Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  185  of  185  ( 22116 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56496167--56496209
19
2.3
19
79
0
50
41
9
2
46
1.48
56505066--56505107
20
2.1
20
82
8
50
42
7
4
45
1.52
56505220--56505265
22
2.0
22
87
8
65
52
4
0
43
1.21
56508825--56508857
16
2.1
16
94
0
57
66
0
3
30
1.06
56544578--56544645
32
2.1
32
81
10
77
54
4
5
35
1.45
56544605--56544720
59
2.0
60
84
1
153
51
7
6
34
1.55
56544984--56545026
22
2.0
22
100
0
86
27
30
4
37
1.77
56545073--56545126
21
2.5
21
93
3
90
44
18
11
25
1.83
56550245--56550275
13
2.4
13
94
0
53
77
0
0
22
0.77
56558061--56558112
24
2.2
24
82
6
61
34
5
3
55
1.42
56560071--56560099
13
2.2
13
100
0
58
34
0
44
20
1.52
56561564--56561602
14
2.8
14
96
0
69
28
15
7
48
1.72
56566981--56567032
26
2.0
27
85
11
72
0
32
1
65
1.04
56569074--56569140
16
4.3
15
77
9
62
17
31
23
26
1.97
56569220--56569259
17
2.4
17
83
4
55
65
20
10
5
1.42
56569635--56569689
22
2.7
20
75
10
58
58
0
3
38
1.16
56571006--56571044
2
19.5
2
100
0
78
48
0
51
0
1.00
56572359--56572393
10
3.4
10
84
7
52
71
0
0
28
0.86
56573925--56573968
24
1.9
24
90
9
74
36
0
2
61
1.09
56574035--56574116
29
2.8
30
66
14
71
41
7
7
43
1.60
56574156--56574197
16
2.6
16
92
0
66
42
7
2
47
1.43
56574171--56574226
23
2.5
23
82
2
69
44
1
1
51
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56578184--56578707
229
2.3
229
86
3
725
23
15
13
47
1.81
56581095--56581178
40
2.1
40
100
0
168
11
11
38
38
1.79
56581819--56581844
8
3.2
8
100
0
52
26
23
0
50
1.50
56582065--56582105
21
2.0
21
90
9
66
12
17
21
48
1.79
56584166--56584199
14
2.4
14
90
0
50
44
2
2
50
1.32
56588674--56588715
14
2.9
14
89
3
66
14
7
42
35
1.73
56588673--56588717
7
6.3
7
89
5
54
13
6
40
40
1.71
56588720--56588791
13
5.8
12
82
9
81
1
6
63
27
1.28
56588720--56588817
6
15.7
6
80
8
97
3
6
60
30
1.36
56588794--56598092
7
1324.7
7
93
4
14710
12
0
43
42
1.48
56588720--56588817
19
5.2
18
81
7
97
3
6
60
30
1.36
56588766--56588869
33
3.2
32
83
2
102
9
4
50
35
1.57
56588855--56588984
13
9.9
14
76
21
104
6
5
47
40
1.51
56591932--56591974
1
43.0
1
90
0
50
2
0
6
90
0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185

The End!