genome.fa.s17.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  122  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38131092--38131169	30	2.6	29	78	6	93	33	2	2	61	1.23
38136311--38136373	33	1.9	33	90	3	101	38	19	3	39	1.67
38145394--38145421	9	3.1	9	100	0	56	25	32	10	32	1.90
38147745--38147777	16	2.0	17	94	5	59	39	0	6	54	1.25
38147745--38147782	14	2.5	15	87	12	51	44	0	5	50	1.24
38154201--38154241	22	1.9	21	95	5	73	29	19	31	19	1.96
38155265--38155317	16	3.3	16	86	0	79	37	3	32	26	1.74
38155299--38155391	44	2.1	46	91	4	154	29	4	30	36	1.77
38155299--38155396	46	2.3	44	84	11	125	29	4	31	34	1.76
38155547--38155667	16	7.4	16	66	27	60	57	2	0	38	1.18
38155549--38155681	18	8.0	16	67	22	71	56	2	1	39	1.21
38155721--38155779	15	4.3	14	73	18	52	57	1	0	40	1.09
38171926--38172045	62	1.9	62	94	3	215	52	15	2	29	1.56
38172764--38172802	10	3.9	10	83	10	53	43	5	0	51	1.24
38172763--38172803	19	2.1	20	90	4	66	41	4	0	53	1.22
38178745--38178927	79	2.3	81	83	7	223	24	22	27	24	2.00
38178746--38178929	40	4.6	40	82	9	207	24	22	28	24	2.00
38178798--38178962	79	2.1	79	83	6	201	26	21	27	24	1.99
38189913--38190269	41	8.7	41	89	0	450	21	19	28	30	1.98
38190601--38190633	14	2.3	15	94	5	59	30	0	33	36	1.58
38191161--38191206	22	2.0	22	83	4	56	65	0	0	34	0.93
38194200--38194274	21	3.8	20	79	10	66	26	2	5	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38194200--38194240	20	2.1	19	86	9	55	29	2	7	60	1.36
38194188--38194266	21	3.8	19	77	12	68	27	2	6	63	1.32
38195549--38195659	42	2.6	43	87	4	154	21	15	25	37	1.92
38195549--38195726	43	4.2	43	79	5	157	21	17	26	33	1.96
38197515--38197548	17	2.0	17	94	0	59	38	41	8	11	1.73
38199235--38199284	26	1.9	26	84	15	68	22	12	6	60	1.53
38206749--38206785	9	4.1	9	85	0	56	48	13	8	29	1.71
38209804--38209934	50	2.6	52	83	8	178	33	15	12	38	1.84
38218183--38218326	75	1.9	76	95	1	263	34	15	11	38	1.83
38223692--38223733	20	2.1	20	100	0	84	28	14	14	42	1.84
38223976--38224010	17	1.9	19	88	11	56	8	22	2	65	1.34
38226115--38226153	20	2.0	20	89	0	60	46	15	10	28	1.78
38226121--38226163	20	2.2	20	83	8	52	44	16	13	25	1.85
38233285--38233328	23	1.9	23	85	0	61	25	4	6	63	1.38
38235226--38235279	23	2.3	23	90	6	83	24	46	5	24	1.74
38238806--38238839	7	5.0	7	89	3	52	0	2	41	55	1.15
38244915--38244963	25	2.0	25	87	0	71	38	14	6	40	1.71
38245011--38245069	20	3.0	20	82	0	73	42	20	6	30	1.78
38245221--38245304	26	3.4	25	75	20	86	34	20	21	23	1.97
38245234--38245312	26	3.2	25	84	12	110	34	18	25	21	1.96
38257920--38257951	5	6.4	5	100	0	64	18	0	0	81	0.70
38265481--38265521	14	2.9	14	88	3	55	68	2	2	26	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38271887--38271925	13	3.1	13	88	3	53	46	5	0	48	1.24
38272741--38272888	73	2.0	72	83	6	183	39	1	29	29	1.65
38284321--38284424	43	2.4	43	85	3	129	34	26	14	24	1.94
38286033--38286163	40	3.3	40	88	1	183	45	28	13	12	1.81
38290984--38291033	24	2.1	24	92	0	82	22	8	4	66	1.35
38299411--38299710	94	3.2	94	82	0	386	32	20	21	26	1.98
38299403--38299785	94	4.1	93	79	3	358	33	19	20	26	1.96
38303017--38303143	41	3.1	41	78	4	139	31	19	23	25	1.98
38303035--38303176	41	3.5	41	82	3	135	33	21	23	21	1.97
38310837--38310978	41	3.5	41	83	1	160	30	23	21	23	1.99
38310882--38310989	41	2.6	41	89	0	135	33	22	20	24	1.97
38313751--38313800	10	5.2	10	80	9	50	40	0	2	58	1.10
38313769--38313815	18	2.5	19	86	10	69	34	0	2	63	1.06
38313751--38313873	20	6.2	20	74	15	78	39	0	4	56	1.18
38317961--38318205	123	2.0	123	83	1	312	24	16	26	31	1.96
38320751--38320794	20	2.2	20	84	8	54	61	4	15	18	1.50
