Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  60  of  185  ( 22116 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17383829--17383891
4
14.5
4
81
15
72
1
26
0
71
0.95
17383829--17383901
22
3.3
22
92
1
110
1
30
0
68
0.98
17383979--17384056
27
2.9
27
92
0
129
24
26
26
21
1.99
17384704--17384822
59
2.0
59
100
0
238
39
16
11
31
1.85
17389179--17389248
34
2.1
34
88
0
104
35
12
15
35
1.86
17391431--17391472
21
2.0
21
85
0
57
28
26
19
26
1.98
17397754--17397792
19
2.1
19
85
9
53
51
2
0
46
1.14
17402352--17402394
19
2.3
19
95
0
77
20
13
55
9
1.66
17407414--17407665
34
7.4
34
68
16
128
32
13
20
32
1.92
17407412--17408077
68
9.8
68
71
9
302
33
12
22
31
1.91
17407430--17408106
136
5.0
134
78
7
567
33
11
22
32
1.90
17407418--17408004
204
2.9
204
79
2
588
33
12
21
32
1.91
17410337--17410416
28
2.9
28
80
8
94
52
3
0
43
1.19
17410373--17410411
21
1.9
20
89
5
60
51
0
0
48
1.00
17411830--17411873
16
2.7
17
77
22
58
27
22
11
38
1.88
17424262--17424324
15
4.2
14
69
15
54
31
14
3
50
1.58
17424276--17424354
35
2.3
35
93
0
131
37
13
3
44
1.63
17425956--17426016
7
9.0
7
89
7
99
68
0
16
14
1.21
17425956--17426016
13
4.5
14
87
8
99
68
0
16
14
1.21
17425956--17426013
20
2.9
20
97
0
107
70
0
15
13
1.17
17425956--17426016
27
2.3
27
91
5
97
68
0
16
14
1.21
17427616--17427747
43
3.1
43
63
12
108
30
25
21
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17427208--17428052
347
2.4
347
92
0
1404
30
23
22
23
1.99
17427208--17428052
87
9.7
87
92
0
1368
30
23
22
23
1.99
17428877--17428919
11
3.9
11
82
8
52
79
4
11
4
1.04
17430153--17430214
28
2.2
27
80
11
72
35
3
0
61
1.12
17440974--17441062
23
4.0
22
73
17
78
17
7
22
51
1.71
17440861--17441090
107
2.1
107
97
0
433
25
6
23
44
1.76
17442616--17442767
47
3.3
47
70
15
154
44
3
3
48
1.37
17442602--17442881
91
3.2
89
88
7
393
46
3
3
46
1.36
17442679--17442807
47
2.9
43
68
16
109
45
3
3
46
1.39
17442724--17442881
78
2.0
78
92
0
262
46
3
2
48
1.31
17443019--17443053
18
2.0
17
88
5
52
45
0
0
54
0.99
17443287--17443319
16
2.1
16
100
0
66
21
36
6
36
1.78
17465016--17465044
11
2.7
11
94
5
51
17
10
10
62
1.54
17465246--17465298
27
2.0
25
85
10
70
33
3
13
49
1.60
17469074--17469130
26
2.2
26
100
0
114
29
22
21
26
1.99
17487537--17487726
50
3.7
50
78
7
175
25
26
20
27
1.99
17491823--17492288
233
2.0
233
96
0
851
42
7
14
35
1.75
17493667--17493691
11
2.3
11
100
0
50
32
0
20
48
1.50
17500361--17500404
17
2.5
18
81
3
54
56
2
0
40
1.11
17503007--17503055
26
1.9
25
91
4
80
36
22
12
28
1.90
17511092--17511121
15
1.9
16
93
6
53
63
0
0
36
0.95
17512184--17512242
3
19.7
3
100
0
118
66
0
33
0
0.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17512857--17512911
27
2.0
27
92
0
92
30
12
20
36
1.90
17516363--17516438
40
1.9
40
97
0
143
31
10
22
35
1.88
17524836--17524879
17
2.6
17
81
0
61
27
13
31
27
1.94
17524876--17524913
17
2.2
17
90
0
58
44
13
15
26
1.83
17526664--17526701
18
2.1
18
95
0
67
60
0
18
21
1.36
17526664--17526718
24
2.2
24
78
9
58
61
0
18
20
1.34
17526864--17526925
26
2.4
26
83
0
70
41
9
12
35
1.76
17527230--17527287
20
2.8
20
80
17
57
53
3
1
41
1.28
17527269--17527411
11
14.4
11
73
22
97
59
0
2
38
1.09
17527298--17527411
40
2.5
50
82
16
135
60
0
1
37
1.07
17527267--17527429
38
4.2
40
90
7
255
61
0
1
36
1.07
17530541--17530606
20
3.3
20
75
8
62
15
30
18
36
1.91
17533815--17533860
22
2.1
22
84
8
58
21
6
23
47
1.74
17541748--17541797
19
2.5
21
78
18
61
60
0
0
40
0.97
17541759--17541804
19
2.5
18
89
3
65
58
2
0
39
1.10
17541764--17541804
19
2.2
19
91
4
