genome.fa.s17.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  161  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49634755--49634811	23	2.3	23	82	8	60	21	5	3	70	1.22
49634921--49634986	22	3.1	22	82	4	73	36	7	21	34	1.82
49639942--49639981	3	13.7	3	94	5	73	65	0	35	0	0.93
49640157--49640222	26	2.5	26	97	2	123	34	0	7	57	1.27
49640304--49640334	11	2.8	11	95	0	53	19	0	6	74	1.03
49640408--49640480	16	4.4	16	66	24	53	20	0	12	67	1.23
49642485--49642516	8	4.0	8	95	0	55	50	21	0	28	1.49
49642510--49642589	27	3.2	26	63	26	64	47	10	8	33	1.68
49642503--49642595	48	1.9	48	97	0	177	48	10	7	33	1.66
49646824--49646890	17	3.8	17	77	15	64	29	0	2	67	1.06
49648436--49648471	18	2.0	18	88	0	54	16	0	2	80	0.83
49656711--49656817	41	2.6	40	83	5	124	28	17	21	31	1.96
49664899--49664946	12	4.0	12	78	8	53	56	2	0	41	1.11
49669542--49669598	26	2.1	27	83	3	71	29	1	3	64	1.20
49672325--49672483	35	4.5	35	93	0	246	16	9	31	42	1.81
49676098--49676157	10	6.5	10	77	14	58	63	0	1	35	1.05
49676098--49676154	9	6.3	9	84	8	71	64	0	1	33	1.04
49676098--49676145	17	2.7	18	83	6	62	64	0	2	33	1.05
49676098--49676154	19	3.2	17	82	7	69	64	0	1	33	1.04
49677162--49677220	28	2.1	29	83	3	75	35	3	3	57	1.32
49677178--49677220	18	2.3	18	84	4	50	34	4	2	58	1.32
49686077--49686144	16	4.2	16	90	7	102	27	0	33	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49686077--49686144	32	2.1	32	94	0	118	27	0	33	38	1.57
49686274--49686583	157	2.0	157	94	0	539	44	3	4	47	1.40
49686320--49686641	157	2.0	155	82	5	358	46	4	4	45	1.43
49687462--49687491	13	2.3	13	100	0	60	60	13	6	20	1.55
49690663--49690694	6	5.7	6	85	14	50	81	0	0	18	0.70
49696947--49697003	30	2.0	29	86	6	80	22	26	7	43	1.78
49697657--49697693	19	1.9	19	100	0	74	62	0	0	37	0.96
49697660--49697723	30	2.1	30	82	0	74	64	0	1	34	1.03
49697907--49697982	2	44.0	2	68	27	50	47	1	1	50	1.18
49697905--49697982	32	2.6	29	82	13	95	47	2	1	48	1.23
49697908--49697984	7	10.3	7	81	13	82	46	1	1	50	1.17
49707050--49707126	32	2.4	32	80	0	91	44	6	24	24	1.77
49707570--49707607	11	3.3	12	82	14	53	36	0	0	63	0.95
49707724--49707786	30	2.1	30	90	0	99	55	14	4	25	1.58
49712418--49712571	26	5.2	31	65	26	84	43	0	3	51	1.24
49712358--49712967	120	5.1	120	93	2	1046	42	1	4	51	1.28
49712552--49712589	18	2.2	17	90	4	58	36	2	0	60	1.11
49712360--49712868	61	8.5	57	65	21	197	42	1	4	52	1.29
49712794--49712829	18	2.0	18	100	0	72	33	0	0	66	0.92
49713107--49713202	45	2.2	44	83	5	113	37	28	4	30	1.76
49713179--49713248	32	2.2	32	84	0	86	25	27	4	42	1.73
49713192--49713252	16	3.8	16	80	0	77	26	29	4	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49719473--49719513	21	2.0	21	90	0	64	19	29	21	29	1.98
49727843--49727898	23	2.4	23	90	3	85	44	5	3	46	1.43
49731176--49731228	23	2.3	23	86	0	79	37	16	13	32	1.88
49734892--49734938	22	2.0	25	84	12	64	46	0	17	36	1.48
49737425--49737492	30	2.2	31	79	10	77	33	2	8	54	1.47
49738575--49738604	14	2.1	14	100	0	60	33	46	13	6	1.69
49743690--49743719	14	2.1	14	100	0	60	33	46	13	6	1.69
49746178--49746299	57	2.1	60	81	15	141	44	14	13	27	1.83
49755094--49755129	6	6.0	6	86	0	54	61	0	22	16	1.35
49761395--49761463	31	2.2	31	84	5	86	53	4	1	40	1.30
49761473--49761515	22	2.0	22	85	0	59	55	4	0	39	1.20
49763255--49763304	3	16.7	3	91	0	82	68	0	4	28	1.08
49770130--49770167	19	2.0	19	100	0	76	26	0	31	42	1.56
49777837--49778112	151	1.8	151	92	0	471	27	30	17	24	1.97
49781195--49781240	25	1.9	23	86	8	65	54	4	2	39	1.32
49782067--49782114	13	3.7	13	77	8	53	41	14	0	43	1.45
