genome.fa.s17.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  118  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36985868--36986125	25	10.4	25	66	17	90	25	16	18	39	1.91
36985857--36986108	74	3.4	75	69	11	192	26	16	19	38	1.92
36985893--36986125	50	4.7	50	77	5	222	25	15	19	39	1.91
36991519--36991575	27	2.1	28	83	9	73	28	10	21	40	1.86
36991469--36991632	77	2.1	77	85	2	213	25	14	23	37	1.92
37004748--37004942	98	2.0	98	92	0	327	26	9	24	38	1.86
37013259--37013292	17	2.0	17	88	11	52	41	26	5	26	1.78
37013446--37014846	700	2.0	703	95	1	2531	35	18	12	32	1.89
37025946--37026132	93	2.0	93	94	0	329	29	18	19	31	1.96
37028945--37028969	9	2.8	9	100	0	50	32	0	0	68	0.90
37035644--37035676	17	1.9	17	93	0	57	15	12	15	57	1.65
37041157--37041187	15	2.1	15	93	0	53	64	6	0	29	1.18
37046040--37046087	23	2.1	23	84	7	62	31	0	16	52	1.45
37056018--37056090	33	2.2	33	97	2	137	36	12	12	38	1.81
37056543--37056571	15	1.9	15	100	0	58	31	34	13	20	1.92
37058423--37058502	25	3.2	24	82	5	81	16	27	21	35	1.94
37058345--37058491	49	3.0	48	75	13	127	19	27	20	33	1.96
37061703--37061804	27	3.8	27	73	2	98	27	24	16	31	1.96
37061756--37061828	27	2.7	27	84	0	83	24	23	13	38	1.91
37064822--37064897	30	2.6	30	80	2	91	50	0	1	48	1.09
37066705--37066810	52	2.0	52	98	0	203	46	16	4	32	1.68
37067180--37067237	22	2.6	22	88	2	89	32	29	0	37	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37067207--37067322	51	2.3	51	92	0	187	29	24	0	46	1.53
37068465--37068489	7	3.6	7	100	0	50	28	0	12	60	1.32
37069142--37069176	18	1.9	18	94	0	61	25	31	8	34	1.86
37071897--37072267	126	3.0	125	86	2	530	33	21	14	29	1.94
37072828--37072879	24	2.2	24	92	0	86	55	7	1	34	1.39
37073022--37073052	16	1.9	16	100	0	62	38	6	25	29	1.81
37079687--37079806	51	2.4	50	84	6	145	27	19	7	45	1.77
37081590--37081647	27	2.2	25	85	11	73	29	3	6	60	1.39
37083293--37083330	17	2.4	17	86	8	53	68	2	2	26	1.16
37087012--37087058	20	2.4	20	85	3	60	29	8	12	48	1.71
37098212--37098254	21	2.0	21	86	8	61	37	6	11	44	1.68
37099692--37099769	32	2.4	32	82	0	102	29	2	14	53	1.53
37101192--37101234	14	2.9	15	86	10	54	41	13	4	39	1.66
37125950--37126006	29	2.0	29	96	0	105	31	24	12	31	1.92
37135031--37135267	44	5.1	44	65	20	124	35	19	21	24	1.96
37134965--37135512	188	2.9	187	84	2	627	35	18	20	26	1.95
37135040--37135522	187	2.6	186	84	3	585	36	18	19	25	1.94
37134965--37135518	94	5.9	93	79	6	506	35	18	20	26	1.95
37141127--37141244	54	2.2	54	93	1	202	36	17	14	31	1.90
37143664--37143714	23	2.2	23	89	0	75	27	7	21	43	1.80
37149667--37149698	3	10.7	3	100	0	64	65	0	0	34	0.93
37149697--37149727	3	10.3	3	100	0	62	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37151339--37151502	43	3.9	42	85	1	211	26	31	18	23	1.97
37151339--37151502	85	1.9	85	88	0	247	26	31	18	23	1.97
37151681--37151855	43	4.1	43	81	1	208	27	26	18	26	1.98
37151672--37151839	85	2.0	85	86	0	237	27	25	17	28	1.98
37156493--37156522	13	2.2	14	94	5	53	33	40	0	26	1.57
37156549--37156581	14	2.3	15	94	5	59	36	33	0	30	1.58
37156929--37157002	13	5.7	13	75	10	71	64	2	2	29	1.21
37156929--37157004	38	2.0	40	86	5	111	64	2	3	28	1.25
37156954--37156996	16	2.5	17	88	7	61	67	2	2	27	1.15
37156947--37157009	21	3.2	21	73	15	62	63	4	3	28	1.30
37156954--37157016	21	3.2	21	78	10	71	63	3	3	30	1.25
37157012--37157756	114	6.5	114	88	2	1102	27	26	20	25	1.99
37166081--37166126	3	15.3	3	100	0	92	34	0	32	32	1.58
37166633--37166659	8	3.4	8	100	0	54	25	25	11	37	1.89
37171014--37171054	21	2.0	21	90	0	64	14	4	0	80	0.87
37171137--37171184	18	2.5	19	83	13	62	33	0	2	64	1.05
