genome.fa.s17.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  142  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43941691--43941780	32	2.8	32	77	17	96	68	8	2	20	1.27
43941759--43941790	13	2.4	14	94	5	57	84	3	0	12	0.74
43942289--43942391	44	2.3	46	77	13	106	33	31	0	35	1.58
43949791--43949846	7	8.0	7	82	7	69	39	0	28	32	1.57
43964808--43964877	25	2.8	24	83	14	81	32	15	24	27	1.95
43964829--43964877	25	2.0	25	95	0	89	34	16	24	24	1.95
43967049--43967075	11	2.5	11	100	0	54	40	14	14	29	1.86
43967952--43968549	313	1.9	308	86	2	822	38	15	18	27	1.91
43969051--43969076	12	2.2	12	100	0	52	26	7	38	26	1.83
43971347--43971386	21	1.9	21	84	0	53	35	12	22	30	1.91
43979154--43979179	13	2.0	13	100	0	52	30	0	7	61	1.24
43979387--43979426	20	2.1	18	86	13	53	25	10	2	62	1.39
43979472--43979782	110	2.9	109	86	2	421	29	16	19	34	1.94
43983826--43983881	24	2.4	23	88	8	78	71	8	8	10	1.31
43984748--43984773	13	2.0	13	100	0	52	69	0	15	15	1.20
43985957--43986615	87	7.6	87	89	1	973	30	22	22	24	1.99
43986661--43986921	44	5.7	44	72	13	206	32	19	20	27	1.97
43986594--43986948	142	2.5	142	94	0	620	32	18	21	26	1.97
43988894--43988919	13	2.0	13	100	0	52	30	0	7	61	1.24
43989112--43989151	20	2.1	18	86	13	53	25	10	2	62	1.39
43989197--43989507	110	2.9	109	88	2	430	29	15	19	34	1.93
44006586--44006635	11	4.5	11	92	0	82	32	8	0	60	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44009061--44009134	3	24.7	3	100	0	148	66	0	0	33	0.92
44013590--44013632	20	2.2	20	82	0	50	60	0	0	39	0.97
44015850--44015890	22	2.0	20	85	9	55	41	4	19	34	1.73
44017185--44017368	43	4.1	43	79	10	208	21	30	21	26	1.98
44017781--44017883	43	2.4	43	95	0	179	29	27	16	27	1.97
44017900--44017933	16	2.1	16	88	0	50	55	8	0	35	1.31
44018869--44019242	192	2.0	191	82	4	459	42	19	9	28	1.82
44019747--44019782	18	2.0	18	100	0	72	44	22	16	16	1.86
44021361--44021400	20	2.0	20	100	0	80	35	10	25	30	1.88
44025862--44025901	20	2.0	20	95	0	71	35	7	25	32	1.84
44025870--44025914	20	2.2	20	84	7	56	33	11	26	28	1.91
44031152--44031190	9	4.3	9	83	0	51	28	2	15	53	1.55
44031152--44031190	18	2.2	18	95	0	69	28	2	15	53	1.55
44032652--44032698	19	2.5	19	86	6	60	8	14	6	70	1.32
44033447--44033485	3	13.0	3	88	0	60	30	2	2	64	1.21
44034000--44034548	110	5.0	111	91	1	843	31	14	18	34	1.92
44033999--44034548	221	2.5	220	90	1	868	31	14	18	34	1.92
44037894--44037961	6	11.7	6	78	9	52	72	8	5	13	1.28
44037933--44038033	51	2.0	52	82	9	127	74	5	10	8	1.22
44037900--44038019	40	3.0	40	79	7	136	72	6	10	10	1.28
44038937--44038974	10	3.7	10	93	6	67	89	10	0	0	0.49
44038937--44038974	11	3.5	11	89	3	60	89	10	0	0	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44038937--44038974	13	3.1	12	85	14	51	89	10	0	0	0.49
44040287--44040468	100	1.8	100	85	4	260	35	23	19	21	1.96
44040456--44040505	25	2.0	25	84	0	64	36	20	18	26	1.95
44040573--44041329	44	17.7	42	71	10	455	30	22	21	25	1.98
44040568--44041379	129	6.3	129	92	1	1263	31	21	20	25	1.98
44042377--44042423	19	2.5	19	86	6	60	8	14	6	70	1.32
44043173--44043222	3	16.7	3	82	0	64	36	2	2	60	1.20
44043237--44043304	24	2.8	25	76	14	70	35	11	1	51	1.48
44043349--44043426	39	2.0	39	82	0	93	34	8	5	51	1.56
44043722--44044270	110	5.0	111	92	1	888	30	15	19	34	1.93
44043722--44044270	221	2.5	221	93	1	931	30	15	19	34	1.93
44046115--44046165	15	3.6	14	82	12	52	72	1	3	21	1.11
44046140--44046169	12	2.5	12	100	0	60	63	0	0	36	0.95
44048262--44048321	29	2.1	29	100	0	120	46	3	10	40	1.54
44053274--44053307	18	1.9	18	88	5	52	76	0	14	8	1.01
44055299--44055340	17	2.5	17	88	0	57	42	38	16	2	1.61
