genome.fa.s17.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  121  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37901868--37901985	23	5.1	23	79	2	112	33	23	18	24	1.97
37901868--37901985	46	2.6	46	83	2	130	33	23	18	24	1.97
37908685--37908871	51	3.7	50	81	5	225	31	27	17	24	1.97
37908683--37908867	101	1.8	101	90	3	300	31	27	17	24	1.97
37910384--37910444	32	1.9	32	100	0	122	45	11	8	34	1.70
37910951--37911046	41	2.3	41	90	0	156	26	14	20	38	1.91
37911667--37911837	84	2.0	84	100	0	342	28	10	22	38	1.87
37912584--37912609	13	2.0	13	100	0	52	84	0	7	7	0.77
37913498--37913732	116	2.0	116	99	0	461	41	12	19	26	1.87
37914828--37914921	47	2.0	47	97	0	179	42	18	8	30	1.80
37916733--37916761	7	4.1	7	100	0	58	41	31	0	27	1.56
37916845--37916893	14	3.4	14	77	5	53	26	4	2	67	1.19
37918184--37918229	5	9.2	5	100	0	92	60	0	0	39	0.97
37922751--37922806	25	2.3	24	79	11	69	44	0	3	51	1.18
37922756--37922803	25	1.9	25	87	8	71	37	0	4	58	1.18
37924830--37924867	5	7.6	5	91	8	60	81	2	0	15	0.80
37925764--37925806	13	3.5	13	75	18	56	46	16	2	34	1.60
37925764--37925838	23	3.3	23	88	0	105	48	12	2	37	1.55
37925839--37925874	18	2.0	18	88	0	54	58	2	2	36	1.27
37926427--37926462	6	6.0	6	87	12	56	13	0	2	83	0.76
37930874--37930919	24	1.9	24	86	0	65	47	8	4	39	1.54
37931171--37931233	32	2.0	32	90	0	99	44	11	12	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37932891--37933062	45	3.8	45	83	8	179	42	36	2	18	1.65
37932896--37933052	48	3.4	46	83	8	185	43	35	3	18	1.66
37932896--37933054	23	6.9	22	78	14	153	42	35	3	18	1.66
37941725--37941777	8	6.1	8	79	16	61	81	0	0	18	0.70
37941719--37941773	28	2.0	28	100	0	110	74	0	0	25	0.82
37941722--37941781	28	2.1	28	90	6	95	73	0	0	26	0.84
37944884--37944976	36	2.6	36	89	1	134	25	11	15	47	1.79
37946356--37946394	13	3.0	13	84	0	51	51	0	0	48	1.00
37946298--37946485	103	1.8	103	95	0	340	38	7	13	39	1.75
37948253--37948293	19	2.1	19	86	4	55	58	2	0	39	1.11
37950535--37950575	20	2.0	20	100	0	82	19	19	31	29	1.96
37962733--37962832	20	5.1	20	67	24	68	40	20	26	14	1.90
37965351--37965400	18	2.8	18	93	0	82	34	20	14	32	1.92
37965686--37965752	30	2.3	30	82	12	77	47	4	1	46	1.31
37965773--37965810	19	2.0	20	84	5	51	50	5	0	44	1.24
37966920--37966984	27	2.5	26	74	2	67	41	9	1	47	1.45
37970179--37970209	7	4.3	7	92	8	53	41	0	0	58	0.98
37970177--37970215	15	2.6	16	84	8	55	38	0	0	61	0.96
37974345--37974522	27	6.6	27	84	3	196	29	28	15	26	1.96
37974366--37974521	82	1.9	81	86	3	224	28	28	16	26	1.97
37978374--37978915	89	6.1	88	85	2	649	30	17	24	28	1.97
37978462--37979231	133	5.8	133	72	7	504	31	17	24	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37978878--37979262	90	4.3	89	80	6	388	31	17	23	28	1.97
37978437--37979155	44	16.2	44	70	9	374	30	17	24	27	1.97
37978453--37978990	266	2.0	266	80	4	602	30	18	24	27	1.98
37978878--37979276	89	4.5	90	81	3	434	31	16	23	28	1.96
37980928--37980966	14	2.8	14	80	0	51	33	2	7	56	1.41
37982708--37982758	21	2.3	23	87	9	72	35	3	3	56	1.36
37982955--37982994	21	1.9	21	84	0	53	35	10	2	52	1.48
37984771--37984795	11	2.3	11	100	0	50	72	0	8	20	1.10
37985022--37985105	29	2.9	31	81	11	81	59	2	17	20	1.48
37986279--37986313	15	2.2	16	90	5	54	8	5	28	57	1.52
37986626--37986733	50	2.2	48	85	8	139	32	20	13	33	1.92
37986719--37987048	44	7.1	43	68	22	161	28	20	17	32	1.96
37986639--37987014	50	8.0	49	72	18	235	30	19	16	33	1.94
37987191--37987339	44	3.2	44	72	17	131	28	22	16	32	1.96
37986708--37987397	94	7.4	94	85	2	803	28	20	18	32	1.96
37987231--37987446	94	2.3	94	79	1	218	31	19	16	32	1.94
