genome.fa.s17.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  150  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46352371--46352422	24	2.2	24	92	0	86	38	11	19	30	1.87
46352717--46352884	51	3.4	50	80	11	202	30	17	25	26	1.98
46352727--46352869	46	3.0	45	79	13	169	27	18	25	27	1.98
46354403--46354454	14	3.7	13	76	23	52	28	5	1	63	1.28
46355759--46355860	23	4.5	23	77	2	71	35	19	11	33	1.88
46357252--46357299	24	2.0	24	92	4	80	10	31	12	45	1.76
46363207--46363427	111	2.0	111	93	1	381	44	15	11	28	1.81
46366497--46366592	19	4.8	20	72	20	67	59	3	0	37	1.13
46366548--46366592	10	4.8	9	80	20	56	64	2	0	33	1.06
46369119--46369329	105	2.0	106	92	0	352	37	11	22	27	1.90
46370008--46370573	126	4.5	125	87	2	787	29	17	23	29	1.97
46373748--46374394	21	30.7	21	76	8	575	26	1	27	45	1.61
46373748--46374402	22	31.0	21	75	9	512	26	1	27	45	1.61
46373748--46374394	43	15.4	42	77	8	568	26	1	27	45	1.61
46375635--46375660	7	3.7	7	100	0	52	57	15	0	26	1.38
46376527--46376682	59	2.7	58	83	9	194	42	3	2	51	1.31
46376855--46376895	16	2.6	16	84	0	55	31	26	4	36	1.78
46376855--46376907	16	3.3	16	76	10	54	30	26	3	39	1.74
46378138--46378191	21	2.6	21	78	0	63	7	48	16	27	1.73
46380762--46381263	9	56.1	8	68	18	99	33	1	16	48	1.55
46380773--46381383	27	23.0	27	80	7	529	33	0	16	49	1.52
46380754--46381383	36	17.6	36	80	8	594	33	1	16	49	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46380754--46381389	18	35.6	17	77	8	432	33	1	15	49	1.52
46385618--46385656	21	1.9	20	89	5	60	43	35	0	20	1.52
46385729--46386255	115	4.6	115	76	5	444	24	23	19	33	1.97
46385716--46386257	229	2.4	230	78	5	580	25	23	18	32	1.97
46386377--46386609	112	2.1	113	84	2	299	24	22	21	32	1.98
46389212--46389277	18	3.7	18	72	10	55	34	1	3	60	1.21
46393724--46393759	3	12.0	3	100	0	72	33	33	0	33	1.58
46394829--46394862	12	2.8	12	90	4	50	79	0	5	14	0.91
46400027--46400063	17	2.1	18	90	5	58	67	2	29	0	1.04
46400016--46400072	23	2.6	21	81	10	60	71	1	26	0	0.95
46400617--46400652	17	2.1	17	100	0	72	36	0	0	63	0.94
46400620--46400659	17	2.3	17	91	4	62	35	0	0	65	0.93
46401060--46401108	22	2.4	20	80	10	55	46	12	20	20	1.82
46401374--46401415	13	2.9	14	80	13	50	54	0	0	45	0.99
46401378--46401414	16	2.3	16	86	13	58	59	0	0	40	0.97
46405038--46405087	15	3.3	15	82	0	64	38	34	10	18	1.84
46405540--46405639	6	16.7	6	78	0	92	60	13	6	21	1.54
46405539--46405651	18	6.3	18	74	8	95	58	11	7	22	1.58
46406697--46406745	24	2.0	25	88	4	73	51	2	2	44	1.24
46406719--46406755	19	2.0	19	89	5	58	43	0	2	54	1.14
46409409--46409654	44	5.3	44	70	10	150	27	23	20	28	1.99
46409437--46409856	143	2.9	142	84	1	536	27	23	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46428117--46428154	15	2.5	15	100	0	76	44	21	26	7	1.79
46433067--46433166	51	2.0	50	88	2	146	52	10	30	8	1.64
46434387--46434433	24	2.0	22	84	8	58	72	2	14	10	1.21
46436308--46436353	23	2.0	22	83	4	56	54	2	0	43	1.12
46437052--46437114	23	2.7	23	87	0	81	26	22	28	22	1.99
46438090--46438710	312	2.0	304	83	6	788	40	9	14	35	1.78
46438853--46438933	41	2.0	41	87	0	117	39	8	1	50	1.41
46441468--46441528	11	5.5	11	75	16	54	37	1	6	54	1.37
46441958--46441991	14	2.4	14	90	0	50	44	2	8	44	1.50
46449051--46449094	19	2.3	19	96	0	79	20	6	22	50	1.72
46463799--46464406	9	68.1	9	75	10	534	33	0	15	50	1.51
46468581--46469113	114	4.7	114	76	7	450	25	23	18	32	1.97
46469233--46469460	110	2.1	111	84	4	293	24	22	21	32	1.98
46472043--46472113	18	4.1	16	72	27	56	35	1	4	59	1.26
46472033--46472112	19	4.4	17	72	27	51	35	1	3	60	1.23
