genome.fa.s17.2.7.7.80.10.50.1000.182.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  182  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55483863--55484054	89	2.1	89	79	10	205	39	3	21	34	1.71
55485762--55485794	16	2.1	16	94	0	57	33	6	36	24	1.80
55485774--55485863	45	2.0	44	87	6	128	31	5	28	34	1.80
55486146--55486188	16	2.6	17	85	7	54	60	0	0	39	0.97
55486246--55486297	15	3.6	15	80	12	56	53	1	0	44	1.11
55486011--55486423	120	3.5	119	93	1	693	50	5	2	41	1.39
55486463--55486523	28	2.2	28	85	5	81	50	3	0	45	1.17
55486470--55486613	47	3.1	46	65	23	113	49	4	2	44	1.33
55486438--55486650	91	2.3	91	95	0	372	46	4	3	46	1.40
55486488--55486627	47	3.0	47	67	17	139	48	4	2	44	1.37
55495362--55495421	26	2.2	29	85	8	81	31	5	1	61	1.27
55499120--55499190	29	2.3	30	80	9	81	42	19	19	18	1.90
55499699--55499755	29	2.0	29	82	6	71	24	10	8	56	1.61
55504177--55504738	89	6.3	89	92	0	836	25	23	19	30	1.98
55508428--55508487	26	2.2	29	85	8	81	31	5	1	61	1.27
55511940--55511996	29	2.0	29	82	6	71	24	10	8	56	1.61
55537688--55537713	12	2.2	12	100	0	52	57	0	0	42	0.98
55538734--55538764	12	2.7	12	95	5	55	70	6	0	22	1.09
55539558--55539595	16	2.3	17	86	4	51	10	7	10	71	1.32
55540426--55540878	223	2.0	223	99	0	897	34	12	16	35	1.87
55548183--55548222	19	2.1	19	86	9	55	65	0	2	32	1.06
55549609--55549657	22	2.2	22	85	7	64	30	6	8	55	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55555811--55556038	124	1.8	124	97	0	429	44	11	24	19	1.84
55556747--55556802	21	2.5	22	72	18	62	41	1	8	48	1.45
55562094--55562168	31	2.4	31	88	0	114	28	12	12	48	1.76
55565695--55565761	31	2.2	30	79	10	73	32	10	10	46	1.72
55568275--55568327	18	2.9	18	80	2	61	41	45	1	11	1.51
55568431--55568531	9	11.2	9	86	0	139	24	9	24	40	1.86
55568710--55568807	27	3.5	28	78	10	83	26	12	10	51	1.71
55569676--55569722	22	2.2	21	85	11	60	46	0	0	53	1.00
55572228--55572253	5	5.2	5	100	0	52	76	0	0	23	0.78
55580399--55580438	20	2.0	21	90	5	64	50	0	2	47	1.14
55593496--55593536	20	2.0	22	85	9	59	48	0	0	51	1.00
55593496--55593545	20	2.5	20	83	6	57	50	0	0	50	1.00
55603122--55603159	21	1.9	20	89	10	60	73	2	0	23	0.95
55609474--55609528	26	2.2	25	83	9	67	72	9	1	16	1.18
55610053--55610088	18	2.0	18	88	0	54	0	16	2	80	0.83
55610812--55610867	23	2.4	23	77	11	60	26	1	5	66	1.23
55616505--55616551	24	2.0	24	83	4	60	65	4	12	17	1.40
55618506--55618595	23	4.1	23	69	11	89	46	5	25	22	1.73
55618525--55618605	42	1.9	42	94	0	144	46	6	22	24	1.74
55620470--55620534	28	2.3	29	82	7	73	58	6	1	33	1.32
55621077--55621110	16	2.1	16	88	0	50	50	14	17	17	1.79
55623910--55623950	21	2.0	21	90	0	64	29	21	29	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55625856--55625889	16	2.1	16	88	0	50	50	14	17	17	1.79
55628593--55628650	30	1.9	30	86	10	82	44	13	10	31	1.78
55631687--55631760	36	2.1	36	94	0	130	21	17	18	41	1.90
55631782--55631821	21	1.9	21	89	0	62	60	7	5	27	1.45
55638169--55638244	25	3.1	25	80	14	104	31	18	7	42	1.79
55638158--55638233	23	3.2	22	80	14	89	28	15	9	46	1.77
55648502--55648544	21	2.0	21	90	0	68	20	30	20	27	1.98
55653630--55653715	42	2.0	44	88	4	131	54	10	1	33	1.42
55654724--55654787	22	2.8	23	86	6	85	20	1	46	31	1.60
55654701--55654791	15	6.1	15	69	16	55	19	1	43	35	1.59
55655154--55655195	19	2.2	19	91	0	66	80	2	2	14	0.90
55659541--55659615	23	3.3	23	94	0	123	33	26	21	18	1.96
55661920--55661969	21	2.4	21	89	0	73	36	16	44	4	1.66
55662119--55662159	20	2.0	20	85	4	55	26	2	0	70	0.99
55662322--55662547	43	5.3	43	83	1	256	29	19	27	23	1.98
55662641--55662684	22	2.0	22	86	0	61	47	27	15	9	1.76