37183202--37183753	44	12.7	45	69	18	248	29	21	23	26	1.99
37183110--37183745	216	2.9	217	91	1	1033	28	21	22	26	1.99
37185081--37185134	16	3.3	16	76	2	63	20	1	0	77	0.86
37185059--37185134	30	2.4	32	82	12	86	18	3	2	75	1.08
37185193--37185290	22	4.6	21	69	20	69	33	2	3	61	1.23
37185197--37185244	18	2.5	19	86	13	71	31	0	4	64	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37199343--37199401	31	1.9	31	89	0	91	20	18	10	50	1.75
37199631--37199688	22	2.8	20	72	10	62	34	3	22	39	1.71
37199808--37199853	24	1.9	25	86	8	69	15	15	0	69	1.19
37201667--37201702	18	2.1	17	89	5	54	58	16	16	8	1.61
37202280--37202356	14	5.0	15	71	20	52	42	14	9	33	1.77
37202296--37202335	20	2.0	20	90	0	62	50	12	10	27	1.72
37202284--37202350	34	1.9	35	90	3	109	46	13	8	31	1.74
37212628--37212760	50	2.6	50	84	3	169	24	18	25	31	1.97
37212628--37212770	51	2.8	50	81	4	180	25	18	25	30	1.98
37212770--37212856	45	1.9	45	86	4	122	27	16	20	35	1.94
37214360--37214416	21	2.8	20	76	20	55	38	1	15	43	1.57
37220196--37220490	51	5.8	51	80	6	323	29	26	15	28	1.96
37220196--37220490	102	2.9	102	91	0	448	29	26	15	28	1.96
37220197--37220486	153	1.9	151	83	4	377	30	26	14	28	1.95
37221864--37221894	11	2.8	11	90	0	53	67	0	0	32	0.91
37222503--37222610	55	2.0	54	96	1	198	25	11	13	49	1.76
37235803--37235921	51	2.4	51	84	4	143	25	18	25	31	1.98
37235930--37236016	45	1.9	45	86	4	122	27	16	20	35	1.94
37237517--37237573	21	2.8	20	76	20	55	38	1	15	43	1.57
37243312--37243596	100	2.9	99	87	7	388	30	27	14	27	1.95
37243313--37243596	49	5.8	50	78	9	291	30	27	14	27	1.95
37244962--37244992	11	2.8	11	90	0	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37245620--37245707	29	3.1	29	62	21	69	23	11	12	52	1.71
37245601--37245709	55	2.0	55	98	0	209	25	11	13	49	1.75
37250362--37250388	13	2.1	13	100	0	54	37	0	14	48	1.45
37250365--37250411	13	3.6	13	82	0	58	34	4	23	38	1.74
37258711--37258750	19	2.2	19	86	4	55	30	12	0	57	1.36
37264774--37264814	21	2.0	21	100	0	82	48	9	4	36	1.58
37266579--37266636	21	2.8	21	100	0	116	12	15	24	48	1.79
37266700--37266936	43	5.5	43	81	7	277	28	27	16	27	1.97
37267049--37267133	27	3.2	26	70	12	66	52	3	2	41	1.31
37268451--37268487	16	2.3	16	95	0	65	40	13	18	27	1.88
37276018--37276066	21	2.3	21	92	0	80	28	40	10	20	1.85
37277729--37277782	21	2.5	21	84	3	72	35	42	0	22	1.54
37277749--37277800	14	3.7	14	75	7	52	36	40	0	23	1.55
37277771--37277811	21	2.0	20	85	4	55	39	41	0	19	1.52
37277991--37278038	25	1.9	25	91	0	78	60	2	2	35	1.20
37278108--37278145	14	2.6	15	87	8	60	31	52	0	15	1.43
37278130--37278180	21	2.4	21	83	9	68	35	39	0	25	1.56
37278104--37278191	7	12.4	7	75	11	54	36	39	0	23	1.55
37278557--37278868	41	7.6	41	87	0	356	27	27	20	24	1.99
37284945--37284984	18	2.2	18	86	0	53	70	0	5	25	1.08
37287865--37287940	22	3.4	22	79	16	77	26	28	2	42	1.69
37287865--37287939	33	2.2	33	79	6	80	25	29	2	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37287865--37287941	11	6.9	11	68	24	54	25	28	2	42	1.68
37287903--37288000	51	1.9	51	83	4	126	28	23	2	45	1.64
37289782--37289821	18	2.2	18	86	0	53	17	30	7	45	1.76
37290358--37290540	22	8.4	22	78	3	190	43	28	1	26	1.62
37290367--37290539	43	4.0	43	83	3	186	43	30	1	25	1.62
37290367--37290540	65	2.7	66	81	2	199	43	29	1	25	1.62
37290540--37290900	126	2.9	125	85	2	485	30	22	17	29	1.96
37295208--37295246	17	2.3	16	83	12	51	12	20	33	33	1.91
37307260--37307311	17	3.0	17	75	10	52	61	3	1	32	1.25
37307282--37307322	17	2.4	19	80	19	54	56	4	0	39	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185