genome.fa.s17.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  116  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36292178--36292244	27	2.5	27	85	0	89	17	32	25	23	1.97
36292724--36292755	15	2.1	15	94	0	55	21	9	31	37	1.85
36292731--36292763	15	2.2	15	94	0	57	24	6	30	39	1.79
36297343--36297392	12	4.2	12	77	10	50	74	2	4	20	1.08
36297452--36297483	8	3.9	8	92	8	55	75	0	3	21	0.95
36297452--36297483	17	1.9	17	93	6	57	75	0	3	21	0.95
36298838--36298993	44	3.6	44	76	5	140	30	19	20	28	1.97
36298962--36299767	143	5.6	143	86	1	1062	28	21	19	30	1.97
36299441--36299563	44	2.8	44	77	6	124	26	23	22	26	2.00
36300627--36300678	17	3.1	16	84	13	68	1	17	0	80	0.80
36303254--36303293	5	8.4	5	79	20	50	40	15	20	25	1.90
36303258--36303301	9	4.8	9	86	11	54	45	13	18	22	1.84
36305375--36305419	9	5.2	9	77	17	51	68	2	2	26	1.12
36306980--36307119	48	2.9	48	73	8	131	23	17	17	41	1.90
36310112--36310373	39	6.7	40	87	7	328	24	27	22	25	2.00
36318145--36318406	39	6.7	40	87	7	319	24	27	22	25	2.00
36354839--36354887	25	1.9	26	87	4	73	42	10	10	36	1.73
36354932--36354989	29	2.0	29	96	0	107	41	8	6	43	1.62
36362259--36362686	222	2.0	210	89	5	649	35	16	15	32	1.90
36362186--36362714	112	4.7	114	81	12	600	33	15	14	35	1.89
36365970--36366003	17	2.0	17	100	0	68	47	5	23	23	1.73
36377801--36377843	22	2.0	22	82	17	54	53	27	4	13	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36377925--36378143	39	5.6	39	87	1	305	44	20	3	31	1.69
36383094--36383161	35	1.9	36	85	8	95	38	16	11	33	1.85
36386499--36386541	22	2.0	22	86	4	61	2	13	11	72	1.22
36386505--36386546	22	2.0	22	90	4	68	0	11	16	71	1.14
36391391--36391612	27	8.3	27	88	3	270	44	20	16	19	1.87
36391391--36391612	80	2.8	80	86	2	311	44	20	16	19	1.87
36394990--36395019	6	5.0	6	100	0	60	50	33	0	16	1.46
36403316--36403403	44	2.0	45	84	2	115	30	15	14	38	1.88
36403430--36403515	45	1.9	45	88	4	129	27	19	11	40	1.86
36403430--36403541	45	2.5	45	81	8	113	26	18	11	42	1.85
36408355--36408405	20	2.5	20	80	0	57	39	13	29	17	1.88
36432575--36433071	50	9.8	50	87	1	654	22	30	20	26	1.98
36435437--36435470	16	2.1	17	94	5	61	38	11	17	32	1.86
36440713--36440751	14	2.8	14	84	0	51	35	20	25	17	1.95
36448016--36448074	30	2.0	30	89	0	91	33	10	13	42	1.78
36465207--36465626	43	9.9	41	78	7	236	41	20	15	22	1.89
36465240--36465346	40	2.6	41	82	7	119	38	24	14	23	1.91
36465232--36465433	83	2.4	83	83	3	235	40	21	14	24	1.90
36465167--36465600	85	5.1	85	78	5	306	43	20	14	22	1.87
36470767--36470846	38	2.2	37	86	6	110	35	18	23	22	1.96
36472699--36472730	15	2.1	15	94	0	55	12	9	12	65	1.47
36474948--36475096	37	4.0	37	79	5	140	34	17	16	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36474948--36475123	74	2.4	74	80	3	183	34	18	16	30	1.93
36474976--36475133	37	4.2	37	82	4	147	35	18	16	29	1.93
36476549--36476798	39	6.4	39	84	0	313	15	32	18	33	1.93
36476549--36476798	117	2.1	117	87	0	365	15	32	18	33	1.93
36478166--36478195	15	2.0	15	93	0	51	26	30	20	23	1.98
36488384--36488463	27	3.0	27	83	0	88	23	27	13	35	1.93
36488706--36488791	45	1.9	45	95	0	154	22	23	15	39	1.91
36492502--36492613	61	1.9	58	87	5	161	50	2	4	42	1.36
36492588--36492641	20	2.9	18	80	20	67	55	3	1	38	1.28
36494243--36494325	35	2.4	35	83	4	96	32	20	21	25	1.98
36498676--36498730	15	3.9	15	69	13	53	52	5	16	25	1.65
36499209--36499239	5	6.2	5	92	0	53	41	16	22	19	1.89
36499856--36499912	19	3.2	17	78	14	62	49	0	26	24	1.51
36499856--36499912	16	3.2	18	73	26	59	49	0	26	24	1.51
36500263--36500299	9	4.1	9	92	0	65	29	10	13	45	1.77
36503605--36503658	15	3.3	15	74	18	54	44	0	1	53	1.11
