genome.fa.s17.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  117  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36686891--36687001	33	3.4	33	89	0	159	43	33	6	17	1.74
36689143--36689174	13	2.5	13	94	0	55	21	21	43	12	1.86
36692958--36693121	90	1.8	90	86	0	238	26	12	23	37	1.91
36692962--36693123	45	3.6	45	79	6	175	25	14	24	36	1.93
36702417--36702511	43	2.2	43	92	0	154	25	31	27	15	1.96
36713952--36713994	22	2.0	22	100	0	86	30	13	27	27	1.95
36723086--36723256	85	2.0	85	96	0	315	35	23	14	26	1.94
36728524--36728714	50	3.7	50	79	6	177	23	28	20	27	1.99
36729052--36729109	30	1.9	30	85	0	80	31	25	5	37	1.78
36729989--36730042	26	2.1	26	100	0	108	35	14	20	29	1.93
36734410--36734611	27	7.5	27	75	12	182	31	23	15	29	1.95
36734417--36734611	54	3.6	54	80	10	204	32	23	14	29	1.94
36742363--36742399	5	7.6	5	87	6	58	75	2	0	21	0.92
36742363--36742399	15	2.6	14	91	8	65	75	2	0	21	0.92
36747988--36748035	24	2.0	24	84	4	62	64	8	4	22	1.38
36758283--36758323	21	2.0	21	85	0	55	31	9	9	48	1.69
36759059--36759384	163	2.0	164	88	1	485	44	16	12	26	1.84
36759989--36760014	12	2.2	12	100	0	52	7	30	38	23	1.83
36759905--36760028	54	2.3	54	81	2	169	18	29	28	23	1.98
36770925--36770955	16	1.9	16	100	0	62	58	9	6	25	1.54
36771085--36771119	18	2.0	17	88	5	52	48	2	0	48	1.16
36771205--36771239	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36771084--36771499	120	3.5	120	94	2	712	43	2	5	49	1.37
36771456--36771497	15	2.7	16	82	14	52	45	0	2	52	1.13
36771447--36771488	15	2.9	15	82	10	52	47	0	0	52	1.00
36771642--36771731	44	2.0	44	83	8	112	34	25	5	34	1.79
36771718--36771756	16	2.4	16	95	0	69	20	30	2	46	1.64
36774513--36774556	20	2.2	20	88	4	63	6	25	4	63	1.38
36777413--36777456	23	2.0	22	90	4	70	56	2	6	34	1.38
36778167--36778232	22	3.1	22	93	6	111	33	18	9	39	1.82
36780275--36780326	26	2.0	27	85	11	72	38	7	19	34	1.80
36780277--36780327	13	3.9	13	72	10	50	39	7	17	35	1.79
36784783--36784822	16	2.5	16	83	0	53	32	27	5	35	1.79
36787158--36787257	50	2.0	50	100	0	200	36	20	14	30	1.91
36788078--36788126	15	3.3	15	75	16	57	63	2	8	26	1.34
36788720--36788757	19	2.0	19	94	0	67	26	7	15	50	1.72
36793337--36793370	17	1.9	18	88	5	52	44	5	17	32	1.73
36797392--36797495	49	2.1	49	94	0	181	50	10	7	31	1.65
36799499--36799738	45	5.6	45	74	21	239	31	2	12	53	1.52
36799468--36799714	19	12.1	19	71	18	160	31	2	12	54	1.48
36799583--36799637	25	2.2	25	83	0	65	36	0	7	56	1.27
36799528--36799738	83	2.5	83	90	6	363	31	1	12	54	1.49
36799792--36799883	48	1.9	48	88	4	141	50	6	4	39	1.48
36800274--36800322	10	5.4	10	72	22	54	61	16	12	10	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36800274--36800339	25	2.6	26	87	0	82	59	16	12	12	1.62
36800347--36800379	15	2.2	15	100	0	66	60	12	9	18	1.57
36801975--36802027	12	4.5	12	81	13	74	58	20	13	7	1.59
36804695--36804728	7	4.9	7	92	0	59	32	26	0	41	1.56
36804690--36804739	21	2.4	20	80	9	55	34	28	0	38	1.57
36804731--36804785	21	2.7	20	86	8	74	34	12	1	50	1.51
36804829--36804858	15	2.0	15	93	0	51	13	16	6	63	1.50
36809594--36809701	41	2.6	41	92	0	180	19	30	17	32	1.95
36809594--36809698	21	5.1	21	66	4	79	20	31	18	30	1.96
36809605--36809677	20	3.6	20	66	3	56	15	32	17	34	1.91
36813791--36813848	29	2.0	29	86	6	82	34	6	18	39	1.78
36818642--36818691	26	2.0	26	85	14	70	34	0	20	46	1.51
36820285--36820542	25	10.4	25	66	17	90	25	16	18	39	1.91
36820274--36820525	74	3.4	75	69	11	192	26	16	19	38	1.92
36820310--36820542	50	4.7	50	77	5	222	25	15	19	39	1.91
36825895--36826044	25	5.9	25	66	18	94	24	13	24	37	1.91
