genome.fa.s17.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  106  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33523745--33523783	20	2.0	20	89	0	60	43	12	12	30	1.81
33526072--33526133	31	2.0	31	100	0	124	41	16	9	32	1.80
33531681--33531726	21	2.2	20	92	7	83	0	15	13	71	1.14
33532272--33532333	31	2.0	31	100	0	124	41	16	9	32	1.80
33533991--33534142	43	3.6	43	87	2	209	18	31	31	18	1.95
33536513--33536542	8	3.6	8	95	4	51	56	0	0	43	0.99
33536511--33536541	9	3.6	9	91	8	55	58	0	0	41	0.98
33536776--33536876	10	10.4	10	69	18	54	35	1	2	59	1.24
33536810--33536874	29	2.3	28	86	5	87	32	3	3	61	1.27
33540809--33540945	51	2.7	51	79	0	175	39	6	13	40	1.71
33562489--33562529	21	2.0	21	85	4	57	41	7	4	46	1.53
33563524--33563566	23	1.9	22	86	13	61	39	6	16	37	1.75
33563535--33563671	51	2.7	51	77	0	166	38	6	14	40	1.72
33568815--33568850	12	3.0	12	87	0	54	25	0	0	75	0.81
33568852--33568888	16	2.2	18	85	9	51	70	8	0	21	1.13
33569034--33569079	11	4.3	11	80	5	58	76	13	4	6	1.14
33569034--33569090	21	2.7	21	83	2	60	73	12	7	7	1.23
33572645--33572703	27	2.2	27	87	6	84	33	16	27	22	1.95
33577083--33577201	45	2.7	44	85	3	150	47	14	21	17	1.83
33578496--33578558	10	5.9	10	72	20	56	74	7	15	1	1.12
33592085--33592114	14	2.1	15	93	6	53	20	23	20	36	1.95
33604888--33604936	26	1.9	25	87	4	71	36	18	22	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33614714--33614830	62	1.9	59	89	5	180	43	2	3	50	1.32
33615858--33615900	21	2.0	21	81	0	50	41	20	2	34	1.65
33617216--33617255	19	2.1	19	90	0	62	32	5	25	37	1.77
33625526--33625559	18	1.9	17	88	5	50	11	29	44	14	1.81
33626506--33626553	18	2.7	18	78	9	62	41	2	16	39	1.60
33628846--33628896	21	2.4	22	83	3	59	45	9	3	41	1.56
33629458--33629499	21	1.9	23	85	9	61	61	0	4	33	1.17
33630113--33630187	18	4.2	17	83	10	71	36	0	1	62	1.04
33630121--33630218	9	10.7	9	80	15	69	32	1	1	65	1.06
33630113--33630169	27	2.1	27	87	6	80	38	0	0	61	0.96
33630148--33630217	28	2.5	28	83	4	88	30	1	1	67	1.08
33630187--33630237	19	2.8	18	74	11	50	31	3	1	62	1.24
33632867--33632900	14	2.4	14	90	0	50	23	23	0	52	1.47
33632990--33633027	12	2.9	13	84	11	51	39	7	5	47	1.55
33640787--33640825	13	2.8	14	80	11	53	23	25	25	25	2.00
33643366--33643414	24	2.0	24	84	0	62	36	0	40	22	1.54
33644084--33644253	54	3.1	54	85	0	241	42	21	16	19	1.89
33644084--33644253	27	6.3	27	86	0	214	42	21	16	19	1.89
33654292--33654349	21	2.8	21	78	0	62	43	29	13	13	1.83
33673524--33673724	51	4.0	52	78	7	207	24	17	28	29	1.97
33673532--33673716	101	1.8	101	85	3	264	24	17	27	30	1.97
33673720--33673804	46	1.9	43	83	7	107	23	15	27	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33677961--33678028	29	2.3	29	82	5	84	27	29	13	29	1.94
33678135--33678202	29	2.3	29	85	5	93	27	30	13	27	1.94
33678304--33678382	29	2.7	30	82	13	110	29	30	15	25	1.96
33677850--33678351	174	2.9	174	96	0	932	31	24	14	29	1.94
33681346--33681502	45	3.5	45	78	3	163	30	14	23	31	1.94
33686642--33686814	45	3.9	45	79	5	156	27	17	23	31	1.97
33689966--33690034	24	2.7	25	80	13	70	68	4	5	21	1.29
33689966--33690039	27	2.9	25	75	18	64	68	4	5	21	1.26
33693843--33693897	28	1.9	29	81	3	67	67	0	3	29	1.08
33696085--33696117	15	2.2	15	100	0	66	36	0	9	54	1.32
33713008--33713135	40	3.2	39	85	4	175	29	27	19	23	1.98
33713006--33713191	80	2.3	79	81	9	200	27	26	21	23	1.99
33715125--33715264	43	3.3	43	77	7	124	32	26	14	26	1.94
33716370--33716409	22	1.9	21	90	10	64	52	20	2	25	1.59
33716394--33716420	13	2.1	13	100	0	54	48	22	0	29	1.51
33717008--33717141	54	2.5	54	73	4	128	25	21	12	40	1.89
