genome.fa.s17.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  153  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47166108--47166226	57	2.1	58	85	3	159	40	15	21	23	1.90
47173011--47173285	41	6.7	41	91	0	433	28	20	28	22	1.99
47173587--47173656	35	2.0	35	85	0	95	41	11	14	32	1.81
47180094--47180368	41	6.7	41	90	0	424	28	20	28	22	1.98
47182858--47182935	40	2.0	40	82	10	97	33	24	2	39	1.69
47184176--47184240	24	2.9	23	78	17	73	44	1	0	53	1.09
47185121--47185262	25	5.7	25	70	12	103	36	22	15	25	1.93
47185114--47185264	50	3.0	50	86	0	203	37	21	15	25	1.92
47187820--47187861	15	2.7	16	82	14	52	52	2	0	45	1.13
47187829--47187870	15	2.9	15	82	10	52	52	0	0	47	1.00
47187818--47188354	120	4.5	120	94	0	889	48	5	2	43	1.40
47188080--47188114	18	2.0	17	88	5	52	54	0	0	45	0.99
47191131--47191183	23	2.4	23	81	9	58	56	3	3	35	1.35
47191141--47191184	23	2.0	23	90	4	72	52	2	4	40	1.34
47191142--47191196	23	2.4	23	81	6	67	54	3	1	40	1.28
47191889--47192022	19	6.7	21	78	10	77	40	14	6	38	1.72
47191889--47191946	22	2.6	22	81	7	64	41	17	5	36	1.72
47191925--47192035	19	5.8	19	89	0	177	37	13	9	39	1.76
47191925--47192028	38	2.7	38	98	0	199	38	12	8	40	1.74
47192479--47192921	44	10.1	43	63	15	113	28	22	19	28	1.98
47192364--47193390	132	7.8	132	93	0	1689	29	23	18	28	1.98
47192981--47193307	44	7.4	44	63	16	122	29	23	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47198887--47198920	4	8.2	4	87	6	50	73	0	2	23	0.97
47198887--47198922	13	2.8	13	91	4	56	72	0	2	25	0.98
47208660--47208788	64	2.0	64	92	3	215	32	11	29	26	1.91
47209585--47209849	140	1.9	140	99	0	521	24	16	26	33	1.96
47210116--47210339	58	3.9	58	84	3	256	35	8	19	37	1.81
47210402--47210687	69	4.1	69	77	3	245	18	21	24	34	1.96
47222475--47222512	2	19.0	2	100	0	76	50	50	0	0	1.00
47223571--47223608	2	19.0	2	88	0	58	47	2	2	47	1.30
47226358--47226399	17	2.4	17	84	11	50	71	0	16	11	1.14
47228589--47228637	22	2.4	22	80	19	61	16	12	14	57	1.66
47229186--47229233	23	2.1	23	88	7	71	52	16	2	29	1.56
47231662--47231722	24	2.6	24	94	5	108	54	0	16	29	1.43
47233908--47234049	68	2.1	68	87	0	203	34	16	24	23	1.95
47240243--47240295	25	2.2	24	82	3	61	33	20	24	20	1.97
47240280--47240432	64	2.4	64	91	0	243	37	21	16	24	1.94
47244855--47244889	13	2.7	13	86	0	52	80	8	0	11	0.92
47250038--47250077	19	2.1	19	100	0	80	22	5	25	47	1.71
47254490--47254547	10	5.8	10	76	13	57	27	3	20	48	1.66
47254518--47254556	19	2.1	19	100	0	78	23	5	25	46	1.73
47256179--47256241	24	2.6	24	80	9	74	39	11	15	33	1.83
47256362--47256731	54	6.9	54	82	4	390	38	13	21	25	1.91
47256386--47256730	161	2.1	162	84	2	460	38	14	22	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47263046--47263221	37	4.8	37	96	0	298	39	13	21	26	1.90
47263184--47263307	46	2.8	46	91	3	200	33	16	22	27	1.96
47270745--47270920	37	4.8	37	96	0	298	39	13	21	26	1.90
47270883--47271006	46	2.8	46	91	3	200	33	16	22	27	1.96
47284663--47284841	87	2.1	87	95	0	322	25	11	26	36	1.89
47286399--47286630	114	2.0	113	95	0	419	39	15	8	37	1.77
47287710--47287769	30	2.0	31	86	3	86	40	0	40	20	1.52
47287905--47287945	20	2.0	21	85	9	57	43	0	29	26	1.55
47287983--47288010	9	3.1	9	100	0	56	32	10	10	46	1.73
47288202--47288312	31	3.7	30	78	8	100	33	10	14	41	1.80
47292746--47292805	29	2.0	29	87	9	86	53	5	1	40	1.33
47292745--47292813	29	2.4	29	81	11	72	57	4	1	36	1.27
47316759--47316949	36	5.0	36	79	12	211	28	20	13	37	1.90
47316831--47316985	46	3.6	46	76	16	186	28	21	12	36	1.91
47316795--47316985	82	2.3	82	92	0	310	28	21	12	37	1.89
