genome.fa.s17.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  97  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30489866--30489948	21	4.0	21	78	4	80	69	0	21	8	1.14
30496848--30497333	47	10.2	47	90	2	729	31	8	30	29	1.86
30496848--30497333	96	5.1	94	90	2	738	31	8	30	29	1.86
30497451--30497529	37	2.1	37	90	0	122	24	18	31	25	1.98
30511209--30511254	21	2.1	22	84	4	58	67	2	23	6	1.25
30515032--30515094	21	3.0	21	88	2	81	33	31	4	30	1.78
30519661--30519740	18	4.5	17	72	14	56	15	28	1	55	1.48
30519781--30519812	15	2.1	16	94	5	57	6	21	0	71	1.07
30521604--30521629	10	2.6	10	100	0	52	23	30	30	15	1.95
30522765--30522851	28	3.1	28	77	8	88	54	10	6	28	1.60
30522925--30522992	20	3.4	20	87	4	93	29	17	29	23	1.97
30525793--30525855	31	2.0	31	81	0	72	15	11	4	68	1.36
30526109--30526603	247	2.0	247	92	0	828	36	20	20	22	1.95
30528851--30528897	23	2.1	23	84	7	62	51	12	4	31	1.59
30532903--30532939	14	2.7	14	91	4	58	64	2	13	18	1.39
30532918--30532957	17	2.3	18	95	4	73	67	2	10	20	1.31
30543836--30543890	20	2.8	20	88	0	83	25	29	16	29	1.97
30560878--30561020	74	1.9	75	89	1	225	41	11	15	30	1.83
30563743--30563800	24	2.4	24	80	11	73	46	18	13	20	1.83
30565950--30565990	20	1.9	21	85	14	57	46	2	0	51	1.14
30565913--30565997	39	2.2	40	78	16	90	43	3	1	51	1.26
30566322--30566362	21	2.0	21	85	0	55	31	2	14	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30567583--30567642	30	2.0	30	90	0	93	55	13	5	26	1.59
30567674--30567722	22	2.2	22	78	7	55	63	12	10	14	1.53
30570433--30570483	26	2.0	26	92	0	84	43	23	5	27	1.77
30571132--30571170	20	1.9	21	89	5	62	51	0	5	43	1.24
30585148--30585187	14	2.9	14	84	0	53	35	7	15	42	1.75
30585171--30585210	20	2.0	20	90	0	62	30	10	10	50	1.69
30585156--30585222	34	1.9	35	87	3	100	32	8	10	47	1.69
30585309--30585347	20	2.0	20	94	0	69	48	2	0	48	1.15
30585378--30585430	17	3.2	15	80	17	52	41	1	1	54	1.22
30588746--30588795	25	2.0	25	84	0	64	62	4	28	6	1.37
30588858--30588892	18	1.9	18	94	0	61	42	0	57	0	0.99
30592824--30592892	26	2.7	26	88	0	102	21	24	24	28	1.99
30596969--30597011	18	2.4	18	84	0	50	74	2	0	23	0.93
30597998--30598024	7	3.9	7	100	0	54	85	0	0	14	0.61
30603254--30603284	15	2.0	16	93	6	55	51	9	6	32	1.60
30609104--30609209	43	2.5	43	89	3	160	33	21	14	30	1.93
30609256--30609360	43	2.4	43	77	3	104	35	15	20	29	1.93
30609607--30609642	18	2.1	18	89	5	56	58	0	2	38	1.13
30617412--30617596	51	3.7	50	79	6	178	24	17	28	29	1.97
30617822--30617853	16	2.0	16	93	0	55	59	0	15	25	1.36
30623367--30624195	414	2.0	414	99	0	1649	34	20	19	25	1.96
30631703--30631797	33	2.8	33	77	4	93	18	22	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30633909--30633961	25	2.0	27	85	7	74	26	16	7	49	1.73
30639258--30639300	21	2.0	22	86	4	61	34	27	20	16	1.94
30641949--30641997	18	2.8	18	73	14	57	22	4	4	69	1.23
30644644--30645001	27	13.3	27	81	5	343	43	19	15	21	1.87
30646404--30646470	33	2.0	33	85	0	89	29	14	22	32	1.94
30647233--30647295	28	2.1	29	82	11	74	60	9	4	25	1.47
30648798--30648904	41	2.6	41	80	2	117	29	25	16	28	1.97
30653859--30653908	18	2.5	20	87	9	68	72	4	20	4	1.18
30659806--30659845	20	2.0	20	85	0	53	25	12	12	50	1.75
30663787--30663895	41	2.7	41	84	2	139	29	26	16	27	1.97
30668507--30668544	18	2.1	18	95	0	67	31	23	10	34	1.89
30674373--30674418	24	1.9	24	86	8	67	21	30	26	21	1.99
30675571--30675607	13	2.7	15	88	12	53	70	2	0	27	1.01
30676854--30677080	43	5.4	43	79	8	236	35	26	16	21	1.94
30676846--30677083	85	2.8	85	90	1	354	34	26	17	21	1.96
30676854--30677080	42	5.4	42	79	9	239	35	26	16	21	1.94
