genome.fa.s17.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  148  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45672982--45673021	19	2.1	19	86	9	55	37	0	0	62	0.95
45672981--45673024	20	2.3	19	80	11	54	38	0	0	61	0.96
45695399--45695560	73	2.2	73	88	2	245	28	17	19	34	1.95
45706738--45706779	20	2.2	19	83	8	57	61	2	11	23	1.42
45712535--45712624	40	2.2	40	80	0	108	34	24	26	14	1.94
45712643--45712751	20	5.4	20	66	8	60	33	18	31	17	1.94
45712640--45712762	40	3.1	40	89	2	185	33	17	30	18	1.95
45712536--45712732	108	1.8	108	80	0	241	33	19	28	18	1.96
45715711--45715753	21	2.0	21	86	13	61	37	23	0	39	1.55
45742450--45742672	40	5.6	40	86	3	236	24	21	27	26	1.99
45742525--45742707	79	2.3	80	82	1	226	25	20	27	25	1.99
45750345--45750567	40	5.6	40	86	3	236	24	21	27	26	1.99
45750420--45750602	79	2.3	80	82	1	226	25	20	27	25	1.99
45765295--45765425	40	3.3	40	92	0	181	24	21	27	26	1.99
45783925--45783966	20	2.0	22	86	9	61	40	4	0	54	1.21
45784333--45784460	66	1.9	66	90	1	202	21	24	7	47	1.75
45791152--45791278	66	1.9	66	90	3	202	23	21	33	21	1.97
45791218--45791436	50	4.4	50	84	0	258	25	21	31	21	1.98
45798730--45799072	50	6.8	50	86	3	447	25	21	31	21	1.98
45803286--45803311	6	4.3	6	100	0	52	0	19	0	80	0.71
45807506--45807536	14	2.2	14	94	0	53	61	12	6	19	1.53
45807546--45807592	23	2.0	25	83	8	62	74	6	10	8	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45807576--45807632	19	2.9	19	94	2	96	73	15	1	8	1.16
45810972--45811030	30	1.9	32	83	13	79	69	1	25	3	1.13
45810964--45811091	24	5.2	24	70	17	68	68	0	25	4	1.14
45811025--45811084	26	2.3	26	81	16	72	68	0	26	5	1.10
45819017--45819080	18	3.7	18	68	16	62	48	10	1	39	1.48
45829642--45829693	25	2.0	25	85	3	68	61	7	11	19	1.53
45829709--45829760	5	10.4	5	100	0	104	42	38	0	19	1.51
45835916--45835956	19	2.2	19	95	0	73	51	17	12	19	1.76
45837824--45837857	13	2.6	13	100	0	68	41	14	23	20	1.89
45842116--45842199	21	4.0	20	67	13	60	46	19	20	14	1.84
45842131--45842239	41	2.5	42	86	5	139	49	17	19	13	1.79
45844130--45844159	2	15.0	2	100	0	60	50	50	0	0	1.00
45847966--45848475	253	2.0	253	96	0	948	27	15	20	36	1.93
45851459--45851538	30	2.6	29	76	9	88	38	16	8	36	1.79
45851456--45851575	32	3.8	31	71	11	93	40	15	10	34	1.81
45857567--45857602	17	2.1	18	89	5	56	66	11	2	19	1.35
45858345--45858379	3	11.7	3	87	0	52	62	2	2	31	1.24
45859719--45859819	51	2.0	51	84	0	130	31	22	13	31	1.93
45859831--45859975	51	2.8	51	82	0	173	26	24	18	29	1.98
45859980--45860077	51	1.9	51	89	0	151	28	23	18	29	1.98
45859853--45860225	123	3.0	121	78	9	376	26	25	16	31	1.97
45860014--45860162	79	1.9	79	88	0	226	24	25	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45860094--45860508	46	8.6	47	76	9	275	27	22	17	32	1.96
45860094--45860685	97	6.1	97	86	1	774	28	22	17	31	1.96
45860094--45860685	291	2.0	291	87	0	862	28	22	17	31	1.96
45860996--45861053	24	2.4	24	88	0	89	32	24	8	34	1.86
45866410--45866479	34	2.1	34	97	0	131	25	20	20	34	1.96
45879176--45879250	25	2.6	28	80	20	93	58	1	25	14	1.44
45879182--45879243	25	2.4	25	97	2	115	54	0	27	17	1.43
45882139--45882167	15	1.9	15	100	0	58	62	6	6	24	1.45
45890377--45890542	82	2.0	82	96	0	305	47	13	5	33	1.66
45894626--45894680	23	2.4	23	78	0	65	32	1	3	61	1.24
45900722--45900882	77	2.1	77	98	0	313	33	8	15	42	1.78
45901851--45901877	11	2.5	11	100	0	54	48	25	0	25	1.52
45904905--45905113	92	2.3	91	84	5	251	45	3	4	45	1.41
45905041--45905088	26	1.9	25	84	16	64	45	0	2	52	1.12
45905129--45905541	120	3.4	120	96	1	731	43	2	5	48	1.38
45905254--45905305	15	3.6	15	80	12	56	44	0	1	53	1.11
