genome.fa.s17.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  152  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46898737--46898791	24	2.3	24	96	0	101	32	7	30	29	1.84
46899763--46899871	56	2.0	55	94	1	191	39	8	11	40	1.72
46901643--46902204	126	4.5	125	82	5	650	29	16	22	31	1.96
46901662--46902205	251	2.2	250	84	2	716	29	16	22	31	1.96
46905380--46906257	21	40.0	22	76	9	769	24	1	30	43	1.63
46905380--46906221	43	19.3	42	76	11	741	24	1	30	43	1.63
46905440--46905495	28	1.9	29	82	13	71	23	0	32	44	1.53
46905389--46905539	72	2.1	73	86	4	209	25	0	30	43	1.60
46906065--46906196	71	1.9	70	88	1	201	23	1	31	43	1.63
46907453--46907527	7	10.7	7	100	0	150	57	14	0	28	1.38
46907696--46907733	20	1.9	20	84	10	51	55	7	2	34	1.43
46908745--46908806	11	5.6	11	88	3	90	45	1	32	20	1.61
46908672--46908769	51	1.9	51	83	4	126	46	2	24	26	1.63
46908733--46908807	22	3.4	21	82	14	89	45	1	30	22	1.61
46908731--46908807	33	2.3	33	84	10	111	45	1	29	23	1.61
46911021--46911257	93	2.5	93	86	4	298	35	14	10	39	1.80
46912942--46913565	23	26.8	22	69	16	268	42	18	12	25	1.86
46912934--46913595	93	7.1	93	92	0	1081	42	18	12	26	1.86
46912942--46913595	187	3.5	187	95	0	1139	42	18	12	25	1.86
46914334--46914488	28	5.5	28	89	0	193	30	27	10	30	1.91
46914334--46914488	84	1.8	84	87	0	229	30	27	10	30	1.91
46924749--46924805	28	2.0	28	100	0	114	31	10	17	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46927273--46927573	41	7.4	40	74	9	207	16	21	21	39	1.92
46927272--46927555	82	3.5	80	81	5	300	16	22	21	39	1.92
46927271--46927573	123	2.5	123	76	5	267	16	22	21	39	1.92
46929831--46929868	10	3.8	10	92	0	67	44	0	13	42	1.43
46929831--46929868	20	1.9	20	100	0	76	44	0	13	42	1.43
46929936--46929987	27	1.9	27	88	0	77	40	0	9	50	1.35
46931979--46932069	45	2.0	45	97	0	173	24	14	23	38	1.91
46940342--46940699	71	5.0	71	82	3	405	25	17	25	31	1.97
46942695--46942730	16	2.2	16	95	0	63	27	0	33	38	1.57
46942705--46942747	16	2.7	16	88	0	59	34	0	37	27	1.57
46942962--46943003	15	2.7	16	82	14	52	52	2	0	45	1.13
46942971--46943012	15	2.9	15	82	10	52	52	0	0	47	1.00
46943096--46943136	16	2.6	16	82	17	50	48	0	2	48	1.14
46943119--46943393	47	5.9	46	69	22	202	46	2	2	47	1.32
46943153--46943411	91	2.8	91	98	0	491	47	2	3	47	1.32
46944408--46944443	17	2.1	17	100	0	72	41	16	0	41	1.48
46951672--46951712	18	2.2	19	87	12	59	41	4	0	53	1.22
46953181--46953212	14	2.1	16	88	11	50	43	0	3	53	1.16
46959911--46959974	22	3.1	21	82	6	69	14	23	15	46	1.82
46959937--46959974	20	2.0	20	89	5	60	5	26	21	47	1.71
46965268--46965321	21	2.6	21	82	5	65	9	22	18	50	1.75
46966518--46966566	22	2.3	22	92	3	82	73	12	14	0	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46975167--46975197	11	2.8	11	95	0	53	19	48	3	29	1.64
46975743--46975799	18	3.2	18	92	0	96	26	24	17	31	1.97
46979853--46979883	11	2.8	11	95	0	53	19	48	3	29	1.64
46987762--46987793	16	1.9	17	93	6	57	56	3	0	40	1.15
47014390--47014426	19	1.9	19	94	0	65	29	27	21	21	1.99
47015181--47015234	15	3.5	15	78	16	58	44	5	7	42	1.55
47020388--47020551	25	6.6	25	73	6	82	23	14	25	37	1.92
47020412--47020807	50	7.9	50	82	1	400	25	13	24	36	1.92
47020434--47020809	25	15.0	25	71	7	208	25	14	24	36	1.93
47029113--47029418	27	11.4	27	77	7	225	20	19	18	41	1.91
47029113--47029418	54	5.7	53	76	8	248	20	19	18	41	1.91
47029130--47029414	81	3.6	78	78	7	286	20	18	18	41	1.90
47037937--47038386	51	8.9	51	75	6	396	30	14	25	29	1.95
47037936--47038386	102	4.4	102	87	2	590	30	14	25	29	1.95
47039727--47039784	11	5.5	11	73	21	52	60	0	3	36	1.14
