genome.fa.s17.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  151  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46605193--46605231	20	2.0	20	94	0	69	28	12	7	51	1.67
46606964--46607371	102	4.0	101	80	6	409	36	16	20	26	1.93
46608616--46608931	101	3.2	97	74	7	274	37	14	20	27	1.92
46608603--46610519	983	2.0	981	93	2	3328	34	16	16	32	1.91
46610872--46611054	96	1.9	97	83	7	239	42	3	15	38	1.66
46611099--46611641	126	4.3	126	89	0	825	32	18	22	26	1.97
46617040--46617070	12	2.6	12	100	0	62	51	6	29	12	1.65
46617021--46617081	12	5.5	11	84	5	52	49	3	27	19	1.64
46619038--46619073	18	1.9	18	88	5	54	58	2	0	38	1.13
46624498--46624522	6	4.2	6	100	0	50	48	0	0	52	1.00
46642341--46642377	14	2.7	14	80	19	51	72	0	13	13	1.11
46643200--46643234	18	1.9	18	88	0	52	82	2	5	8	0.91
46645101--46645133	13	2.4	14	95	5	59	63	15	0	21	1.30
46648990--46649042	24	2.3	23	83	3	61	47	5	0	47	1.26
46652141--46652240	22	4.6	22	70	7	78	23	22	19	36	1.95
46658753--46658878	18	7.0	18	81	0	135	34	17	19	27	1.95
46660571--46661428	286	3.0	286	98	0	1662	28	19	16	35	1.93
46662141--46662185	22	2.0	22	87	8	65	13	15	6	64	1.47
46669572--46669626	24	2.2	24	81	9	58	45	3	3	47	1.38
46669856--46669895	21	1.9	21	94	0	71	60	0	0	40	0.97
46669856--46669904	11	4.3	12	75	19	52	59	0	0	40	0.98
46669869--46670008	39	3.5	39	86	9	201	62	0	2	35	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46670886--46670927	20	2.1	20	95	0	75	21	21	35	21	1.96
46674057--46674115	30	2.0	30	100	0	118	44	18	6	30	1.76
46682493--46682610	62	1.9	62	87	3	175	22	30	23	23	1.99
46687378--46687421	22	2.0	21	82	4	52	40	22	4	31	1.74
46693123--46693204	33	2.4	33	83	4	92	39	0	3	57	1.16
46699284--46699356	31	2.4	31	86	6	96	20	10	23	45	1.83
46702161--46702195	17	2.1	17	100	0	70	20	17	5	57	1.60
46704424--46704457	18	1.9	18	88	5	52	8	26	5	58	1.51
46705885--46705922	13	2.7	14	88	8	51	50	2	2	44	1.30
46706407--46706483	37	2.1	37	83	9	95	40	2	1	55	1.22
46706637--46706662	9	2.9	9	100	0	52	30	34	0	34	1.58
46709566--46709650	28	3.1	28	75	1	100	32	15	17	34	1.91
46712219--46712277	31	1.9	31	89	0	91	45	11	5	37	1.63
46717707--46717747	21	2.0	21	90	9	66	4	17	0	78	0.93
46726494--46726535	19	2.2	20	82	4	50	26	11	4	57	1.54
46732505--46732533	10	2.9	10	100	0	58	62	10	10	17	1.54
46733562--46733667	20	5.3	20	71	8	72	26	24	33	15	1.95
46733612--46733676	20	3.2	20	73	16	62	20	21	38	20	1.94
46733601--46733720	40	3.0	40	81	6	111	26	21	34	17	1.96
46733659--46733736	40	2.0	40	87	5	113	32	19	29	19	1.96
46734137--46734197	30	2.1	29	82	14	72	29	19	1	49	1.58
46747898--46748024	59	2.1	62	82	7	163	44	19	10	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46750976--46751027	20	2.7	20	77	14	63	44	0	1	53	1.11
46751175--46751265	35	2.6	35	70	16	80	26	3	10	59	1.47
46753341--46753376	18	2.0	18	89	10	56	55	25	11	8	1.62
46757016--46757059	19	2.3	20	84	7	56	27	22	11	38	1.88
46762027--46762206	50	3.6	50	73	4	166	34	21	18	26	1.96
46762000--46762250	99	2.5	100	86	1	342	32	21	20	25	1.97
46762010--46762250	50	4.8	49	71	7	162	33	20	21	24	1.97
46762000--46762301	99	3.0	98	82	3	282	32	21	19	25	1.97
46762177--46762414	125	1.9	125	84	1	316	35	22	18	23	1.96
46762540--46763050	46	11.7	44	73	9	377	29	18	22	28	1.98
46762518--46763135	131	4.7	131	97	0	1069	30	18	22	28	1.97
46762978--46763464	172	2.8	172	94	1	823	29	20	21	27	1.98
46762518--46763219	262	2.7	258	88	5	1000	30	18	22	28	1.98
46762758--46763445	85	8.0	85	73	12	472	30	19	21	27	1.98
46763758--46763792	17	2.1	17	89	10	54	54	25	11	8	1.64