38329382--38329409	12	2.3	12	100	0	56	7	14	0	78	0.95
38329746--38329778	16	2.1	15	94	5	57	18	6	6	69	1.30
38336450--38337944	94	16.0	94	81	2	1515	34	19	20	26	1.96
38336501--38337502	44	21.6	43	67	20	343	33	19	20	26	1.96
38343001--38343028	12	2.3	12	100	0	56	28	7	7	57	1.52
38344706--38344749	21	2.1	21	86	0	61	50	0	9	40	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38344998--38345055	31	1.9	30	86	10	82	41	6	1	50	1.39
38346933--38346966	18	1.9	18	88	5	52	55	0	5	38	1.24
38351091--38351126	3	12.3	3	88	5	56	27	0	2	69	1.02
38351408--38351447	17	2.4	17	82	0	53	40	0	2	57	1.12
38352128--38352167	20	1.9	21	85	10	55	45	12	7	35	1.70
38373952--38374364	44	9.5	43	73	10	227	30	20	22	27	1.98
38374215--38374374	87	1.8	87	83	2	214	30	20	23	26	1.98
38376198--38376252	3	18.3	3	96	0	101	30	0	1	67	1.01
38376539--38376578	17	2.4	17	82	0	53	40	0	2	57	1.12
38379990--38380015	12	2.2	12	100	0	52	0	42	0	57	0.98
38379982--38380035	18	3.1	17	79	10	63	0	37	0	62	0.95
38380858--38380964	27	4.0	27	81	2	117	38	15	18	27	1.91
38383968--38383992	11	2.3	11	100	0	50	32	0	8	60	1.26
38395946--38395985	21	1.9	21	84	0	53	27	37	5	30	1.78
38397290--38397437	70	2.1	71	92	1	244	54	10	5	29	1.56
38397852--38397887	17	2.1	18	89	5	56	58	2	5	33	1.36
38401614--38401683	31	2.3	31	92	0	113	30	24	17	28	1.97
38403887--38403925	19	2.1	19	100	0	78	35	5	25	33	1.78
38412598--38412704	20	5.8	18	70	22	62	52	3	3	40	1.37
38413133--38413167	18	1.9	18	100	0	70	34	8	5	51	1.56
38414331--38414363	15	2.1	16	88	5	50	75	9	0	15	1.03
38416261--38416296	3	12.0	3	90	0	54	61	0	2	36	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38416326--38416353	13	2.2	13	100	0	56	57	14	7	21	1.61
38417133--38417233	31	3.3	31	92	0	166	30	23	17	27	1.97
38417600--38417629	3	10.0	3	100	0	60	66	0	0	33	0.92
38419940--38419993	20	2.7	21	82	8	76	33	24	14	27	1.94
38423220--38423249	12	2.5	12	94	0	51	13	23	20	43	1.86
38423765--38423972	91	2.3	91	86	2	274	45	4	3	46	1.41
38424002--38424033	16	1.9	17	93	6	57	53	0	0	46	1.00
38424026--38424238	61	3.4	63	69	17	194	41	2	6	49	1.41
38423988--38424280	120	2.4	120	92	2	482	42	2	5	50	1.36
38424109--38424143	18	2.0	17	88	5	52	40	0	0	60	0.97
38424229--38424263	18	2.0	17	88	5	52	45	0	0	54	0.99
38424217--38424491	147	1.9	149	96	1	509	47	2	3	46	1.32
38424376--38424410	18	2.0	17	88	5	52	45	0	0	54	0.99
38424572--38424666	45	2.1	45	88	1	138	32	27	5	34	1.79
38424647--38424698	16	3.2	16	88	0	77	36	34	0	28	1.58
38424839--38424907	16	4.2	16	88	3	111	27	0	34	37	1.57
38424839--38424907	33	2.1	32	91	2	111	27	0	34	37	1.57
38424888--38424978	45	2.0	45	85	2	121	27	6	28	37	1.82
38425142--38425176	18	2.0	17	88	5	52	54	0	0	45	0.99
38425120--38425386	120	2.2	120	96	0	489	48	5	1	43	1.38
38425260--38425296	16	2.2	17	86	13	51	54	0	2	43	1.14
38425170--38425357	61	3.1	61	72	11	206	47	7	2	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38427821--38427855	18	1.9	18	100	0	70	60	0	28	11	1.32
38428774--38428835	27	2.4	26	77	15	67	35	1	4	58	1.29
38429681--38429720	18	2.2	18	95	0	71	10	0	32	57	1.32
38431831--38431861	10	3.0	10	95	4	53	70	0	0	29	0.87
38436395--38436545	73	2.1	74	87	3	216	29	19	24	26	1.98
38437385--38437449	32	2.0	32	100	0	130	20	24	18	36	1.94
38444045--38444078	12	2.9	12	95	4	61	35	0	0	64	0.94
38444204--38444266	30	2.1	30	93	0	108	57	11	3	28	1.49
38457688--38457721	13	2.5	14	90	9	61	52	11	0	35	1.38
38458095--38458205	48	2.3	49	87	1	152	39	2	5	52	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185