genome.fa.s17.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  61  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17672274--17672318	22	2.1	22	87	4	65	22	31	0	46	1.52
17674752--17675037	43	6.7	42	78	4	279	27	30	17	25	1.97
17674752--17675057	129	2.4	127	82	2	351	27	31	16	24	1.97
17679208--17679253	7	6.6	7	92	0	65	32	50	0	17	1.47
17679208--17679269	21	2.9	21	82	2	61	33	46	0	19	1.50
17679763--17679801	20	2.0	20	89	0	60	69	5	2	23	1.21
17679815--17680039	41	5.5	42	91	3	336	28	26	21	23	1.99
17683018--17683118	42	2.4	42	86	3	132	28	23	23	23	1.99
17688118--17688213	31	3.1	31	95	3	174	44	13	9	32	1.76
17693838--17694081	69	3.6	69	83	4	305	38	20	19	21	1.94
17697419--17697471	22	2.4	22	84	9	63	45	9	22	22	1.81
17699493--17699575	20	4.2	20	73	14	82	37	15	31	15	1.89
17699545--17699586	20	2.1	20	86	0	57	42	16	26	14	1.86
17699490--17699616	59	2.2	59	79	2	139	40	18	27	14	1.89
17702324--17702695	127	2.9	128	95	2	685	33	7	14	44	1.73
17711025--17711055	15	2.1	15	93	0	53	35	6	22	35	1.80
17712319--17712404	10	8.8	10	73	19	74	56	2	2	38	1.25
17712319--17712349	11	2.9	11	95	4	55	61	0	0	38	0.96
17712319--17712395	9	8.0	9	77	13	66	57	1	2	38	1.21
17712834--17712873	19	2.1	19	85	0	53	40	0	0	60	0.97
17713062--17713107	22	2.1	22	84	15	60	36	0	4	58	1.18
17717223--17717265	18	2.4	18	88	0	59	23	25	9	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17720964--17721072	34	3.3	33	86	6	157	45	14	0	39	1.45
17721117--17721197	42	2.0	41	90	7	128	46	24	3	24	1.68
17723923--17723984	30	2.1	30	87	0	88	30	22	16	30	1.96
17726429--17726461	6	5.7	6	92	7	59	54	0	27	18	1.44
17726429--17726461	11	2.8	12	95	4	59	54	0	27	18	1.44
17734411--17734452	9	4.3	10	85	11	52	2	19	0	78	0.86
17734411--17734454	15	2.9	15	83	16	56	2	18	0	79	0.83
17734409--17734460	26	2.0	26	85	7	70	3	17	0	78	0.89
17738839--17739135	37	7.9	37	80	7	253	36	16	20	26	1.94
17738839--17739137	73	4.0	74	79	9	273	36	16	20	26	1.94
17739146--17739568	35	11.7	35	75	7	303	37	14	23	24	1.92
17739052--17739239	102	1.8	102	82	4	245	39	13	21	25	1.90
17739151--17739488	73	4.6	73	76	7	312	39	14	22	24	1.91
17739140--17739486	146	2.4	146	80	6	350	39	14	21	24	1.90
17739722--17739793	36	2.0	36	86	0	99	40	11	23	25	1.87
17740738--17740771	15	2.3	15	90	5	52	11	2	11	73	1.20
17743117--17743360	29	8.4	29	79	7	244	35	11	27	25	1.91
17743117--17743389	58	4.7	57	81	6	307	35	11	27	25	1.91
17743117--17743389	87	3.1	87	79	3	316	35	11	27	25	1.91
17748377--17748475	12	8.6	12	71	19	61	55	3	2	39	1.27
17748379--17748431	20	2.8	19	81	18	67	54	1	1	41	1.22
17748346--17748473	17	7.5	17	68	17	59	53	2	3	40	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17755842--17755945	52	2.0	52	90	0	163	44	12	14	28	1.82
17763499--17763529	15	2.1	15	100	0	62	51	6	25	16	1.68
17764990--17765036	23	2.0	23	84	8	60	44	0	14	40	1.46
17786892--17787067	27	6.5	27	84	3	201	26	15	27	30	1.96
17786892--17787046	82	1.9	81	88	4	231	27	15	27	29	1.96
17786887--17787067	82	2.2	81	82	2	220	27	15	27	29	1.96
17789630--17789796	27	6.2	27	85	6	214	40	17	19	23	1.91
17789630--17789803	81	2.1	81	86	2	251	41	17	18	22	1.90
17789651--17789825	54	3.2	53	82	4	199	41	18	19	20	1.91
17789651--17789828	81	2.2	81	84	4	234	40	19	19	20	1.92
17790182--17790268	28	3.0	28	81	6	102	25	24	21	28	1.99
17790205--17790267	30	2.1	30	90	0	99	26	26	20	25	1.99
17790205--17790298	30	3.0	30	83	9	91	27	25	22	24	2.00
17790550--17790618	32	2.2	32	94	0	120	39	4	20	36	1.72
17797016--17797256	81	3.0	79	85	3	295	41	20	19	19	1.91
17796981--17797257	27	10.3	27	81	8	262	41	19	18	20	1.90