47039718--47039783	30	2.2	30	97	0	123	59	0	3	37	1.13
47039754--47039788	11	3.0	11	91	8	52	60	0	2	37	1.12
47039778--47039807	15	2.0	15	100	0	60	73	0	0	26	0.84
47039808--47039833	11	2.4	11	100	0	52	53	0	7	38	1.30
47044232--47044336	51	2.2	46	86	8	138	53	9	4	32	1.54
47046501--47046565	25	2.7	23	79	9	76	32	13	10	43	1.79
47046530--47046568	11	3.5	11	79	6	51	28	10	12	48	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47046501--47046568	23	2.9	23	80	8	82	30	13	11	44	1.79
47051206--47051370	43	3.8	43	91	1	242	32	27	15	24	1.95
47055880--47055935	28	2.0	28	89	0	85	48	17	14	19	1.81
47071001--47071029	3	9.7	3	100	0	58	65	0	0	34	0.93
47075013--47075064	25	2.1	25	92	0	86	44	23	7	25	1.79
47087693--47087741	24	2.0	24	100	0	98	38	16	16	28	1.90
47088442--47088685	45	5.5	45	74	10	160	31	20	21	27	1.98
47088530--47088650	44	2.8	44	83	2	145	32	20	19	28	1.97
47088621--47088758	73	1.9	73	83	5	181	27	23	24	24	2.00
47088736--47088868	44	3.0	44	84	2	160	33	18	18	28	1.95
47088902--47089331	225	1.9	223	81	3	524	33	16	21	28	1.96
47089254--47089367	44	2.6	45	78	12	128	28	21	21	28	1.99
47089471--47089706	88	2.7	88	81	7	271	27	23	23	25	2.00
47089448--47089706	89	2.9	89	79	7	274	28	23	23	24	2.00
47089716--47090129	131	3.1	130	85	1	549	29	20	24	26	1.99
47090413--47090443	14	2.2	14	94	0	53	70	16	0	12	1.16
47090556--47090613	19	2.7	22	84	10	68	36	8	17	37	1.80
47094166--47094351	88	2.1	90	80	9	213	34	20	11	32	1.89
47094514--47094561	20	2.3	21	86	10	64	66	6	0	27	1.15
47094533--47094566	11	3.2	11	87	4	52	61	2	0	35	1.11
47094642--47094744	30	3.5	30	77	6	95	34	6	0	57	1.32
47094755--47094795	20	2.1	19	86	9	55	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47095833--47095879	22	2.2	21	88	3	67	61	4	21	12	1.48
47100754--47100800	22	2.2	22	96	3	87	4	12	8	74	1.19
47100755--47100817	21	3.1	21	84	13	71	4	14	7	73	1.23
47102077--47102205	48	2.7	49	91	1	215	39	23	14	22	1.91
47102121--47102201	27	3.2	27	67	16	82	40	22	12	24	1.88
47104935--47105022	25	3.6	25	83	7	101	30	19	26	23	1.98
47106852--47106909	30	1.9	30	85	0	80	20	36	0	43	1.52
47107554--47107579	5	5.2	5	100	0	52	23	19	19	38	1.93
47113779--47113836	28	2.0	28	90	3	89	29	15	6	48	1.71
47113785--47113842	28	2.1	28	93	0	98	31	12	8	48	1.70
47114494--47114588	3	31.7	3	95	0	172	1	31	0	67	0.98
47118736--47119092	143	2.5	144	89	4	537	54	3	8	33	1.50
47121100--47121194	47	2.0	47	97	0	181	26	7	34	31	1.84
47125184--47125208	12	2.1	12	100	0	50	8	0	8	84	0.79
47125644--47125700	3	18.7	3	78	10	53	33	8	0	57	1.29
47129598--47129637	20	2.0	20	95	0	71	32	25	12	30	1.92
47137696--47137861	46	3.5	46	70	9	154	30	20	26	22	1.98
47137696--47137969	96	2.8	96	94	2	467	29	21	25	24	1.99
47137730--47137995	50	5.4	49	70	5	207	30	20	25	24	1.98
47139772--47139828	3	18.7	3	78	10	53	33	8	0	57	1.29
47142006--47142104	52	2.0	48	82	7	117	27	14	17	41	1.87
47150672--47150699	5	5.6	5	100	0	56	82	0	0	17	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47153082--47153394	113	2.8	113	87	2	425	34	16	22	27	1.95
47154574--47154666	21	4.4	21	88	0	132	35	18	44	2	1.62
47155096--47155258	85	1.9	84	88	1	245	25	20	22	31	1.98
47155096--47155260	42	3.9	42	90	1	240	24	20	21	32	1.98
47157282--47157338	27	2.1	27	83	6	71	52	1	12	33	1.49
47157481--47157530	20	2.6	19	78	6	55	28	0	10	62	1.27
47159621--47159645	12	2.1	12	100	0	50	76	8	8	8	1.18
47162271--47162300	15	2.0	15	93	0	51	46	3	6	43	1.46
47165469--47165523	24	2.3	24	84	3	67	58	3	0	38	1.16
47165774--47165826	21	2.5	21	100	0	106	28	43	9	18	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185