genome.fa.s17.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  76  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23394644--23394690	20	2.3	20	85	0	67	29	36	12	21	1.91
23397293--23397333	18	2.3	18	91	0	64	75	7	14	2	1.12
23397338--23397380	15	2.8	15	78	3	50	72	2	18	6	1.19
23397289--23397349	6	10.3	6	73	1	52	73	4	18	3	1.14
23399044--23399090	20	2.3	20	85	0	67	29	36	12	21	1.91
23403492--23403545	20	2.7	20	82	0	63	24	20	18	37	1.94
23403492--23403565	30	2.5	30	86	8	98	21	20	18	39	1.93
23403492--23403556	20	3.2	20	71	16	53	23	21	16	38	1.93
23405156--23405249	11	7.6	11	75	16	53	73	4	9	12	1.22
23405156--23405238	37	2.2	39	81	12	102	72	4	8	14	1.25
23405190--23405227	11	3.5	11	85	0	58	68	2	10	18	1.30
23406193--23406224	15	2.1	16	94	5	57	71	0	21	6	1.07
23406307--23406340	18	1.9	18	88	5	52	52	2	35	8	1.47
23407606--23407670	10	6.5	10	70	7	51	23	21	16	38	1.93
23407606--23407659	20	2.7	20	85	0	72	24	20	18	37	1.94
23407616--23407679	30	2.1	30	88	0	92	20	20	20	39	1.93
23407606--23407670	20	3.2	20	73	16	62	23	21	16	38	1.93
23421203--23421242	18	2.2	18	86	4	53	12	27	0	60	1.33
23422297--23422336	15	2.7	15	96	0	71	20	12	5	62	1.48
23422374--23422422	12	3.9	12	89	10	80	16	0	6	77	0.96
23422376--23422422	14	3.5	14	94	5	80	12	0	6	80	0.88
23422378--23422435	26	2.2	26	87	6	82	12	1	10	75	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23432476--23432522	23	2.1	23	84	7	62	51	12	4	31	1.59
23434439--23434464	13	2.0	13	100	0	52	69	0	15	15	1.20
23434465--23434520	14	4.1	14	77	13	53	73	7	10	8	1.26
23434496--23434524	14	2.1	14	100	0	58	72	6	6	13	1.26
23435247--23435280	15	2.3	15	89	0	50	35	29	32	2	1.73
23444193--23444245	23	2.4	22	76	20	56	9	18	1	69	1.25
23449330--23449393	30	2.1	30	88	0	92	39	20	20	20	1.93
23451179--23451240	32	1.9	32	87	6	90	14	27	4	53	1.61
23451238--23451293	21	2.7	21	72	5	51	8	17	1	71	1.21
23451237--23451293	14	4.1	14	75	16	57	8	17	1	71	1.19
23451257--23451337	24	3.2	25	71	15	69	8	23	1	66	1.26
23452383--23452421	11	3.5	11	79	6	51	17	10	2	69	1.28
23452340--23452405	32	2.1	31	86	8	89	6	15	3	75	1.11
23455124--23455162	15	2.6	15	95	0	69	20	12	5	61	1.50
23455199--23455245	11	4.2	11	89	5	76	23	2	8	65	1.31
23455199--23455245	23	2.1	22	92	4	76	23	2	8	65	1.31
23457378--23457437	18	3.2	18	76	9	66	6	18	3	71	1.22
23459039--23459071	12	2.8	12	100	0	66	75	6	0	18	1.00
23460070--23460099	15	1.9	16	93	6	53	66	3	23	6	1.30
23462182--23462211	16	1.9	15	93	6	51	20	3	33	43	1.68
23463095--23463149	20	2.8	20	88	0	83	25	29	16	29	1.97
23468203--23468249	20	2.3	20	85	0	67	21	12	36	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23469504--23469609	48	2.2	48	85	9	137	14	24	1	59	1.45
23469585--23469669	18	4.6	18	66	13	55	16	29	2	51	1.57
23472231--23472277	20	2.3	20	85	0	67	21	12	36	29	1.91
23473548--23473610	33	1.9	33	84	12	85	12	26	6	53	1.62
23473607--23473663	14	4.2	13	77	20	62	10	17	0	71	1.12
23473607--23473732	27	4.6	27	69	17	89	9	17	2	70	1.25
23473670--23473720	18	2.9	18	76	2	59	5	13	5	74	1.19
23473625--23473720	6	15.7	6	67	10	52	7	17	3	71	1.22
23474756--23474806	15	3.5	15	78	10	61	3	13	5	76	1.11
23474742--23474820	29	2.8	28	81	9	88	7	12	5	74	1.19
23474800--23474833	14	2.4	14	90	0	50	8	5	2	82	0.93
23474811--23474839	13	2.2	13	100	0	58	13	0	6	79	0.93
23476253--23476290	13	2.8	13	96	4	67	7	7	5	78	1.07
23484334--23484368	18	1.9	18	88	11	54	22	20	0	57	1.41
23486703--23486763	10	6.1	10	74	12	54	32	13	22	31	1.92
23486704--23486764	20	3.0	20	81	9	70	32	13	24	29	1.93