46476549--46476581	3	11.0	3	100	0	66	33	33	0	33	1.58
46477650--46477683	12	2.8	12	90	4	50	79	0	5	14	0.91
46482834--46482870	17	2.1	18	90	5	58	67	2	29	0	1.04
46482823--46482879	23	2.6	21	81	10	60	71	1	26	0	0.95
46483423--46483458	19	1.9	19	94	5	65	33	0	0	66	0.92
46483424--46483465	19	2.3	18	87	4	57	33	0	0	66	0.92
46483864--46483912	22	2.4	20	80	10	55	46	12	20	20	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46484178--46484219	13	2.9	14	80	13	50	54	0	0	45	0.99
46484182--46484218	16	2.3	16	86	13	58	59	0	0	40	0.97
46487826--46487875	15	3.3	15	82	0	64	38	34	10	18	1.84
46488325--46488424	6	16.7	6	78	0	92	60	13	6	21	1.54
46488324--46488436	18	6.3	18	74	8	95	58	11	7	22	1.58
46489500--46489536	19	2.0	19	89	5	58	43	0	2	54	1.14
46492170--46492415	44	5.3	44	70	10	150	27	23	20	28	1.99
46492198--46492618	143	3.0	143	84	2	542	27	23	19	29	1.98
46499754--46499797	19	2.3	19	96	0	79	50	22	6	20	1.72
46506394--46506485	31	3.0	31	68	9	89	36	11	14	36	1.83
46506863--46506896	14	2.4	14	90	0	50	44	8	2	44	1.50
46507571--46507610	21	1.9	21	85	10	55	7	27	0	65	1.20
46509905--46509985	41	2.0	41	87	0	117	50	1	8	39	1.41
46511721--46511786	23	2.9	23	83	0	87	22	28	22	25	1.99
46512981--46513548	298	1.9	298	84	6	774	34	13	11	40	1.81
46515746--46515845	51	2.0	50	88	2	146	8	30	10	52	1.64
46519830--46519892	27	2.3	27	91	0	99	12	30	33	23	1.92
46521179--46521216	15	2.5	15	100	0	76	7	26	21	44	1.79
46523690--46523871	48	3.8	48	94	1	330	48	6	8	36	1.59
46523690--46523867	95	1.9	96	98	1	349	47	6	8	37	1.60
46527090--46527298	92	2.3	91	85	5	269	45	3	4	46	1.41
46527226--46527273	26	1.9	25	84	16	64	45	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46527352--46527682	66	5.4	63	67	22	238	42	2	6	48	1.42
46527314--46527726	120	3.4	120	95	2	724	43	2	5	49	1.37
46527439--46527490	15	3.6	15	80	12	56	44	0	1	53	1.11
46527559--46527610	15	3.6	15	80	12	56	44	0	1	53	1.11
46527688--46527729	15	2.7	16	82	14	52	45	0	2	52	1.13
46527679--46527720	15	2.9	15	82	10	52	47	0	0	52	1.00
46527663--46527975	153	2.0	156	91	2	506	46	5	4	43	1.47
46528098--46528133	16	2.2	16	100	0	72	38	36	0	25	1.56
46529502--46529595	19	4.8	19	89	5	125	38	19	8	34	1.82
46529479--46529594	40	2.8	40	84	7	137	39	18	7	34	1.79
46529919--46529968	25	2.0	25	100	0	100	28	16	24	32	1.96
46529964--46530241	89	3.2	89	88	3	436	28	24	15	32	1.95
46529996--46530245	44	5.7	44	79	4	281	29	24	14	31	1.95
46530206--46530618	88	4.7	88	87	0	529	25	25	23	25	2.00
46530296--46530615	44	7.3	44	66	6	182	26	26	23	23	2.00
46537519--46537593	19	3.8	19	87	6	105	37	17	10	34	1.84
46538021--46538116	27	3.6	28	86	6	121	44	2	0	53	1.12
46538836--46538898	27	2.3	27	97	0	117	22	34	31	11	1.89
46538945--46538992	21	2.2	23	82	14	66	18	2	4	75	1.07
46541692--46541718	3	9.0	3	100	0	54	33	0	0	66	0.92
46544297--46544342	24	1.9	24	86	8	67	47	23	2	26	1.63
46544926--46545059	71	1.9	71	93	0	232	32	5	23	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46550011--46550071	19	3.3	19	84	6	81	73	4	0	21	1.01
46550216--46550272	29	2.0	28	82	3	69	43	3	12	40	1.59
46553139--46553337	42	4.7	41	86	5	192	29	24	17	28	1.97
46553139--46553337	84	2.4	83	83	7	242	29	24	17	28	1.97
46553590--46553641	20	2.7	19	80	13	61	42	17	0	40	1.49
46554554--46554601	24	2.0	24	100	0	96	16	45	8	29	1.76
46560853--46560878	5	5.2	5	100	0	52	38	0	0	61	0.96
46577249--46577377	42	3.1	42	82	2	161	16	20	18	44	1.87
46583224--46583323	42	2.4	42	94	0	173	35	10	28	27	1.89
46604365--46604393	7	4.1	7	100	0	58	31	0	27	41	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185