14	37	1.92
50636039--50636366	110	3.0	110	95	0	575	33	20	16	30	1.94
50636474--50636509	18	2.1	17	89	5	54	72	8	5	13	1.27
50636821--50636865	18	2.4	19	85	11	65	60	2	4	33	1.29
50636874--50636909	3	12.0	3	87	0	54	63	2	2	30	1.22
50638001--50638041	21	1.9	22	90	5	66	2	4	41	51	1.36
50648724--50648765	3	14.0	3	100	0	84	66	0	0	33	0.92
50650782--50650951	72	2.4	72	89	2	261	30	18	24	27	1.98
50650852--50651294	114	3.9	114	92	2	721	25	20	26	27	1.99
50650852--50651294	229	1.9	227	91	2	728	25	20	26	27	1.99
50651194--50651352	73	2.2	73	88	0	228	25	21	23	28	1.99
50651706--50651749	17	2.7	17	89	6	65	29	0	27	43	1.55
50652030--50652067	14	2.7	15	84	12	53	26	0	28	44	1.54
50652090--50652121	15	2.2	14	94	5	55	25	0	37	37	1.56
50652087--50652158	29	2.5	30	69	15	69	25	2	37	34	1.70
50652564--50652664	47	2.2	46	90	3	157	48	7	0	43	1.32
50655777--50655806	14	2.1	14	100	0	60	23	43	0	33	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50656968--50656997	15	2.0	15	93	0	51	50	0	33	16	1.46
50657214--50657269	22	2.5	23	79	5	60	39	1	1	57	1.20
50657230--50657262	16	2.1	16	88	5	50	36	0	3	60	1.12
50657334--50657517	43	4.3	43	83	3	181	26	17	27	28	1.97
50657667--50658360	132	5.3	132	83	4	845	26	24	19	29	1.99
50657667--50658360	254	2.7	259	86	3	934	26	24	19	29	1.99
50664154--50664197	21	2.1	21	100	0	88	25	31	11	31	1.91
50664582--50664615	16	2.1	16	88	0	50	44	20	14	20	1.87
50673504--50673574	24	2.8	24	71	14	63	57	0	1	40	1.07
50678202--50678236	15	2.3	15	90	5	52	31	0	5	62	1.18
50682635--50682670	16	2.2	16	90	0	54	77	0	0	22	0.76
50692360--50692415	13	4.5	12	75	14	51	50	0	0	50	1.00
50692360--50692419	18	3.2	19	76	23	56	50	0	0	50	1.00
50694107--50694144	18	2.1	19	85	5	51	52	10	0	36	1.36
50694108--50694151	11	4.4	11	78	18	51	50	9	0	40	1.34
50694158--50694203	24	1.9	24	83	16	60	50	17	0	32	1.47
50694401--50694438	19	2.0	20	84	5	51	36	7	2	52	1.45
50695819--50695940	37	3.1	37	80	14	145	25	30	22	21	1.99
50695807--50696044	43	5.7	43	80	7	256	27	26	20	24	1.99
50695808--50696064	87	3.1	85	81	7	276	29	27	19	23	1.98
50697103--50697143	21	2.0	21	95	4	75	63	0	0	36	0.95
50702587--50702628	22	1.9	22	90	0	66	9	14	16	59	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50715975--50716018	23	1.9	23	90	0	70	45	0	0	54	0.99
50717746--50717783	21	1.9	20	89	10	60	39	0	0	60	0.97
50717746--50717786	17	2.3	18	87	8	57	36	0	0	63	0.95
50721196--50721540	172	2.0	172	97	1	647	39	17	13	30	1.88
50723555--50723588	16	2.1	17	88	5	52	73	2	0	23	0.97
50724167--50724248	19	4.4	18	79	14	78	43	9	12	34	1.75
50724167--50724252	36	2.3	38	83	13	108	45	10	11	32	1.75
50724185--50724261	19	4.1	19	83	6	86	41	9	14	35	1.77
50724379--50724465	17	5.0	17	77	14	79	45	10	12	31	1.76
50724409--50724467	20	3.0	20	72	18	61	37	10	11	40	1.76
50724392--50724467	38	2.1	36	87	5	107	40	10	11	36	1.76
50724185--50724467	18	15.3	18	70	19	129	44	10	12	33	1.76
50724381--50724490	17	6.4	16	73	14	69	43	11	12	31	1.79
50724553--50724600	17	2.7	18	76	23	57	41	10	16	31	1.82
50725183--50725237	24	2.3	24	93	0	101	0	25	9	65	1.22
50725772--50725888	30	3.9	30	80	3	130	43	2	22	31	1.67
50725759--50725888	60	2.2	59	80	4	154	43	2	20	33	1.65
50725884--50725918	14	2.4	15	90	4	54	28	0	2	68	1.04
50726160--50726378	54	4.1	55	85	10	299	36	17	15	29	1.92
50726160--50726370	107	2.0	104	90	4	334	36	18	15	29	1.92