45905374--45905425	15	3.6	15	80	12	56	44	0	1	53	1.11
45905503--45905544	15	2.7	16	82	14	52	45	0	2	52	1.13
45905494--45905535	15	2.9	15	82	10	52	47	0	0	52	1.00
45905145--45905624	240	2.0	238	83	8	602	44	3	5	47	1.40
45905478--45905790	153	2.0	156	91	4	510	46	5	4	43	1.45
45905913--45905948	16	2.2	16	95	0	63	38	33	0	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45907009--45907152	71	2.0	71	98	0	279	30	23	13	32	1.93
45918956--45919007	24	2.2	24	89	0	77	55	9	1	32	1.43
45920926--45920977	24	2.2	24	89	0	77	55	9	1	32	1.43
45923115--45923190	6	13.0	6	81	13	88	53	0	0	46	1.00
45923117--45923190	19	4.7	15	77	22	64	54	0	0	45	1.00
45924543--45924576	15	2.4	14	85	9	50	73	0	0	26	0.83
45928838--45928889	22	2.3	23	84	15	74	9	0	23	67	1.20
45939388--45939436	19	2.5	20	80	6	64	18	12	8	61	1.55
45940845--45940899	16	3.5	15	75	22	51	38	7	0	54	1.28
45941304--45941538	110	2.1	110	98	0	452	28	11	17	42	1.83
45952754--45952949	45	4.4	45	80	1	223	28	19	24	28	1.98
45952833--45953787	44	21.8	44	78	3	906	32	12	21	32	1.91
45952833--45953779	88	10.8	88	88	2	1180	32	12	21	32	1.91
45953224--45953295	36	2.0	36	88	0	108	38	11	18	31	1.85
45953481--45953647	45	3.7	45	78	6	205	28	13	25	32	1.94
45955643--45955697	16	3.5	15	75	22	51	38	7	0	54	1.28
45957357--45957483	20	6.4	19	69	8	67	22	14	11	52	1.72
45957457--45957542	21	4.3	21	68	14	65	22	13	9	54	1.67
45957413--45957522	40	2.8	40	78	14	120	23	10	10	55	1.64
45958103--45958153	23	2.1	25	82	7	61	64	1	0	33	1.05
45958549--45958618	20	3.6	19	75	11	70	21	24	0	54	1.45
45958609--45958658	20	2.5	21	80	6	59	20	16	10	54	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45959073--45959147	20	3.7	20	67	1	51	46	14	22	16	1.83
45960073--45960165	48	1.9	49	91	2	152	17	18	12	51	1.76
45965966--45966035	29	2.4	29	88	4	97	47	7	5	40	1.55
45966584--45966662	2	39.5	2	100	0	158	50	0	49	0	1.00
45968155--45968199	23	2.0	23	91	4	74	46	17	4	31	1.68
45968181--45968233	19	3.0	17	73	10	52	33	18	9	37	1.83
45968152--45968209	22	2.6	22	86	7	82	43	18	3	34	1.68
45974220--45974264	23	2.0	23	91	4	74	46	17	4	31	1.68
45974217--45974274	22	2.6	22	86	7	82	43	18	3	34	1.68
45991134--45991195	8	7.4	8	76	8	52	79	0	1	19	0.82
45991136--45991195	5	11.8	5	76	16	61	78	0	1	20	0.84
45991131--45991195	16	3.9	16	80	9	69	78	0	1	20	0.83
45991126--45991195	24	2.8	24	78	10	70	77	0	2	20	0.90
45995630--45995680	13	3.9	13	92	0	84	29	7	21	41	1.81
45997606--45997684	39	2.0	39	100	0	158	35	20	10	34	1.86
45999070--45999135	23	2.7	26	81	13	93	39	18	39	3	1.66
45999099--45999181	30	2.7	30	78	10	96	42	14	39	3	1.63
46001800--46001880	40	2.0	40	92	0	135	18	11	30	39	1.86
46011161--46011328	27	6.3	26	88	4	237	16	18	22	42	1.89
46011161--46011323	80	2.0	81	89	3	249	16	19	23	41	1.90
46013235--46013282	3	16.0	3	82	0	60	33	0	4	62	1.14
46013350--46013383	13	2.6	13	95	0	59	38	0	2	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46013716--46013745	16	1.9	15	93	6	51	20	0	0	80	0.72
46023395--46023668	50	5.4	50	76	6	178	28	21	25	23	1.99
46026922--46027041	45	2.5	47	82	10	147	39	19	29	12	1.88
46028302--46028501	44	4.6	44	76	8	201	31	20	23	25	1.98
46028346--46028538	88	2.2	88	90	4	302	32	19	21	26	1.97
46028390--46028536	44	3.3	43	71	15	138	31	18	21	29	1.97
46028599--46028765	44	3.8	44	75	13	130	32	18	21	27	1.97
46030542--46030572	16	2.0	15	93	6	53	16	0	0	83	0.64
46035929--46035981	17	3.1	17	86	0	79	50	3	22	22	1.64
46041448--46041492	23	2.0	23	82	8	56	33	4	11	51	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185