36825955--36826012	28	2.1	28	87	6	82	27	10	22	39	1.86
36825905--36826069	78	2.1	78	86	1	224	24	13	24	36	1.92
36831338--36831370	13	2.8	12	90	9	50	36	9	15	39	1.79
36832569--36832912	102	3.4	100	84	3	413	29	16	25	28	1.97
36832569--36832906	51	6.7	50	80	7	333	29	16	25	28	1.97
36840351--36840584	50	4.6	50	85	3	290	28	16	25	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36850624--36850654	14	2.2	14	94	0	53	29	3	22	45	1.68
36851051--36851080	4	7.5	4	100	0	60	53	0	0	46	1.00
36851206--36851250	16	2.9	16	87	9	58	48	0	8	42	1.34
36855309--36855341	13	2.4	14	90	5	50	39	0	15	45	1.46
36868779--36868851	32	2.3	32	84	9	89	12	36	23	27	1.90
36869659--36869722	20	3.1	20	73	6	65	26	12	17	43	1.84
36878829--36878860	11	2.8	11	95	4	55	15	18	0	65	1.27
36886236--36886551	137	2.3	138	88	1	483	40	10	5	43	1.63
36886617--36886649	17	1.9	17	88	11	50	54	9	0	36	1.32
36888777--36888820	19	2.3	19	92	0	70	20	38	29	11	1.87
36888777--36888826	19	2.7	18	82	14	57	22	34	32	12	1.90
36892779--36893054	137	2.0	139	89	4	425	39	9	6	44	1.62
36893660--36893713	22	2.3	24	78	15	60	35	3	5	55	1.41
36896173--36896214	18	2.3	18	80	8	50	28	0	38	33	1.58
36908230--36908262	17	1.9	17	93	0	57	54	6	0	39	1.25
36909441--36909535	50	1.9	49	82	2	118	32	21	23	23	1.98
36909702--36909816	58	2.0	56	88	6	169	33	15	29	21	1.95
36909708--36909796	27	3.2	26	68	20	63	33	16	30	19	1.94
36912803--36912890	46	1.9	46	84	6	117	39	3	12	44	1.59
36913085--36913157	21	3.5	21	64	7	58	16	16	17	49	1.80
36913095--36913262	42	4.0	42	78	8	180	14	21	16	47	1.83
36919534--36919610	40	1.9	40	86	0	109	45	9	10	35	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36919951--36920214	130	2.0	130	81	5	302	26	12	37	23	1.90
36920740--36920779	16	2.7	14	88	7	53	52	0	5	42	1.23
36926782--36926815	18	1.9	17	88	5	50	50	11	2	35	1.54
36930824--36930869	23	2.0	23	87	4	67	28	4	2	65	1.23
36931565--36931626	19	3.3	19	80	8	74	62	0	1	35	1.05
36934255--36934324	23	3.0	22	77	10	68	47	15	8	28	1.75
36938437--36938631	98	2.0	98	94	0	345	27	10	24	36	1.89
36945349--36945390	22	2.0	22	85	4	59	35	16	2	45	1.61
36949835--36950407	44	13.7	44	73	18	336	27	19	24	27	1.99
36949840--36950432	86	7.1	85	71	15	321	28	20	23	27	1.99
36949833--36950488	206	3.2	212	84	9	772	29	19	23	27	1.98
36961399--36961976	117	5.0	117	92	6	936	52	3	0	43	1.25
36961434--36961949	37	13.6	36	68	17	269	51	4	0	43	1.27
36961399--36961976	230	2.5	234	92	6	961	52	3	0	43	1.25
36961883--36961916	17	2.0	17	100	0	68	58	0	0	41	0.98
36961840--36961988	5	30.6	5	64	22	59	55	2	0	41	1.16
36961921--36961988	22	2.8	25	82	12	72	58	1	1	38	1.16
36963355--36963459	49	2.1	49	94	0	183	50	10	7	31	1.65
36965018--36965048	1	31.0	1	100	0	62	100	0	0	0	0.00
36965252--36965469	88	2.5	84	74	17	214	30	2	12	55	1.49
36965399--36965442	18	2.3	19	88	7	63	31	2	6	59	1.36
36965523--36965611	46	1.9	48	86	11	132	50	6	4	38	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36967538--36967588	12	4.3	12	80	14	70	58	21	11	7	1.58
36970231--36970264	7	4.9	7	92	0	59	32	26	0	41	1.56
36970226--36970275	21	2.4	20	80	9	55	34	28	0	38	1.57
36970267--36970321	21	2.7	20	86	8	74	34	12	1	50	1.51
36970365--36970394	15	2.0	15	93	0	51	13	16	6	63	1.50
36972883--36972922	21	1.9	21	89	0	62	70	2	2	25	1.13
36975138--36975245	41	2.6	41	92	0	180	19	30	17	32	1.95
36975138--36975242	21	5.1	21	66	4	79	20	31	18	30	1.96
36975149--36975221	20	3.6	20	66	3	56	15	32	17	34	1.91
36984223--36984272	26	2.0	26	85	14	70	34	0	20	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185