55665310--55665361	26	2.0	26	96	0	95	53	5	15	25	1.63
55669268--55669295	13	2.2	13	100	0	56	32	0	7	60	1.24
55670009--55670215	110	1.9	110	89	1	326	28	15	20	34	1.94
55671345--55671488	42	3.4	41	78	10	139	25	18	25	31	1.97
55675551--55675597	19	2.3	20	89	7	69	65	8	0	25	1.20
55675551--55675597	21	2.3	21	89	7	71	65	8	0	25	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55679081--55679163	38	2.2	38	95	2	150	51	6	19	22	1.68
55680932--55680960	15	1.9	15	100	0	58	20	10	41	27	1.85
55684614--55684729	42	2.7	42	82	4	117	27	18	25	28	1.98
55684636--55684729	42	2.2	43	84	1	127	25	19	24	30	1.98
55684674--55684819	75	1.9	75	88	4	222	23	18	20	36	1.94
55687670--55687701	16	2.0	16	93	0	55	40	12	15	31	1.85
55688842--55688888	19	2.3	20	89	7	69	65	8	0	25	1.20
55688842--55688888	21	2.3	21	89	7	71	65	8	0	25	1.20
55690627--55690672	17	2.8	18	84	15	64	28	41	30	0	1.56
55692858--55692959	18	5.3	18	73	16	71	29	5	2	61	1.34
55692858--55692913	15	3.7	15	80	4	60	30	3	0	66	1.09
55693114--55693180	34	2.0	34	81	0	80	34	1	1	62	1.13
55693133--55693180	21	2.3	20	86	13	71	35	2	0	62	1.07
55693101--55693172	19	4.0	19	71	14	62	36	4	1	58	1.26
55693133--55693186	21	2.7	22	83	13	55	38	1	0	59	1.08
55693139--55693201	21	2.9	21	81	9	56	39	1	1	57	1.18
55693448--55693485	19	2.0	19	85	10	51	21	5	7	65	1.38
55713821--55713886	32	2.2	30	83	8	80	54	7	15	22	1.66
55713910--55713968	28	2.1	29	93	3	102	25	13	15	45	1.82
55714371--55714403	17	1.9	17	100	0	66	48	0	9	42	1.35
55734914--55734950	19	1.9	19	100	0	74	43	16	2	37	1.62
55737316--55737365	17	2.7	20	78	18	70	10	0	44	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55741955--55742004	17	2.7	20	78	18	70	10	0	44	46	1.37
55743023--55743228	72	2.9	72	88	0	295	45	11	11	32	1.76
55743935--55743974	20	2.0	20	85	0	53	47	0	0	52	1.00
55744054--55744135	40	2.0	40	92	0	137	45	7	1	46	1.39
55750331--55750376	18	2.6	18	85	0	65	47	8	17	26	1.76
55752354--55752397	18	2.4	18	85	11	54	20	0	9	70	1.14
55754268--55754301	17	2.0	17	94	0	59	44	50	0	5	1.26
55758906--55758939	17	2.0	17	94	0	59	44	50	0	5	1.26
55764218--55764375	73	2.2	73	97	0	298	35	20	12	31	1.90
55767731--55767771	21	2.0	21	90	0	64	19	29	21	29	1.98
55775140--55775269	43	3.0	42	82	10	174	22	19	28	30	1.98
55781454--55781522	33	2.1	33	86	5	95	40	4	7	47	1.51
55781490--55781515	13	2.0	13	100	0	52	38	0	7	53	1.30
55781709--55782230	206	2.6	198	81	9	621	50	6	7	36	1.56
55783884--55783909	13	2.0	13	100	0	52	23	23	23	30	1.99
55788063--55788121	25	2.3	24	83	11	57	59	6	6	27	1.48
55788392--55788439	14	3.2	14	74	25	53	0	18	10	70	1.15
55788813--55788858	18	2.8	18	84	15	64	0	30	41	28	1.56
55790632--55790674	13	3.1	14	84	12	54	60	0	0	39	0.97
55793151--55793197	3	15.3	3	86	4	67	61	0	4	34	1.15
55798282--55798326	21	2.3	20	85	14	60	66	6	0	26	1.16
55800589--55800622	17	2.0	17	94	0	59	44	50	0	5	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55805228--55805261	17	2.0	17	94	0	59	44	50	0	5	1.26
55808159--55808215	27	2.2	26	81	9	62	43	3	8	43	1.52
55812264--55812304	21	2.0	21	90	0	64	19	29	21	29	1.98
55820223--55820289	29	2.3	29	81	0	89	52	11	14	20	1.74
55821953--55822000	19	2.4	19	86	6	60	62	8	2	27	1.35
55828517--55828541	12	2.1	12	100	0	50	8	44	0	48	1.32
55829884--55829922	18	2.2	18	85	0	51	10	5	12	71	1.28
55838270--55838715	114	3.9	114	87	2	635	26	22	25	25	2.00
55843156--55843370	75	2.9	75	92	0	358	29	19	15	35	1.93
55851599--55851632	17	2.0	17	94	0	59	44	50	0	5	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185