44056676--44056735	22	2.8	21	79	18	61	28	6	5	60	1.43
44056963--44057157	97	2.0	97	93	2	338	29	9	23	37	1.87
44060228--44060265	20	2.0	20	85	15	53	39	2	13	44	1.57
44069486--44070471	44	22.7	43	68	15	399	29	21	23	26	1.99
44069486--44070459	217	4.5	218	90	1	1515	29	21	22	26	1.99
44069486--44070459	435	2.2	435	95	0	1711	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44070728--44070769	17	2.5	17	88	0	57	42	38	16	2	1.61
44072116--44072176	22	2.8	21	79	16	61	27	8	4	59	1.47
44072407--44072603	98	2.0	98	93	0	340	29	9	22	37	1.86
44078603--44078661	24	2.5	24	91	5	93	42	6	1	49	1.39
44082078--44082104	14	1.9	14	100	0	54	14	22	14	48	1.81
44084823--44084963	64	2.2	64	97	0	264	37	16	10	35	1.83
44093036--44093078	18	2.6	16	82	13	59	48	0	2	48	1.14
44093041--44093083	18	2.4	18	96	0	77	51	0	2	46	1.13
44108037--44108149	56	2.0	56	100	0	226	19	15	28	36	1.93
44109862--44110175	162	1.9	162	96	0	583	25	21	17	35	1.95
44115716--44115785	16	4.4	16	96	0	113	30	0	35	34	1.58
44115767--44115873	44	2.6	40	72	18	110	37	5	26	30	1.79
44116019--44116053	18	2.0	17	88	5	52	54	0	0	45	0.99
44115906--44116222	157	2.0	157	96	0	589	43	3	5	47	1.42
44116404--44116554	75	2.0	75	100	0	302	35	15	13	35	1.87
44118158--44118273	15	7.5	15	64	24	53	62	12	16	7	1.52
44118138--44118273	33	4.3	33	80	12	176	61	13	17	8	1.56
44119137--44119212	37	2.0	38	82	12	93	50	1	2	46	1.24
44119300--44119352	10	5.0	10	73	13	52	33	9	1	54	1.43
44121201--44121242	9	4.7	9	81	0	57	50	14	7	28	1.69
44121243--44121330	45	2.0	45	95	0	158	44	25	3	27	1.70
44130404--44130482	30	2.7	29	79	9	88	60	2	2	34	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44130448--44130488	18	2.3	18	86	0	55	65	2	2	29	1.18
44131850--44132212	178	2.0	178	95	0	656	34	16	13	34	1.88
44144268--44144302	13	2.7	13	90	0	52	34	2	0	62	1.10
44144411--44144491	35	2.4	33	79	6	83	29	13	6	50	1.66
44156979--44157256	45	6.2	45	86	5	366	30	16	25	27	1.97
44158754--44158797	3	14.0	3	86	9	61	34	2	0	63	1.07
44158754--44158797	22	2.0	22	90	0	70	34	2	0	63	1.07
44158755--44158805	22	2.3	22	86	0	66	31	1	1	64	1.15
44158754--44158797	10	4.7	9	88	8	61	34	2	0	63	1.07
44160255--44160284	6	5.0	6	95	0	51	63	0	20	16	1.31
44164106--44164139	7	4.9	7	96	0	59	17	0	0	82	0.67
44175182--44175219	16	2.3	16	82	17	51	60	15	13	10	1.59
44175380--44175455	31	2.5	31	91	0	125	42	18	13	26	1.87
44195097--44195415	44	7.2	44	88	2	444	30	20	23	25	1.99
44196023--44196069	17	2.6	19	73	13	53	6	44	25	23	1.77
44199453--44199565	41	2.8	41	86	5	160	28	15	19	37	1.92
44203501--44203607	41	2.7	41	85	2	137	28	17	19	34	1.95
44206244--44206322	4	20.0	4	69	19	51	6	22	1	69	1.18
44207964--44208381	42	9.9	42	83	1	206	27	19	21	31	1.97
44208011--44208396	84	4.5	85	82	3	377	26	20	21	31	1.98
44207969--44208383	126	3.3	127	80	5	410	26	20	21	31	1.97
44210536--44210622	44	2.0	44	90	0	138	34	9	31	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44211424--44211468	23	2.0	23	82	4	56	42	6	2	48	1.41
44211796--44211852	7	8.0	7	74	3	51	43	40	0	15	1.47
44212712--44212819	55	2.0	55	83	0	135	25	17	17	39	1.91
44213990--44214127	40	3.5	39	72	11	111	34	20	17	27	1.95
44214019--44214130	38	2.8	41	79	6	140	35	20	18	25	1.95
44214960--44215038	4	19.8	4	73	21	60	2	21	2	73	1.07
44214960--44215030	30	2.4	29	81	6	79	1	22	2	73	1.05
44217220--44217260	22	1.9	22	85	5	57	24	34	17	24	1.96
44220172--44220324	47	3.3	47	90	0	243	49	20	10	20	1.78
44221883--44221907	13	1.9	13	100	0	50	56	4	0	40	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185