genome.fa.s17.2.7.7.80.10.50.1000.172.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  172  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52424399--52424499	51	2.0	51	88	0	148	18	25	29	25	1.98
52424436--52424523	33	2.6	34	82	5	99	17	26	29	27	1.97
52424612--52424760	51	2.9	51	87	0	217	24	21	24	28	1.99
52424714--52424811	33	3.0	33	84	0	115	21	19	27	31	1.97
52425994--52426140	74	2.0	74	89	5	226	32	21	17	28	1.96
52426902--52426940	19	2.0	20	85	9	55	28	0	2	69	1.02
52427298--52427347	20	2.5	20	78	15	57	24	16	6	54	1.64
52427635--52427683	20	2.4	21	86	6	73	18	16	14	51	1.77
52427965--52428011	20	2.2	21	81	11	60	21	14	2	61	1.43
52427974--52428011	20	1.9	20	94	0	67	23	15	2	57	1.51
52429193--52429236	3	14.7	3	100	0	88	68	0	0	31	0.90
52432438--52432476	12	3.2	12	77	0	51	43	0	0	56	0.99
52432614--52432677	7	8.9	7	76	23	62	43	1	1	53	1.19
52432608--52432677	29	2.4	29	82	17	85	42	1	1	54	1.18
52432619--52432677	31	2.0	29	87	12	84	44	1	1	52	1.21
52435005--52435258	33	7.7	32	72	7	168	20	15	26	37	1.93
52435005--52435258	66	3.8	66	80	2	222	20	15	26	37	1.93
52434999--52435255	99	2.6	99	78	2	264	20	15	26	36	1.93
52435193--52435306	51	2.2	51	84	0	138	20	21	24	34	1.97
52435170--52435333	84	2.0	83	81	4	195	21	18	25	35	1.95
52435127--52435489	117	3.1	117	84	2	437	21	17	26	34	1.95
52435244--52435373	33	3.9	33	73	4	91	22	17	25	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52435131--52435489	114	3.1	117	85	1	454	21	17	27	33	1.96
52435380--52435543	33	5.0	33	78	7	154	23	17	25	32	1.97
52435299--52435465	81	2.1	81	81	0	190	22	15	27	34	1.94
52435343--52435546	99	2.1	99	79	9	211	22	17	27	33	1.96
52435395--52435448	18	3.2	18	66	15	51	24	16	25	33	1.96
52435383--52435577	99	2.0	99	84	4	250	24	16	24	34	1.95
52435679--52435759	33	2.5	33	85	0	99	20	18	27	33	1.96
52440884--52441137	33	7.7	32	72	7	168	20	15	26	37	1.93
52440884--52441137	66	3.8	66	80	2	222	20	15	26	37	1.93
52440878--52441134	99	2.6	99	78	2	264	20	15	26	36	1.93
52441072--52441185	51	2.2	51	85	0	147	20	21	25	33	1.97
52441049--52441212	84	2.0	84	82	0	202	21	18	25	34	1.96
52441006--52441368	117	3.1	117	84	2	428	21	17	27	34	1.95
52441165--52441252	33	2.7	33	80	3	88	25	14	25	35	1.94
52441259--52441422	33	5.0	33	78	5	152	21	17	27	32	1.96
52441142--52441376	114	2.1	114	92	0	389	21	17	28	32	1.96
52441178--52441344	81	2.1	81	80	0	181	22	14	28	34	1.94
52441262--52441422	66	2.4	66	77	4	173	22	17	26	33	1.96
52441493--52441641	51	2.9	51	83	0	181	23	22	26	27	2.00
52441609--52441689	33	2.5	33	85	0	99	20	18	27	33	1.96
52446750--52446850	33	3.1	33	80	5	105	12	26	33	26	1.93
52447110--52447382	48	5.6	48	82	6	275	15	23	36	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52447094--52447271	54	3.4	54	89	4	251	16	21	34	27	1.95
52447110--52447392	93	3.0	93	82	7	313	15	22	35	25	1.94
52455428--52455474	21	2.3	20	85	3	58	48	0	0	51	1.00
52461647--52461693	22	2.1	22	100	0	94	21	10	10	57	1.62
52461975--52462011	18	2.0	19	89	5	58	2	10	18	67	1.32
52471150--52471195	24	1.9	24	86	0	65	23	2	6	67	1.25
52476133--52476158	5	5.2	5	100	0	52	23	19	19	38	1.93
52476248--52476273	5	5.2	5	100	0	52	19	19	19	42	1.90
52483666--52483734	24	2.8	24	74	10	68	42	2	1	53	1.24
52485360--52485428	16	4.3	16	90	0	111	36	5	34	23	1.79
52485671--52485705	15	2.2	17	90	10	56	51	5	0	42	1.25
52485784--52485896	54	2.1	54	85	3	147	43	7	3	45	1.50
52486409--52486492	42	2.0	42	100	0	168	30	19	23	26	1.98
52487476--52487528	27	2.1	27	82	10	67	43	0	0	56	0.99
52499544--52499616	18	4.1	18	77	5	67	57	1	0	41	1.07