36525188--36525287	28	3.6	28	90	0	155	31	27	12	30	1.92
36531748--36531790	18	2.4	17	81	11	50	58	2	0	39	1.11
36531745--36531778	5	6.8	5	90	9	52	64	0	0	35	0.94
36533786--36533908	61	2.0	60	81	4	140	36	6	14	42	1.72
36535973--36536024	27	2.0	27	85	7	72	38	5	1	53	1.36
36535973--36536031	27	2.1	28	81	9	68	37	5	1	55	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36536502--36536808	108	2.9	107	92	2	474	27	15	19	37	1.92
36537280--36537313	15	2.3	15	94	0	59	64	0	2	32	1.08
36550706--36550935	40	5.8	40	82	6	250	16	27	18	37	1.92
36550706--36550975	80	3.4	79	80	5	294	17	27	17	37	1.93
36550839--36550935	20	4.8	20	69	8	63	13	26	20	39	1.90
36550712--36550975	120	2.2	121	84	2	345	17	28	17	36	1.93
36550712--36550975	40	6.6	39	79	9	205	17	28	17	36	1.93
36550919--36550975	20	2.8	20	71	7	53	21	24	17	36	1.94
36556757--36556948	38	5.1	38	80	3	199	39	31	17	11	1.86
36556802--36556946	75	1.9	76	88	4	222	37	31	17	13	1.88
36560629--36560697	20	3.5	20	71	15	70	17	28	17	36	1.93
36560636--36560900	40	6.7	40	82	0	298	19	29	16	34	1.94
36560645--36560710	20	3.3	20	72	8	71	13	34	18	33	1.90
36560636--36560900	119	2.2	120	82	0	325	19	29	16	34	1.94
36560632--36560937	159	1.9	159	84	2	409	20	28	15	35	1.93
36567657--36567702	24	2.0	23	83	12	58	41	8	17	32	1.80
36569439--36569543	41	2.6	41	90	0	165	23	28	21	25	1.99
36570012--36570050	19	1.9	19	85	10	51	35	20	5	38	1.75
36574336--36574386	16	3.2	16	82	0	66	27	27	3	41	1.73
36574461--36574498	17	2.3	17	86	4	51	65	0	5	28	1.14
36575335--36575469	34	3.9	33	78	11	146	40	0	14	45	1.44
36575574--36575824	125	2.0	126	85	2	335	39	16	15	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36581607--36581643	9	4.1	9	92	0	65	45	13	10	29	1.77
36581692--36581752	30	2.0	31	90	3	97	19	40	0	39	1.52
36588745--36589017	136	2.0	136	100	0	546	31	20	14	33	1.93
36595244--36595321	41	1.9	41	89	0	120	37	14	17	30	1.90
36595243--36595331	41	2.1	41	81	2	106	40	13	15	30	1.86
36598184--36598280	51	1.9	50	95	2	176	25	11	19	43	1.84
36612183--36612214	11	2.9	11	100	0	64	18	18	9	53	1.71
36626208--36626329	56	2.1	58	87	3	176	45	5	18	30	1.72
36627637--36627680	18	2.5	17	81	3	52	52	0	0	47	1.00
36631974--36632011	20	2.0	21	85	15	55	18	15	13	52	1.74
36632084--36632108	12	2.1	12	100	0	50	16	8	44	32	1.76
36634290--36634347	13	4.5	13	78	6	55	46	6	1	44	1.40
36634303--36634337	9	3.9	9	88	0	52	51	2	0	45	1.16
36634328--36634360	17	1.9	17	88	11	50	42	15	0	42	1.46
36637011--36637243	42	5.6	42	85	0	306	30	20	20	29	1.98
36637011--36637243	84	2.8	84	91	0	360	30	20	20	29	1.98
36637011--36637242	126	1.8	125	87	0	347	29	20	20	29	1.98
36645027--36645275	42	5.9	42	84	1	320	30	20	19	29	1.97
36645002--36645276	84	3.3	84	88	2	394	31	20	19	29	1.97
36651235--36651283	16	3.1	16	90	0	80	36	18	10	34	1.85
36652304--36652361	5	11.6	5	100	0	116	60	0	39	0	0.97
36660790--36660916	27	4.7	27	82	5	116	25	18	24	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36660829--36660973	54	2.8	54	85	4	190	26	21	23	28	1.99
36660820--36660971	27	5.8	27	78	6	159	25	20	25	28	1.99
36664420--36664504	28	3.1	27	80	6	91	41	10	20	28	1.85
36667233--36667335	50	2.1	50	90	0	161	30	8	29	32	1.87
36669990--36670046	28	2.0	28	86	0	78	38	15	19	26	1.92
36671409--36671501	28	3.4	27	71	4	87	27	13	31	26	1.94
36671397--36671511	28	4.1	28	71	7	83	33	12	27	26	1.92
36674437--36674474	16	2.6	14	81	18	51	73	2	0	23	0.95
36674442--36674499	15	3.7	15	75	11	55	65	1	1	31	1.13
36680299--36680360	26	2.4	26	81	13	74	35	25	11	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185