genome.fa.s17.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  154  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47495922--47496129	107	1.9	108	97	0	391	49	5	1	43	1.36
47496019--47496064	16	2.9	16	78	12	51	52	2	0	45	1.13
47496019--47496073	15	3.7	15	79	13	53	52	1	0	45	1.11
47495953--47496122	37	4.7	35	67	20	100	48	6	1	43	1.39
47495943--47496168	107	2.1	107	88	5	336	50	5	2	42	1.37
47496135--47496211	29	2.9	27	73	11	68	53	0	2	44	1.14
47496222--47496472	91	2.8	91	96	0	457	47	2	3	46	1.33
47495922--47496329	221	1.8	226	83	9	559	48	4	2	44	1.37
47497958--47497990	16	2.0	17	88	5	50	48	0	27	24	1.51
47502044--47502084	20	2.0	20	90	0	64	46	2	17	34	1.61
47502953--47503156	40	5.1	40	81	0	237	41	25	18	15	1.89
47511955--47511994	19	2.0	20	85	4	55	45	5	7	42	1.54
47514101--47514172	26	2.7	27	84	6	92	63	5	4	26	1.34
47514379--47514449	26	2.6	27	84	4	81	63	7	2	26	1.34
47515202--47515293	43	2.1	43	83	0	112	6	17	18	57	1.60
47515870--47515911	22	2.0	22	85	4	59	54	23	4	16	1.61
47523087--47523298	106	2.0	106	93	0	361	48	20	10	20	1.79
47531260--47531399	75	1.9	74	82	5	174	47	19	2	30	1.64
47531658--47531711	12	4.2	12	77	13	63	46	9	1	42	1.46
47532166--47532197	15	2.1	15	100	0	64	46	0	6	46	1.27
47536093--47536172	30	2.7	30	82	1	99	38	20	16	25	1.92
47539891--47539965	6	12.5	6	86	0	87	17	25	1	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47539891--47539965	18	4.2	18	89	0	96	17	25	1	56	1.49
47539890--47539961	24	3.0	24	93	0	126	16	23	1	58	1.46
47551311--47551367	21	2.7	21	75	8	62	17	31	29	21	1.96
47551472--47551519	21	2.3	21	85	0	69	14	35	25	25	1.94
47554766--47554793	3	9.3	3	100	0	56	67	0	32	0	0.91
47569157--47569314	51	3.0	51	82	8	183	32	18	22	26	1.97
47569154--47569339	53	3.5	52	80	9	207	30	18	24	25	1.98
47572580--47572640	28	2.1	29	85	11	81	26	8	0	65	1.20
47572593--47572664	14	4.8	15	70	21	53	25	9	0	65	1.23
47577669--47577699	9	3.4	9	90	0	53	25	12	22	38	1.90
47577983--47578042	30	2.0	31	86	3	86	20	40	0	40	1.52
47583262--47583308	20	2.3	20	89	7	69	23	21	25	29	1.99
47584972--47585030	25	2.4	24	78	15	66	32	1	6	59	1.34
47584974--47585030	26	2.1	25	84	12	69	33	1	7	57	1.36
47585149--47585198	20	2.5	20	87	6	66	26	30	26	18	1.98
47590934--47590971	20	1.9	20	88	0	58	28	7	13	50	1.69
47590919--47590985	34	1.9	35	84	3	91	32	7	11	47	1.68
47593511--47593587	31	2.6	30	81	6	93	20	12	12	53	1.72
47596823--47596857	18	1.9	18	94	0	61	48	2	0	48	1.16
47600554--47600593	14	2.9	14	84	0	53	32	7	17	42	1.77
47600577--47600616	20	2.0	20	90	0	62	27	10	12	50	1.72
47600880--47600979	49	2.0	49	100	0	200	32	18	6	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47603504--47603534	16	1.9	16	100	0	62	51	6	16	25	1.68
47603953--47604005	24	2.2	24	96	0	97	33	3	49	13	1.60
47610133--47610223	31	2.8	32	90	5	139	70	10	9	8	1.35
47610136--47610236	31	3.2	31	82	10	123	69	9	10	9	1.38
47611139--47611172	13	2.5	14	90	4	52	70	0	14	14	1.17
47612407--47612702	87	3.4	87	86	0	403	28	24	22	23	1.99
47612551--47612689	44	3.2	44	68	8	120	22	24	27	25	2.00
47612970--47613109	44	3.1	44	72	4	136	30	20	22	27	1.98
47618058--47618098	17	2.5	17	88	4	57	73	0	17	9	1.09
47622270--47622311	18	2.2	19	87	8	59	35	4	11	47	1.61
47622948--47622997	19	2.7	19	81	3	66	30	4	2	64	1.23
47622947--47623036	27	3.3	27	74	14	78	35	2	2	60	1.22
47623566--47623610	22	2.1	21	91	4	72	11	17	26	44	1.82
47623681--47623885	42	4.8	43	84	5	256	27	32	18	22	1.97
47624158--47624248	43	2.1	43	87	2	130	43	9	10	35	1.73