46766797--46766895	39	2.5	39	85	3	128	41	21	9	28	1.83
46774957--46775008	12	4.4	12	78	2	52	59	1	1	36	1.19
46777790--46777821	9	3.6	9	100	0	64	12	0	9	78	0.97
46777872--46777923	23	2.3	23	90	6	79	34	13	9	42	1.77
46782251--46782282	9	3.6	9	100	0	64	12	0	9	78	0.97
46782333--46782384	23	2.3	23	90	6	79	34	13	9	42	1.77
46783962--46784036	27	2.7	28	82	12	84	34	4	1	60	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46795188--46795227	21	1.9	21	85	10	55	45	10	5	40	1.60
46795188--46795231	22	2.0	21	83	12	54	47	11	4	36	1.60
46798310--46798363	17	3.1	16	77	15	54	11	5	14	68	1.37
46798321--46798366	23	2.0	23	82	0	56	15	4	17	63	1.47
46808902--46808971	33	2.1	33	91	0	113	38	14	10	37	1.79
46809512--46809714	51	4.0	50	74	11	198	29	27	18	24	1.98
46809522--46809704	101	1.8	102	89	3	289	30	26	19	24	1.98
46810962--46811183	122	1.8	122	87	3	331	31	16	21	31	1.95
46812435--46812563	52	2.5	51	85	6	163	26	13	32	27	1.93
46812435--46812563	51	2.5	52	82	8	165	26	13	32	27	1.93
46814477--46814532	22	2.5	22	91	0	94	58	14	12	14	1.63
46828895--46828976	41	2.0	41	87	0	119	37	29	9	23	1.87
46837307--46837356	20	2.6	19	81	6	64	50	26	12	12	1.74
46840308--46840332	12	2.1	12	100	0	50	68	0	0	32	0.90
46846106--46846145	21	1.9	21	85	10	55	45	0	0	55	0.99
46846201--46846234	16	2.1	16	88	0	50	26	5	0	67	1.13
46851870--46851894	8	3.1	8	100	0	50	52	0	0	48	1.00
46852146--46852197	28	1.9	26	92	7	86	44	25	0	30	1.54
46852146--46852197	13	3.8	13	90	9	86	44	25	0	30	1.54
46857625--46857825	98	2.1	98	99	0	393	30	18	19	31	1.96
46858483--46858521	11	3.4	11	80	13	51	51	0	2	46	1.14
46858487--46858540	28	1.9	28	85	14	76	51	0	1	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46858501--46858538	14	2.4	17	87	12	55	47	0	0	52	1.00
46858737--46858784	19	2.5	20	86	6	64	50	4	8	37	1.52
46858747--46858785	20	2.0	20	95	5	71	51	2	5	41	1.38
46859289--46859322	17	1.9	18	88	5	52	41	0	23	35	1.55
46859620--46859657	18	2.1	18	85	9	51	42	0	18	39	1.50
46859734--46859796	23	2.9	23	76	11	78	17	17	25	39	1.91
46864539--46864579	15	2.7	15	88	7	57	24	4	4	65	1.32
46867368--46867438	29	2.4	29	88	4	90	33	14	5	46	1.67
46867469--46867496	14	2.0	14	100	0	56	64	21	0	14	1.29
46867602--46867663	22	2.8	22	82	4	81	50	25	0	24	1.50
46873911--46873956	3	15.3	3	81	0	56	32	2	4	60	1.28
46874115--46874176	28	2.2	28	75	8	65	35	9	0	54	1.33
46874143--46874169	8	3.4	8	100	0	54	40	11	0	48	1.39
46874034--46874193	50	3.2	51	70	18	129	39	8	2	50	1.46
46874038--46874200	54	3.2	52	71	19	146	40	8	1	49	1.44
46877428--46877595	60	2.8	60	76	4	176	39	4	16	39	1.68
46878294--46878717	125	3.4	123	85	4	573	29	18	21	30	1.97
46879769--46879800	9	3.7	9	95	4	57	56	9	0	34	1.32
46879824--46879953	70	1.9	69	93	1	224	52	12	0	35	1.39
46879851--46879909	25	2.4	25	94	0	100	47	13	0	38	1.43
46879877--46879963	44	2.0	45	90	2	140	52	12	0	34	1.39
46881706--46881748	12	3.8	12	80	20	56	41	0	30	27	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46883893--46884141	55	4.5	55	94	0	426	26	8	15	50	1.72
46884243--46884275	13	2.5	13	95	0	57	54	21	6	18	1.64
46884279--46884306	8	3.5	8	100	0	56	78	0	0	21	0.75
46884931--46885059	10	13.4	9	70	16	73	64	0	2	32	1.12
46884930--46885059	19	6.7	19	73	13	81	64	0	2	32	1.11
46885334--46885399	9	7.0	9	71	10	51	30	3	3	63	1.24
46886748--46887161	202	2.1	199	92	3	661	36	18	12	33	1.88
46889352--46889379	2	14.0	2	100	0	56	50	0	50	0	1.00
46891220--46891274	28	2.0	26	86	6	74	36	20	5	38	1.75
46896072--46896179	56	1.9	55	92	1	180	40	12	7	38	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185