38006102--38006128	12	2.2	12	100	0	54	22	11	14	51	1.73
38015547--38015680	56	2.5	53	83	9	150	24	21	31	22	1.98
38015597--38015700	50	2.1	50	85	7	140	28	22	31	17	1.96
38015606--38015718	50	2.3	50	81	3	120	30	22	28	18	1.97
38015991--38016039	20	2.5	20	78	15	57	55	6	26	12	1.60
38019394--38019579	40	4.7	40	86	5	225	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38021519--38021556	19	2.0	19	90	10	60	21	39	0	39	1.53
38025521--38025555	16	2.2	16	89	0	52	17	20	5	57	1.60
38027267--38027341	20	3.8	20	89	0	105	24	30	0	45	1.53
38027281--38027313	15	2.1	16	88	5	50	21	27	0	51	1.48
38029602--38029685	29	2.9	28	75	5	78	33	27	4	34	1.78
38033614--38033663	25	2.0	25	96	0	91	50	12	18	20	1.78
38038508--38038554	11	4.3	11	86	0	67	21	34	2	42	1.65
38038512--38038570	22	2.7	23	82	10	61	27	27	1	44	1.64
38039719--38039744	7	3.7	7	100	0	52	26	0	15	57	1.38
38040675--38040721	21	2.2	21	88	7	69	34	31	23	10	1.89
38040982--38041064	22	3.2	27	81	18	122	42	36	0	21	1.53
38040981--38041030	15	3.5	15	69	20	52	44	34	0	22	1.53
38044157--38044474	126	2.5	125	90	0	501	28	22	17	30	1.97
38044567--38044609	21	2.0	22	86	4	61	51	34	0	13	1.42
38050037--38050061	10	2.5	10	100	0	50	92	0	8	0	0.40
38052556--38052644	25	3.5	25	85	8	110	17	25	25	30	1.98
38052573--38052657	27	3.2	26	88	6	111	18	27	27	27	1.98
38052598--38052670	27	2.7	26	89	4	83	17	23	28	30	1.97
38059678--38059757	24	3.3	24	72	10	74	17	28	21	32	1.96
38064528--38064792	35	7.4	34	69	15	108	22	23	22	32	1.98
38064528--38064681	35	4.3	35	75	13	125	24	21	22	32	1.98
38064544--38064723	75	2.4	74	83	1	225	22	22	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38069154--38069238	27	3.1	27	81	1	98	23	23	11	41	1.87
38074024--38074048	11	2.3	11	100	0	50	56	0	16	28	1.41
38074689--38074917	27	8.5	27	83	7	243	19	17	18	44	1.88
38074689--38074918	81	2.8	81	83	6	286	19	17	18	44	1.87
38084920--38084988	27	2.7	26	84	8	79	27	23	24	24	2.00
38085190--38085239	26	1.9	26	91	0	82	34	12	18	36	1.87
38092788--38092904	43	2.7	43	87	0	171	23	29	16	30	1.96
38093059--38093172	31	3.7	31	89	2	167	43	16	9	29	1.80
38093027--38093168	62	2.3	62	84	3	180	44	16	9	28	1.80
38096146--38096252	31	3.5	31	77	2	99	44	3	22	28	1.70
38096153--38096244	30	3.0	30	79	3	103	43	3	23	29	1.70
38098682--38098714	15	2.2	15	94	0	57	15	15	0	69	1.19
38100991--38101042	25	2.1	25	85	0	68	25	23	19	32	1.97
38102198--38102250	20	2.7	20	81	0	61	33	13	9	43	1.76
38103879--38103925	14	3.5	13	83	11	51	40	2	4	53	1.32
38108736--38108761	3	8.7	3	100	0	52	65	0	0	34	0.93
38109309--38109341	6	5.5	6	100	0	66	18	33	15	33	1.92
38110956--38111002	23	2.0	23	84	8	60	25	31	8	34	1.86
38112715--38112739	7	3.6	7	100	0	50	36	0	0	64	0.94
38120955--38120993	17	2.2	18	86	4	53	33	0	7	58	1.26
38122120--38122317	40	4.9	40	81	1	209	15	31	16	36	1.90
38122121--38122264	20	7.2	20	69	6	103	13	29	16	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38122167--38122362	20	9.8	20	68	11	87	14	30	17	36	1.91
38122247--38122355	40	2.7	39	79	9	105	14	33	18	33	1.91
38130256--38130300	10	4.5	10	83	8	56	64	8	0	26	1.23
38130256--38130318	20	3.2	19	82	10	65	66	6	0	26	1.15
38130561--38130619	10	6.2	10	76	9	61	71	1	1	25	1.05
38130524--38130617	28	3.4	28	74	12	86	69	1	4	25	1.13
38130524--38130598	19	4.1	18	72	16	64	69	1	4	25	1.14
38130944--38130980	17	2.1	18	90	5	58	32	5	0	62	1.18
38131009--38131058	18	2.9	17	77	16	50	32	2	2	64	1.16
38131010--38131170	19	8.3	19	68	17	73	31	3	2	62	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185