66
65
2
0
31
1.05
17542201--17542230
8
3.6
8
95
4
51
13
10
0
76
1.01
17542193--17542237
16
2.6
17
79
6
56
17
6
4
71
1.25
17545143--17545177
12
2.8
12
91
4
52
31
8
0
60
1.27
17565577--17565633
21
2.7
21
83
5
80
64
0
0
35
0.93
17566036--17566066
8
3.8
8
95
4
53
16
9
0
74
1.07
17566029--17566074
16
2.7
17
80
6
58
19
6
4
69
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17567563--17567630
27
2.7
26
80
19
81
42
39
5
11
1.66
17568709--17568743
12
2.8
12
91
4
52
31
8
0
60
1.27
17580138--17580200
1
63.0
1
80
0
72
90
9
0
0
0.45
17580138--17580200
18
3.3
19
86
13
85
90
9
0
0
0.45
17580140--17580201
14
4.0
16
85
14
94
88
11
0
0
0.51
17580138--17580200
29
2.2
29
94
0
108
90
9
0
0
0.45
17581530--17581957
44
9.8
44
69
12
213
29
20
21
28
1.98
17581517--17582002
175
2.8
175
93
0
819
30
19
22
28
1.98
17583653--17583687
12
2.8
12
91
4
52
31
8
0
60
1.27
17587977--17588608
132
4.8
132
92
0
1012
27
23
17
31
1.97
17588592--17588626
18
1.9
18
94
0
61
25
11
37
25
1.90
17588700--17589423
50
14.7
50
74
10
272
26
20
20
32
1.97
17588677--17589327
100
6.6
99
85
5
532
26
19
20
33
1.97
17588948--17589327
150
2.5
150
91
0
600
28
18
19
33
1.96
17588902--17589431
100
5.3
100
86
4
510
26
20
20
32
1.97
17588753--17589372
150
4.2
147
80
5
585
27
19
20
33
1.97
17590464--17590569
53
2.0
53
96
0
194
20
18
26
33
1.96
17591971--17592012
6
7.0
6
89
8
59
4
14
0
80
0.86
17591998--17592059
23
2.7
23
85
2
63
14
3
9
72
1.23
17592007--17592055
14
3.4
14
78
21
57
16
2
10
71
1.22
17600776--17600864
46
1.9
46
90
0
142
23
26
30
19
1.98
17612887--17612962
35
2.3
33
82
14
88
55
5
1
38
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17617327--17617411
37
2.3
37
89
0
134
27
18
21
32
1.97
17617344--17617428
37
2.3
37
87
4
118
21
21
22
35
1.96
17617544--17617629
42
2.0
42
86
4
120
29
15
15
40
1.87
17617616--17617640
11
2.3
11
100
0
50
24
12
16
48
1.79
17622032--17622056
8
3.1
8
100
0
50
36
24
0
40
1.55
17622076--17622126
22
2.5
20
84
9
66
31
23
3
41
1.73
17622078--17622120
22
2.0
21
90
4
68
25
25
4
44
1.73
17622644--17622674
12
2.6
12
100
0
62
32
41
0
25
1.56
17623364--17623409
5
9.4
5
95
4
85
58
0
0
41
0.98
17623392--17623471
38
2.1
37
84
6
99
43
2
1
52
1.22
17624624--17624703
40
2.0
40
85
0
106
26
17
23
32
1.97
17625072--17625112
18
2.3
17
84
12
55
58
4
0
36
1.20
17625071--17625111
19
2.2
18
86
4
55
60
4
0
34
1.18
17625132--17625189
11
5.5
10
82
11
62
65
5
1
27
1.23
17627177--17627323
41
3.6
40
89
0
204
34
19
22
23
1.97
17627298--17627349
26
2.0
25
92
3
86
19
19
34
26
1.95
17632713--17632758
22
2.1
22
84
8
58
56
17
10
15
1.67
17644047--17644168
37
3.3
36
78
5
118
29
18
18
32
1.95
17644078--17644182
37
2.8
36
75
11
104
29
19
18
33
1.95
17645683--17645774
36
2.6
35
84
8
123
26
20
20
32
1.97
17645952--17645998
24
2.0
24
83
8
60
55
6
19
19
1.64
17647657--17647708
14
3.7
14
71
0
50
28
21
15
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17647652--17647720
28
2.5
28
76
9
77
27
20
15
36
1.93
17647726--17647775
26
1.9
26
83
0
64
26
20
14
40
1.90
17651877--17652106
121
1.9
121
99
0
451
25
22
12
40
1.88
17653444--17653668
113
2.0
113
87
1
326
34
22
12
30
1.91
17654658--17654699
12
3.5
12
86
0
66
2
33
26
38
1.69
17656442--17656483
18
2.3
18
88
8
59
30
21
23
23
1.99
17656487--17656557
35
2.0
35
83
0
88
35
28
16
19
1.94
17661002--17661052
17
2.9
17
88
2
66
33
27
23
15
1.95
17666573--17666619
21
2.3
21
85
10
62
74
6
0
19
1.03
17667766--17667834
35
1.9
35
85
8
95
55
4
2
37
1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185