47316733--47316944	118	1.8	117	94	1	379	29	19	13	36	1.91
47319268--47319415	73	2.0	73	90	0	233	20	19	14	44	1.86
47322181--47322240	8	7.5	8	85	7	68	65	3	1	30	1.19
47322392--47322438	25	2.0	24	87	8	69	51	6	8	34	1.58
47322401--47322454	22	2.3	24	84	9	67	51	7	7	33	1.58
47322473--47322602	23	5.6	25	72	17	84	58	3	4	33	1.34
47332736--47332881	30	4.9	29	84	3	170	20	4	47	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47340967--47340992	13	2.0	13	100	0	52	53	7	7	30	1.57
47341505--47341566	29	2.2	28	88	8	90	37	29	22	11	1.89
47346058--47346096	16	2.5	16	80	19	55	69	0	25	5	1.09
47350265--47350327	18	3.5	18	85	8	76	63	9	1	25	1.34
47350352--47350395	18	2.4	18	84	0	52	50	2	0	47	1.13
47350570--47350599	11	2.7	11	100	0	60	10	0	20	70	1.16
47366199--47366328	50	2.5	52	77	6	140	33	13	13	38	1.85
47367509--47367541	17	2.0	17	88	5	50	54	0	12	33	1.37
47368774--47368826	21	2.5	21	93	0	88	15	18	41	24	1.89
47370277--47370508	70	3.3	70	88	1	322	29	18	23	28	1.98
47370300--47370405	34	3.1	34	71	10	106	30	18	23	27	1.98
47374718--47374749	15	2.1	16	94	5	57	46	0	9	43	1.35
47374881--47375017	25	5.7	25	80	10	137	18	23	18	40	1.91
47381515--47381545	16	1.9	16	93	0	53	9	9	9	70	1.33
47386544--47386580	18	2.1	18	89	0	56	13	16	29	40	1.86
47387445--47387491	21	2.2	22	92	3	78	21	38	19	21	1.94
47394170--47394260	22	4.0	22	69	10	76	41	2	1	54	1.19
47394172--47394263	45	2.0	45	81	8	107	42	2	1	54	1.19
47417990--47418029	20	2.0	20	100	0	80	35	0	10	55	1.34
47419338--47419367	12	2.5	12	94	0	51	53	0	10	36	1.35
47420606--47420750	23	6.3	23	88	3	220	30	24	22	22	1.99
47420606--47420749	69	2.1	69	94	0	252	30	25	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47424866--47424924	3	20.0	3	85	3	75	32	5	1	61	1.28
47425603--47425881	110	2.6	109	91	1	452	31	16	19	32	1.94
47428665--47428706	22	2.0	21	85	4	57	69	0	7	23	1.13
47436655--47436683	8	3.8	8	90	9	51	65	0	0	34	0.93
47441738--47441806	28	2.5	27	77	13	70	63	0	0	36	0.94
47452335--47452393	22	2.7	22	84	7	68	33	0	38	27	1.57
47452639--47452683	6	7.2	6	83	16	56	77	0	2	20	0.87
47452628--47452688	17	3.7	15	77	16	50	78	3	1	16	0.96
47452634--47452677	17	2.4	19	88	7	65	79	2	2	15	0.93
47452639--47452707	29	2.4	29	76	11	70	73	0	4	21	1.00
47474936--47475105	18	10.0	17	76	15	156	40	0	1	57	1.11
47474951--47475009	26	2.3	25	85	8	82	40	0	1	57	1.09
47474964--47475019	15	4.0	15	73	17	57	44	0	0	55	0.99
47474794--47475087	120	2.5	120	92	2	479	42	1	3	53	1.26
47474872--47475090	41	5.6	40	66	25	119	41	1	3	54	1.25
47474982--47475119	51	2.5	54	72	17	124	41	0	0	57	1.09
47478100--47478155	26	2.2	26	93	0	94	44	14	17	23	1.85
47481224--47481444	90	2.4	90	84	2	273	42	12	13	31	1.82
47482303--47482333	3	10.3	3	100	0	62	0	32	0	67	0.91
47485078--47487282	875	2.5	875	86	2	3124	37	17	13	31	1.88
47487657--47487717	28	2.2	29	85	8	90	31	19	16	32	1.94
47487669--47487728	15	4.1	15	76	8	61	28	18	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47487743--47487898	24	6.6	24	70	10	72	35	16	19	28	1.93
47487872--47488036	58	2.8	59	83	4	210	37	13	16	32	1.88
47488014--47488059	18	2.6	17	83	10	56	36	10	19	32	1.87
47488212--47488257	16	2.9	16	80	0	56	26	19	23	30	1.98
47488247--47488315	16	4.5	16	82	7	90	20	10	30	39	1.85
47488244--47488315	31	2.4	30	85	2	99	19	9	33	37	1.85
47490409--47490446	20	1.9	20	88	0	58	57	0	7	34	1.28
47495748--47495785	16	2.4	16	90	0	58	31	0	34	34	1.58
47495916--47495956	16	2.6	16	84	11	57	53	0	0	46	1.00
47495916--47495966	15	3.5	15	84	10	61	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185