49784196--49784239	10	4.2	11	88	11	58	77	2	0	20	0.88
49784213--49784239	5	5.4	5	100	0	54	81	0	0	18	0.69
49784734--49784777	18	2.4	19	88	3	63	20	11	0	68	1.20
49787568--49787612	20	2.2	20	84	0	63	77	2	0	20	0.87
49791912--49792098	51	3.7	51	78	3	198	31	27	16	24	1.96
49791908--49792097	101	1.9	101	84	3	238	32	28	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49793395--49793455	16	3.9	15	81	10	68	45	8	18	27	1.77
49793432--49793525	44	2.1	44	84	7	118	35	6	22	36	1.80
49798925--49799017	48	1.9	48	97	0	177	15	19	21	44	1.87
49808384--49808428	14	3.0	15	83	9	56	66	0	24	8	1.20
49808617--49808682	31	2.2	31	86	8	91	22	15	21	40	1.90
49815299--49815350	20	2.7	19	82	17	63	34	0	5	59	1.21
49815307--49815348	17	2.3	19	88	12	61	33	0	4	61	1.17
49815335--49815361	13	2.1	13	100	0	54	22	0	7	70	1.12
49821565--49821603	20	2.0	20	100	0	78	33	15	25	25	1.95
49824514--49824588	38	2.0	38	91	0	123	29	10	9	50	1.68
49831137--49831266	43	3.0	43	83	0	170	36	24	14	24	1.93
49846014--49846096	42	2.0	42	86	6	116	26	21	18	33	1.96
49846630--49846828	7	28.0	7	69	13	50	41	36	0	22	1.58
49846627--49846750	43	3.0	43	82	3	128	40	40	0	19	1.52
49846731--49846764	15	2.3	15	94	0	59	41	38	0	20	1.53
49846781--49846841	14	4.4	14	87	0	77	44	31	3	21	1.68
49847163--49847258	40	2.4	40	83	0	120	29	27	18	25	1.98
49847298--49847384	40	2.2	39	87	4	122	26	21	21	29	1.99
49849740--49849779	18	2.1	18	90	9	62	52	0	0	47	1.00
49851416--49851453	18	2.2	17	86	9	51	23	0	0	76	0.79
49853624--49853656	17	1.9	17	93	0	57	9	0	27	63	1.24
49864049--49864098	22	2.3	22	92	0	82	28	2	42	28	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49864176--49864222	22	2.2	22	84	3	60	25	0	42	31	1.55
49879655--49879732	19	3.9	19	73	18	61	64	1	2	32	1.15
49879655--49879713	19	3.0	20	80	17	63	66	0	1	32	1.02
49879689--49879722	17	2.0	17	94	0	59	61	0	5	32	1.20
49881984--49882064	30	2.7	29	84	7	90	54	2	7	35	1.42
49885906--49885981	36	2.1	35	82	2	89	61	5	5	27	1.39
49890085--49890124	20	1.9	22	90	10	66	47	0	0	52	1.00
49891220--49891245	10	2.6	10	100	0	52	61	0	0	38	0.96
49896764--49896810	21	2.2	22	92	3	78	21	38	19	21	1.94
49901959--49901989	12	2.6	12	100	0	62	51	6	0	41	1.27
49903576--49903695	40	2.8	44	80	12	151	22	20	23	34	1.97
49903800--49903993	46	4.3	46	65	10	121	31	24	18	25	1.98
49903696--49905040	134	10.1	134	96	0	2426	28	24	20	26	1.99
49904988--49905337	86	4.1	86	91	0	529	27	24	22	26	2.00
49905150--49905283	42	3.1	42	63	19	96	26	23	23	26	2.00
49909478--49909521	19	2.3	20	84	7	56	40	11	20	27	1.86
49911851--49911885	2	17.5	2	87	0	52	51	5	0	42	1.25
49913216--49913346	40	3.3	40	87	7	178	33	22	23	20	1.97
49913387--49913640	41	6.2	41	86	2	332	20	20	30	28	1.98
49913763--49913789	13	2.1	13	100	0	54	33	7	22	37	1.82
49913873--49913976	7	14.4	7	72	15	52	22	0	27	49	1.56
49913938--49913976	20	1.9	21	94	5	71	17	0	28	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49914249--49914320	21	3.4	21	82	1	81	29	0	36	34	1.58
49914273--49914310	7	5.4	7	84	12	51	31	0	36	31	1.58
49917613--49917691	25	3.3	25	79	16	112	34	17	7	40	1.78
49918058--49918212	18	9.0	17	64	22	65	41	1	2	54	1.22
49917856--49918220	38	9.2	39	67	15	180	41	1	4	52	1.27
49917815--49918354	120	4.5	120	89	3	748	42	1	3	52	1.30
49918104--49918146	22	1.9	23	85	4	61	37	0	2	60	1.10
49918298--49918332	18	2.0	17	88	5	52	45	0	0	54	0.99
49918298--49918352	15	3.4	16	80	16	53	47	0	1	50	1.11
49917815--49918354	241	2.2	237	86	7	730	42	1	3	52	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185