52500312--52500336	6	4.2	6	100	0	50	84	0	0	16	0.63
52501580--52501622	21	2.2	19	84	16	52	34	4	9	51	1.55
52501601--52502012	17	23.3	17	69	17	114	44	9	11	33	1.74
52501600--52501703	18	5.8	18	74	17	74	46	10	12	30	1.76
52501785--52502046	17	14.5	17	72	11	148	44	10	12	31	1.77
52501809--52501874	21	3.0	22	86	8	91	40	7	7	43	1.61
52501991--52502046	18	3.1	19	76	7	62	41	14	10	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52502041--52502091	18	2.9	17	77	8	57	47	7	9	35	1.66
52502584--52502648	8	8.4	8	88	8	82	0	18	0	81	0.69
52502586--52502661	15	5.1	15	87	3	100	0	18	0	81	0.69
52502595--52502661	7	9.1	7	84	12	82	0	17	0	82	0.68
52502948--52502993	3	15.0	3	82	13	58	0	36	0	63	0.95
52502962--52502990	10	2.9	10	100	0	58	0	37	0	62	0.96
52502948--52502993	13	3.7	13	81	18	62	0	36	0	63	0.95
52503049--52503098	10	5.2	10	80	7	59	0	30	0	70	0.88
52503053--52503095	19	2.3	19	88	11	63	0	30	0	69	0.88
52503342--52503458	30	3.9	29	77	11	94	44	3	21	30	1.69
52503357--52503458	30	3.4	30	83	2	125	44	3	21	30	1.70
52503456--52503491	16	2.2	17	90	5	56	19	0	2	77	0.88
52503456--52503491	17	2.1	17	89	0	54	19	0	2	77	0.88
52503733--52503878	55	2.7	54	91	5	233	34	19	15	31	1.92
52503890--52503921	13	2.5	13	100	0	64	68	9	9	12	1.39
52503913--52505372	72	20.2	72	92	2	2306	33	18	17	31	1.94
52503913--52505372	145	10.1	144	93	2	2306	33	18	17	31	1.94
52503913--52505372	217	6.7	216	93	2	2308	33	18	17	31	1.94
52526669--52527081	17	23.3	17	69	17	130	44	9	11	33	1.74
52526668--52527106	18	24.6	18	69	18	120	44	10	11	33	1.75
52526841--52527115	17	15.4	17	73	9	156	45	10	12	31	1.75
52526861--52526942	22	4.1	20	83	13	89	43	8	7	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52526861--52526942	21	4.1	20	83	11	98	43	8	7	40	1.63
52527060--52527115	18	3.1	19	76	7	62	41	14	10	33	1.80
52527110--52527160	18	2.9	17	77	8	57	47	7	9	35	1.66
52527663--52527710	7	6.9	7	90	7	71	0	16	0	83	0.65
52527652--52527714	6	10.5	6	77	16	60	0	19	0	80	0.70
52527664--52527701	20	1.9	20	100	0	76	0	15	0	84	0.63
52527652--52527727	20	4.1	19	75	14	70	0	19	0	80	0.72
52527653--52527727	14	5.5	13	73	17	55	0	18	0	81	0.69
52528015--52528060	3	15.0	3	82	13	58	0	36	0	63	0.95
52528029--52528057	10	2.9	10	100	0	58	0	37	0	62	0.96
52528015--52528060	13	3.7	13	81	18	62	0	36	0	63	0.95
52528116--52528165	10	5.2	10	80	7	59	0	30	0	70	0.88
52528120--52528162	19	2.3	19	88	11	63	0	30	0	69	0.88
52528410--52528526	30	3.9	29	77	11	94	44	3	21	30	1.69
52528425--52528526	30	3.4	30	83	2	125	44	3	21	30	1.70
52528524--52528560	17	2.1	18	90	5	58	18	0	2	78	0.87
52528524--52528560	18	2.1	18	89	0	56	18	0	2	78	0.87
52532052--52532101	26	1.9	26	100	0	100	16	24	32	28	1.96
52532080--52532390	33	8.7	33	69	22	175	20	20	26	31	1.98
52532076--52532251	75	2.3	75	90	4	275	21	20	26	31	1.98
52532226--52532278	27	2.0	27	96	0	97	16	24	30	28	1.97
52532153--52532354	102	2.0	103	96	1	370	19	20	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52539508--52539533	5	5.2	5	100	0	52	42	19	19	19	1.90
52540285--52540344	30	2.0	30	83	3	75	41	0	38	20	1.52
52540558--52540603	9	5.1	9	94	0	83	30	10	13	45	1.77
52542685--52542745	29	2.1	29	84	3	77	47	14	9	27	1.76
52548186--52548238	22	2.4	21	78	6	61	20	0	32	47	1.51
52548186--52548318	14	9.3	14	73	16	85	21	0	31	47	1.51
52548186--52548318	7	18.6	7	69	14	67	21	0	31	47	1.51
52548211--52548324	29	4.0	29	73	12	78	22	0	31	45	1.53
52551785--52552032	43	5.8	42	85	2	246	23	17	30	28	1.97
52551809--52552032	86	2.6	87	87	5	296	24	18	30	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185