33717206--33717272	24	2.8	24	76	0	80	44	17	7	29	1.76
33717343--33717389	24	2.0	24	95	0	85	38	17	8	36	1.80
33719693--33719731	20	1.9	21	89	5	62	41	0	25	33	1.56
33722626--33722673	10	4.8	10	77	10	53	56	0	2	41	1.11
33749433--33749484	27	1.9	27	84	0	68	55	9	15	19	1.67
33750043--33750176	66	2.0	66	92	0	223	40	7	7	44	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33750494--33750655	85	1.9	85	91	2	263	33	23	22	20	1.97
33750496--33750829	42	7.9	42	84	3	269	26	22	20	29	1.99
33750897--33750930	14	2.4	14	95	0	59	58	20	8	11	1.59
33751155--33751225	21	3.4	21	75	7	72	2	45	18	33	1.64
33756738--33756873	9	16.0	9	71	13	101	31	2	21	44	1.64
33756738--33756872	25	5.3	25	76	7	121	31	2	21	45	1.64
33756738--33756873	16	8.0	18	69	13	101	31	2	21	44	1.64
33756779--33756873	34	2.7	34	78	3	91	33	3	20	43	1.67
33756885--33756923	20	2.0	20	94	0	69	46	5	5	43	1.48
33756905--33757013	37	2.9	37	91	0	173	35	5	11	47	1.62
33756907--33757044	37	3.7	36	75	17	106	34	5	12	48	1.63
33757632--33757696	18	3.6	18	68	12	60	36	3	3	56	1.30
33758793--33758836	19	2.3	19	80	0	52	25	2	40	31	1.68
33759164--33759911	231	3.2	230	89	1	1106	33	20	17	28	1.95
33760972--33761020	18	2.5	21	80	9	59	26	2	10	61	1.39
33761355--33761701	113	3.1	112	77	9	280	29	23	22	23	1.99
33768263--33768308	18	2.5	19	80	20	53	47	21	4	26	1.69
33773180--33773269	29	3.1	29	84	4	103	36	13	24	25	1.92
33778307--33778690	136	2.8	136	87	2	513	20	20	26	32	1.97
33796628--33796676	18	2.7	18	80	0	71	36	18	18	26	1.94
33796840--33797090	27	9.3	27	81	5	276	42	17	21	19	1.89
33796840--33797089	81	3.1	79	82	9	308	42	16	21	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33797268--33797341	26	2.8	26	97	0	139	10	20	28	40	1.86
33797447--33797529	30	2.8	30	83	3	107	24	20	22	32	1.98
33803124--33803173	25	2.0	25	96	0	91	28	12	6	54	1.60
33803357--33803388	14	2.3	14	100	0	64	31	46	15	6	1.71
33808479--33808510	14	2.3	14	100	0	64	31	46	15	6	1.71
33811314--33811519	40	5.2	40	82	2	243	33	17	26	22	1.96
33811370--33811442	20	3.7	20	75	0	65	30	19	31	19	1.96
33811314--33811519	80	2.6	80	85	1	270	33	17	26	22	1.96
33813177--33813581	201	2.0	201	98	0	783	29	20	18	32	1.96
33814714--33814792	40	2.0	40	87	5	115	34	15	27	22	1.94
33816962--33817460	27	18.5	27	82	1	534	43	21	15	19	1.88
33819462--33819809	27	12.9	27	80	1	322	39	21	18	20	1.92
33819462--33819810	81	4.3	81	78	5	375	39	21	18	20	1.92
33820001--33820057	26	2.2	26	87	0	78	22	19	19	38	1.93
33820169--33820275	28	3.8	28	91	0	151	25	23	22	28	1.99
33822035--33822104	27	2.6	27	95	2	113	31	28	12	27	1.93
33822035--33822132	28	3.5	28	90	2	135	31	28	13	26	1.94
33830057--33830126	27	2.6	27	95	2	113	31	28	12	27	1.93
33830057--33830154	28	3.5	28	90	2	135	31	28	13	26	1.94
33833927--33834020	27	3.5	27	80	8	84	39	20	13	26	1.90
33843502--33843646	28	5.2	29	85	11	180	30	22	24	23	1.99
33844010--33844104	27	3.5	26	84	8	127	17	12	20	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33847894--33847959	26	2.6	25	79	9	78	39	15	1	43	1.55
33851761--33851959	26	7.7	26	79	0	191	38	26	14	21	1.91
33851771--33851949	78	2.3	78	83	1	216	40	26	12	20	1.89
33858699--33858805	43	2.5	43	84	4	128	24	24	4	46	1.71
33858698--33858805	42	2.5	42	83	4	128	24	25	4	46	1.71
33865885--33866109	40	5.7	40	85	5	260	24	28	22	24	1.99
33865887--33866109	119	1.9	120	82	6	283	24	28	22	24	2.00
33873900--33874122	119	1.9	120	82	6	283	25	28	21	24	1.99
33873898--33874122	40	5.7	40	83	6	269	25	28	21	24	1.99
33879352--33879398	20	2.4	19	83	13	60	14	2	2	80	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185