50726357--50726391	14	2.5	14	90	0	52	60	2	17	20	1.49
50726455--50726483	15	1.9	15	100	0	58	72	6	6	13	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50726455--50726488	13	2.4	14	90	9	52	70	8	8	11	1.34
50726479--50726726	85	2.8	87	81	10	308	36	18	18	26	1.94
50726639--50726672	16	2.1	16	88	0	50	64	5	11	17	1.45
50726479--50726733	91	2.9	88	83	9	324	36	18	18	26	1.94
50726656--50726970	121	2.6	121	92	2	513	37	21	14	26	1.92
50727057--50727246	69	2.8	69	76	4	177	34	20	13	32	1.91
50726746--50728570	385	4.8	384	94	2	3200	35	20	13	30	1.91
50726813--50728570	192	9.2	193	96	2	3194	35	20	13	30	1.91
50739918--50739998	37	2.2	37	82	8	94	48	13	11	27	1.76
50739946--50740206	18	14.1	18	70	17	117	45	10	11	32	1.74
50739930--50740016	38	2.3	37	81	11	97	45	10	10	33	1.72
50739930--50740012	19	4.4	19	75	17	66	44	9	10	34	1.72
50739972--50740025	20	2.7	19	82	5	63	46	9	11	33	1.71
50739948--50740025	19	4.1	19	79	9	79	42	8	12	35	1.75
50740170--50740257	27	4.2	20	70	24	65	39	11	11	37	1.77
50740157--50740250	45	2.1	44	84	7	118	46	12	12	27	1.78
50740176--50740229	27	2.0	28	96	3	101	46	14	9	29	1.76
50740074--50740257	64	2.9	64	81	8	207	45	10	10	33	1.74
50740216--50740282	18	3.8	18	70	5	57	35	11	14	37	1.84
50740140--50740335	97	2.0	97	82	5	234	42	10	13	32	1.79
50740114--50740258	62	2.3	61	81	11	177	46	11	11	30	1.76
50740202--50740294	34	2.6	35	83	5	116	38	10	12	37	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50740217--50740281	17	3.8	17	72	11	60	36	12	13	36	1.83
50740345--50740392	17	2.7	18	76	23	57	41	10	16	31	1.82
50740820--50740852	15	2.2	15	89	10	50	0	12	0	87	0.53
50740974--50741028	24	2.3	24	93	0	101	0	25	9	65	1.22
50741564--50741680	30	3.9	30	82	3	130	44	3	22	29	1.69
50741551--50741680	60	2.2	59	80	4	154	43	3	20	31	1.70
50745387--50745424	19	2.1	18	85	14	51	39	0	5	55	1.23
50745763--50745803	6	6.7	6	91	2	64	0	29	0	70	0.87
50745769--50745804	18	2.0	18	100	0	72	0	27	0	72	0.85
50748843--50748937	47	2.0	47	97	2	183	18	6	16	57	1.60
50748858--50748956	47	2.1	47	84	3	128	24	5	16	54	1.62
50755931--50755975	24	1.9	23	86	4	63	66	0	2	31	1.04
50759684--50759761	41	1.9	41	86	5	113	58	3	0	37	1.16
50759723--50759756	17	2.0	17	88	11	52	70	2	0	26	1.01
50760461--50760518	20	2.8	20	77	12	64	62	8	6	22	1.48
50762657--50762686	14	2.1	14	93	0	51	83	3	0	13	0.77
50763389--50763442	27	2.0	26	85	3	72	70	7	11	11	1.34
50764318--50764833	44	11.7	45	77	6	432	30	26	16	27	1.97
50764391--50764798	132	3.1	132	96	0	726	29	25	16	27	1.97
50769813--50770344	266	2.0	266	97	0	1010	23	25	18	33	1.97
50772403--50772432	14	2.1	14	93	0	51	83	3	0	13	0.77
50773135--50773188	27	2.0	26	85	3	72	70	7	11	11	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50776316--50776347	14	2.3	14	94	0	55	15	6	43	34	1.72
50778025--50778078	23	2.5	22	81	6	65	31	0	24	44	1.54
50778072--50778142	34	2.1	35	83	2	90	25	8	29	36	1.85
50785250--50785309	9	6.7	9	80	0	57	58	5	5	31	1.41
50785242--50785309	18	3.8	18	80	1	66	60	4	4	30	1.36
50785252--50785317	24	2.8	24	86	4	80	56	4	7	31	1.48
50785250--50785309	6	10.0	6	75	0	57	58	5	5	31	1.41
50785271--50785317	9	5.2	9	84	0	58	55	2	8	34	1.42
50786822--50786926	44	2.4	44	79	4	113	29	22	20	26	1.99
50786845--50786939	44	2.1	45	84	5	122	29	22	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185