30680345--30680425	41	2.0	42	85	7	112	30	23	14	30	1.95
30680836--30680888	24	2.2	24	96	0	97	18	13	3	64	1.43
30682973--30683210	85	2.8	85	88	0	343	35	25	15	23	1.94
30682973--30683207	43	5.6	43	77	9	225	36	25	15	22	1.94
30683573--30683630	30	1.9	30	85	0	80	31	20	6	41	1.79
30688919--30688978	28	2.2	28	84	3	77	30	23	23	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30689371--30689570	26	7.7	24	77	10	100	27	17	19	37	1.93
30689398--30689570	26	6.7	26	85	1	231	27	16	19	36	1.93
30689370--30689570	52	3.8	52	83	5	230	26	16	19	36	1.93
30689398--30689570	78	2.2	78	89	0	265	27	16	19	36	1.93
30696486--30696550	28	2.4	28	78	2	69	30	24	23	21	1.99
30696711--30696762	27	1.9	27	92	0	86	30	23	26	19	1.98
30696913--30696974	27	2.3	27	80	5	72	22	19	25	32	1.97
30696969--30697220	26	9.7	26	89	1	344	26	15	19	38	1.91
30696932--30697220	52	5.5	52	87	2	384	25	16	20	38	1.92
30706246--30706310	33	1.9	34	90	3	105	16	3	43	36	1.64
30707355--30707406	27	1.9	27	84	0	68	32	23	25	19	1.97
30708793--30708820	10	2.8	10	100	0	56	21	67	0	10	1.20
30709131--30711036	951	2.0	951	91	1	3120	30	24	16	27	1.97
30715658--30715920	131	2.0	131	99	0	517	31	37	15	15	1.88
30716135--30716370	26	9.1	26	79	4	199	28	16	17	37	1.91
30716146--30716370	52	4.3	52	81	7	226	29	15	16	38	1.90
30716172--30716370	78	2.6	76	82	10	240	30	15	17	37	1.90
30724672--30724727	28	2.0	28	96	0	103	26	17	7	48	1.73
30726850--30728566	859	2.0	859	99	0	3380	29	22	15	33	1.94
30733899--30734240	23	14.8	23	73	14	215	40	18	14	27	1.89
30733894--30734283	93	4.2	93	94	1	658	40	18	13	28	1.88
30733894--30734293	47	8.6	47	78	3	425	39	18	13	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30733894--30734291	23	17.1	22	68	17	130	39	18	13	27	1.89
30735018--30735142	28	4.5	28	89	0	178	32	24	11	32	1.90
30748864--30749041	27	6.6	26	82	6	178	26	16	28	28	1.97
30748865--30749020	82	1.9	81	86	3	224	26	16	28	28	1.97
30748861--30749041	82	2.2	81	82	2	220	27	16	27	28	1.97
30748946--30749052	27	3.9	27	83	1	79	26	15	28	29	1.96
30756965--30757143	27	6.6	27	81	7	175	26	15	28	29	1.96
30756967--30757122	82	1.9	81	85	3	215	26	15	28	28	1.96
30756963--30757143	82	2.2	81	80	2	211	27	14	28	29	1.96
30757101--30757154	27	2.0	27	81	0	63	27	14	27	29	1.95
30759558--30759586	12	2.3	13	94	5	51	68	0	0	31	0.89
30759558--30759587	13	2.3	13	94	0	51	70	0	0	30	0.88
30760306--30760365	30	2.0	30	86	0	84	30	21	8	40	1.83
30762588--30762672	24	3.5	24	75	9	66	42	5	37	14	1.69
30768097--30768121	10	2.5	10	100	0	50	20	0	24	56	1.43
30772064--30772111	22	2.0	24	84	11	64	50	2	8	39	1.44
30776539--30777095	138	4.1	137	86	3	773	39	7	6	46	1.58
30778424--30778455	15	2.2	15	94	5	57	50	0	31	18	1.48
30780345--30780372	12	2.3	12	100	0	56	46	28	0	25	1.53
30785495--30785666	32	5.4	32	85	3	204	40	18	18	23	1.91
30785676--30785747	26	2.8	26	89	0	108	38	25	19	16	1.92
30785735--30785794	27	2.2	27	88	11	88	31	21	25	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30785942--30786085	54	2.7	54	83	4	168	25	23	18	32	1.97
30785941--30786085	27	5.4	27	79	5	152	26	23	17	32	1.97
30792009--30792271	40	6.6	40	87	3	307	25	20	27	26	1.99
30799964--30800226	40	6.6	40	87	3	307	25	20	27	26	1.99
30802471--30802539	3	23.0	3	84	0	93	33	7	0	59	1.25
30803734--30803782	23	2.1	23	85	7	64	10	18	0	71	1.13
30822517--30822562	20	2.3	18	82	17	56	43	2	2	52	1.25
30826762--30826815	24	2.2	24	86	3	72	40	12	27	18	1.87
30829502--30829578	29	2.6	29	81	4	82	48	12	12	25	1.78
30836821--30836888	24	2.8	25	83	14	74	66	1	0	32	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185