47629074--47629276	41	5.0	41	93	0	334	28	29	23	19	1.98
47629330--47629462	40	3.3	41	79	7	141	24	22	20	32	1.98
47634542--47634577	2	18.0	2	88	0	54	2	52	0	44	1.15
47647554--47647584	16	1.9	16	93	0	53	19	12	6	61	1.53
47650321--47650354	16	2.2	15	94	5	59	23	2	0	73	0.97
47652134--47652261	60	2.2	60	92	1	213	42	15	21	20	1.89
47653823--47654014	95	2.0	95	92	2	323	29	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47679888--47679921	10	3.4	10	91	0	50	52	0	5	41	1.25
47680433--47680476	20	2.2	20	88	8	63	29	2	0	68	1.02
47680433--47680488	20	2.8	21	81	5	62	26	3	3	66	1.25
47680544--47680619	40	1.9	40	88	0	116	26	28	13	31	1.93
47696453--47696501	15	3.0	15	73	21	53	46	0	2	51	1.12
47696463--47696506	19	2.4	19	84	3	54	50	0	2	47	1.13
47696534--47696575	13	2.9	14	80	13	50	45	2	0	52	1.13
47697950--47698009	17	3.3	18	74	9	50	66	3	0	30	1.07
47700104--47700474	125	3.0	125	93	0	627	29	15	22	32	1.95
47703564--47703631	17	3.8	17	71	16	57	48	1	5	44	1.36
47703450--47703693	116	2.1	116	94	1	427	44	6	9	39	1.64
47703719--47704600	68	13.0	67	77	12	637	26	0	25	48	1.54
47703696--47704600	91	10.0	91	82	9	966	26	0	25	48	1.54
47703688--47704596	23	40.2	23	77	13	811	26	0	24	48	1.53
47704639--47704686	25	1.9	25	100	0	96	39	10	0	50	1.37
47705016--47705051	18	2.0	18	88	0	54	38	11	27	22	1.88
47705694--47705718	7	3.6	7	100	0	50	60	12	0	28	1.32
47705889--47705926	20	1.9	20	84	10	51	55	7	2	34	1.43
47706817--47706859	11	3.8	11	78	6	50	60	0	0	39	0.97
47706865--47706906	11	3.8	11	87	0	57	47	7	26	19	1.74
47706861--47706904	22	2.0	21	91	4	70	43	6	31	18	1.76
47711427--47711458	15	2.1	15	94	0	55	68	0	25	6	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47711890--47711943	20	2.8	20	82	2	74	59	5	1	33	1.31
47731925--47731949	10	2.5	10	100	0	50	64	8	0	28	1.22
47732185--47732253	20	3.5	20	80	7	77	43	5	8	42	1.59
47732169--47732254	40	2.2	40	86	0	118	41	4	9	44	1.57
47732851--47732884	16	2.1	16	88	0	50	50	14	17	17	1.79
47737617--47737650	16	2.1	16	88	0	50	50	14	17	17	1.79
47739013--47739068	29	1.9	29	85	7	78	53	8	0	37	1.32
47740791--47740829	18	2.1	19	86	13	55	28	17	12	41	1.87
47748258--47748302	2	22.5	2	100	0	90	0	48	0	51	1.00
47752176--47752222	18	2.8	18	84	9	64	31	4	4	59	1.36
47752183--47752223	18	2.3	18	95	0	73	21	4	4	68	1.28
47760464--47760510	25	2.0	23	87	8	67	40	0	2	57	1.11
47778013--47778047	16	2.1	17	89	5	54	42	11	0	45	1.40
47780930--47781029	49	2.0	49	94	0	173	39	33	9	19	1.83
47780930--47781005	25	3.1	25	64	17	68	38	35	10	15	1.82
47786096--47786127	11	2.9	11	95	0	55	40	12	9	37	1.75
47788931--47789034	43	2.4	43	85	6	131	32	27	16	23	1.96
47790230--47790261	16	1.9	17	93	6	57	81	3	15	0	0.82
47791005--47791083	3	25.7	3	73	5	59	36	6	1	55	1.33
47791016--47791084	24	3.0	23	81	8	77	39	7	1	52	1.38
47795976--47796028	6	8.5	6	83	8	52	73	0	20	5	1.03
47795976--47796028	26	2.1	25	89	3	79	73	0	20	5	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47795982--47796023	19	2.2	20	87	12	61	76	0	19	4	0.96
47795976--47796028	13	4.2	12	83	9	61	73	0	20	5	1.03
47796373--47796417	22	2.1	22	87	4	65	75	4	13	6	1.15
47798251--47798387	43	3.2	43	62	20	104	29	24	20	24	1.99
47797672--47798522	87	9.8	87	91	0	1308	30	22	22	24	1.99
47798768--47798862	44	2.2	44	80	3	102	30	21	23	25	1.99
47799813--47799845	16	2.0	17	94	5	59	78	0	15	6	0.93
47800564--47800629	3	21.7	3	75	3	51	37	6	1	54	1.34
47821639--47821667	6	4.8	6	100	0	58	68	0	31	0	0.89
47822951--47822994	11	4.1	11	85	5	54	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185