17797952--17798015	32	2.0	32	100	0	128	37	6	21	34	1.79
17802719--17802783	22	3.0	21	72	4	58	43	16	21	18	1.88
17802775--17802852	32	2.5	32	87	2	104	38	21	20	19	1.94
17802852--17802905	26	2.1	26	82	0	63	37	22	20	20	1.95
17803026--17803081	24	2.3	24	87	6	87	53	21	7	17	1.67
17803260--17803523	27	9.8	28	79	9	214	26	12	18	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17803260--17803483	54	4.2	53	80	5	243	26	12	18	43	1.85
17803260--17803523	54	4.9	54	78	4	239	26	12	18	42	1.86
17803260--17803510	81	3.1	81	77	7	278	26	13	17	43	1.86
17803408--17803523	53	2.2	54	85	1	153	23	13	19	43	1.87
17810075--17810182	44	2.5	45	81	15	131	27	27	19	25	1.99
17815806--17815844	12	3.2	12	85	0	51	20	23	5	51	1.67
17816093--17816335	50	4.7	50	83	4	254	21	27	21	28	1.99
17820810--17820926	44	2.7	44	79	11	134	28	29	18	23	1.98
17821739--17821768	6	5.2	6	92	8	53	0	16	0	83	0.65
17825543--17825621	29	2.8	29	82	5	81	17	25	17	39	1.92
17826232--17826467	42	5.6	42	80	5	199	27	25	20	27	1.99
17826282--17826516	44	5.5	42	77	8	188	25	25	19	29	1.98
17826901--17826947	21	2.2	21	88	0	67	8	44	10	36	1.70
17829946--17830359	9	48.4	9	67	18	190	35	1	18	43	1.61
17829951--17830204	25	10.4	25	70	20	123	35	1	17	45	1.58
17829959--17830324	16	22.0	16	67	16	151	35	1	18	45	1.59
17829974--17830144	92	1.8	93	87	7	258	35	1	18	44	1.60
17830168--17830245	41	1.9	41	91	0	129	39	3	14	42	1.63
17830041--17830357	25	12.6	25	77	7	216	35	2	18	43	1.62
17831152--17831224	21	3.3	21	68	29	62	60	6	4	28	1.41
17831619--17831686	19	3.8	18	86	9	95	45	19	4	30	1.70
17833682--17833968	137	2.1	137	100	0	574	41	31	8	19	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833952--17834005	7	7.6	7	79	4	54	46	44	0	9	1.35
17833951--17834014	21	3.0	21	81	4	74	45	42	0	12	1.42
17833949--17834013	7	9.1	7	75	9	51	44	44	0	10	1.39
17833957--17834012	29	1.9	29	81	0	67	46	42	0	10	1.38
17834430--17834698	113	2.4	111	79	9	249	33	17	19	28	1.95
17838034--17838093	20	2.8	21	73	12	52	40	21	11	26	1.88
17838584--17838641	25	2.3	25	93	0	98	24	24	1	50	1.59
17839754--17839789	9	4.0	9	86	13	56	0	25	0	75	0.81
17842578--17842675	46	2.1	46	84	3	126	34	10	26	28	1.89
17853187--17853231	23	2.0	23	86	0	63	28	24	17	28	1.97
17859382--17859424	22	2.0	22	86	9	61	23	20	30	25	1.99
17862359--17862389	14	2.2	14	100	0	62	29	6	38	25	1.81
17862938--17863016	40	1.9	41	84	5	106	46	17	7	27	1.75
17867277--17867309	15	2.1	16	88	5	50	0	27	6	66	1.15
17890965--17891017	20	2.8	18	81	13	63	50	1	1	45	1.23
17891444--17891483	10	4.2	9	84	9	53	40	0	2	57	1.12
17891444--17891480	19	1.9	19	89	10	58	37	0	2	59	1.12
17892282--17892315	11	3.0	11	86	4	50	52	8	2	35	1.47
17900850--17900927	42	1.9	42	82	10	99	48	1	3	46	1.28
17900902--17900930	5	6.0	5	92	8	51	41	0	0	58	0.98
17905199--17905279	31	2.6	31	78	0	99	23	33	23	19	1.97
17905381--17905554	35	5.0	35	80	2	136	44	16	13	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17908262--17908385	66	1.9	66	81	6	153	33	19	22	24	1.97
17909356--17909403	17	2.9	17	81	3	62	47	10	18	22	1.79
17909858--17909899	21	2.0	21	90	0	66	21	38	4	35	1.75
17909867--17909901	18	1.9	18	88	0	52	22	37	5	34	1.78
17915266--17915305	18	2.2	18	95	0	71	30	25	17	27	1.97
17917591--17917637	19	2.5	19	92	0	76	68	4	10	17	1.35
17921574--17921693	35	3.3	36	81	8	138	26	16	14	42	1.86
17921604--17921701	36	2.8	35	80	7	110	25	16	15	42	1.87
17923967--17924046	22	3.6	22	81	0	97	17	27	22	32	1.96
17925193--17925256	23	2.8	23	90	0	101	15	29	25	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185