23487202--23487248	20	2.3	20	88	0	67	29	19	29	21	1.97
23494636--23494807	40	4.3	40	88	2	222	25	27	21	25	1.99
23494638--23494860	40	5.6	39	83	5	216	25	27	21	25	1.99
23494636--23494860	80	2.8	79	80	7	240	25	27	21	25	1.99
23494792--23494869	40	1.9	41	82	10	97	26	28	20	24	1.99
23497709--23497740	6	5.3	6	100	0	64	15	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23497710--23497749	18	2.2	18	86	8	55	20	0	0	80	0.72
23499989--23500085	30	3.2	30	75	2	106	28	14	27	28	1.95
23502268--23502298	12	2.6	12	100	0	62	25	16	12	45	1.83
23502359--23502408	6	8.2	6	81	16	50	2	20	2	76	0.99
23502348--23502418	37	1.9	37	86	11	101	2	18	2	76	1.04
23502344--23502404	16	3.8	16	77	14	63	3	19	1	75	1.03
23503337--23503386	10	4.6	11	83	14	52	6	10	6	78	1.10
23503349--23503386	10	3.6	11	89	6	53	5	7	5	81	0.98
23505068--23505164	30	3.2	30	75	2	106	28	14	27	28	1.95
23506336--23506360	13	1.9	13	100	0	50	36	16	32	16	1.90
23522326--23522356	12	2.6	12	100	0	62	12	0	6	80	0.89
23523348--23523394	23	2.1	23	88	7	71	51	10	4	34	1.56
23528745--23528801	11	5.0	11	84	16	80	19	0	8	71	1.11
23528744--23528786	13	3.5	13	90	9	72	13	0	6	79	0.93
23528741--23528798	23	2.5	23	91	2	98	20	0	6	72	1.07
23529791--23529837	23	2.1	23	84	7	62	51	12	4	31	1.59
23535606--23535650	24	1.9	23	86	13	65	71	2	17	8	1.23
23535668--23535708	18	2.3	19	79	12	50	65	4	21	7	1.37
23535697--23535732	18	1.9	19	88	5	56	52	0	22	25	1.47
23536690--23536756	21	3.1	21	82	4	80	29	2	32	34	1.73
23540510--23540571	13	4.5	13	76	20	63	75	4	4	14	1.13
23540510--23540599	12	6.7	12	73	17	54	74	5	7	12	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23540509--23540585	31	3.0	24	73	24	75	74	5	6	14	1.20
23540522--23540601	41	1.9	42	84	2	108	73	5	8	12	1.22
23541516--23541551	19	1.9	19	88	5	56	58	0	19	22	1.40
23541492--23541577	31	2.7	32	78	10	97	65	0	20	13	1.27
23547118--23547171	16	3.2	16	77	12	54	9	12	3	74	1.20
23549402--23549445	12	3.3	13	87	12	63	13	9	2	75	1.14
23549708--23549785	21	3.4	23	74	8	70	26	2	30	39	1.70
23549744--23549810	21	3.1	21	82	4	80	29	2	32	34	1.73
23555827--23555868	22	2.0	21	81	13	50	30	33	4	30	1.78
23556169--23556237	10	6.9	10	87	11	88	81	1	5	11	0.93
23556171--23556240	20	3.5	20	88	7	108	80	1	5	12	0.96
23559143--23559173	12	2.7	12	95	5	55	74	6	6	12	1.21
23571151--23571195	14	3.1	14	87	3	63	73	2	22	2	1.05
23571151--23571201	14	3.5	15	83	2	61	74	1	21	1	1.02
23574049--23574083	12	2.8	13	86	4	54	74	2	8	14	1.17
23581470--23581520	13	4.1	13	87	7	70	72	3	7	15	1.23
23583761--23583802	17	2.4	18	80	7	52	57	4	23	14	1.56
23586114--23586158	14	3.1	14	87	3	63	2	22	2	73	1.05
23587957--23588011	20	2.8	20	94	0	92	29	29	14	27	1.95
23592518--23592542	13	1.9	13	100	0	50	16	32	16	36	1.90
23596919--23596960	17	2.4	18	80	7	52	57	4	23	14	1.56
23606104--23607016	468	2.0	468	94	0	1603	28	23	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23608422--23608475	9	6.0	9	78	8	56	16	1	9	72	1.19
23609203--23609256	12	4.6	12	93	4	92	77	9	0	12	0.98
23609203--23609256	23	2.3	23	93	3	90	77	9	0	12	0.98
23609303--23609344	14	2.9	14	82	6	57	71	0	9	19	1.13
23609299--23609352	16	3.7	15	87	9	67	66	0	12	20	1.24
23609298--23609352	13	3.7	15	88	11	87	65	0	12	21	1.26
23617798--23617915	55	2.1	55	84	6	159	25	22	13	38	1.90
23618973--23619026	20	2.7	20	82	0	63	24	20	18	37	1.94
23618973--23619046	30	2.5	30	86	8	98	21	20	18	39	1.93
23618973--23619037	20	3.2	20	71	16	53	23	21	16	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185