genome.fa.s17.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  103  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32578522--32578562	18	2.3	18	95	0	73	29	9	19	41	1.83
32578548--32578619	33	2.2	33	92	0	117	26	13	18	41	1.87
32578785--32578934	63	2.4	63	85	2	203	25	20	23	31	1.98
32584560--32584610	24	2.2	24	82	3	59	50	5	7	35	1.55
32588123--32588305	60	3.1	60	76	6	176	26	15	25	32	1.95
32600970--32601197	27	8.6	27	84	6	173	28	27	14	28	1.95
32601088--32601161	23	3.0	23	85	14	112	27	25	12	35	1.91
32611542--32611599	20	2.9	20	65	0	53	12	32	20	34	1.90
32611539--32611627	40	2.2	39	86	7	117	13	31	23	31	1.93
32611611--32611658	20	2.5	20	80	10	55	14	29	20	35	1.93
32612720--32612761	18	2.3	18	80	8	50	40	4	9	45	1.58
32617242--32617271	12	2.5	12	94	0	51	23	40	30	6	1.80
32620283--32620337	24	2.3	24	80	0	74	29	23	3	43	1.71
32622017--32622195	50	3.6	50	84	3	216	21	28	22	27	1.99
32624158--32624219	27	2.2	28	94	2	108	38	38	14	8	1.76
32625874--32625914	20	2.0	21	85	9	57	29	21	4	43	1.73
32625982--32626171	51	3.7	51	77	4	170	31	27	15	26	1.96
32631651--32632580	47	19.6	47	92	2	1518	33	8	28	29	1.87
32631651--32632580	143	6.5	141	92	1	1518	33	8	28	29	1.87
32631651--32632580	190	4.9	189	91	2	1517	33	8	28	29	1.87
32632699--32632800	37	2.8	37	93	0	168	25	18	29	26	1.98
32638335--32638521	50	3.7	51	80	5	193	30	27	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32643399--32643434	18	1.9	19	94	5	65	8	27	2	61	1.39
32648014--32648256	51	4.8	50	81	3	281	25	17	26	29	1.98
32648014--32648287	101	2.7	101	85	4	347	27	16	26	29	1.97
32652289--32652504	45	4.8	45	88	0	290	34	26	12	25	1.92
32653753--32653881	57	2.2	58	77	10	131	39	6	3	51	1.43
32653779--32653902	58	2.2	57	81	10	137	39	5	4	50	1.45
32656016--32656091	38	2.0	39	92	2	127	36	22	15	25	1.93
32668898--32669025	50	2.6	49	78	1	130	28	22	27	21	1.99
32668909--32669090	49	3.7	49	77	3	143	29	21	25	23	1.99
32677040--32677073	16	2.1	16	88	5	50	8	0	14	76	1.01
32686008--32686064	28	2.0	28	96	0	105	35	14	22	28	1.93
32689853--32689910	19	2.7	22	84	10	68	36	8	17	37	1.80
32690116--32690160	23	2.0	23	86	0	63	22	0	11	66	1.22
32690438--32690518	36	2.2	37	78	14	87	38	8	2	50	1.46
32697912--32698265	40	8.9	40	96	0	627	24	30	20	24	1.99
32706631--32706929	40	7.8	39	84	12	383	24	29	20	25	1.99
32709823--32710062	44	5.7	44	79	12	288	25	17	27	28	1.98
32709901--32710058	78	2.0	78	89	7	241	24	18	28	29	1.98
32709981--32710097	44	2.7	44	81	5	121	27	18	25	28	1.98
32709857--32710080	122	1.8	122	86	5	328	25	18	25	29	1.98
32710231--32710498	50	5.4	50	69	5	173	30	20	21	27	1.98
32710236--32710533	100	3.0	99	84	3	366	29	20	21	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32714941--32714974	14	2.4	14	95	0	59	41	11	11	35	1.78
32715768--32715794	4	6.8	4	100	0	54	22	0	0	77	0.76
32716410--32716448	3	13.0	3	100	0	78	33	0	0	66	0.92
32719078--32719151	36	2.0	36	87	7	105	36	8	22	32	1.84
32722193--32722239	19	2.4	19	92	3	76	46	2	8	42	1.46
32725754--32725784	16	1.9	16	93	0	53	32	25	12	29	1.93
32735837--32735884	19	2.5	19	75	0	51	14	25	29	31	1.95
32738290--32738438	27	5.6	27	79	6	142	30	21	13	34	1.92
32738276--32738438	54	3.0	53	77	5	175	29	21	13	35	1.92
32742630--32742809	50	3.5	50	82	4	189	22	28	22	26	1.99
32750244--32750482	50	4.7	50	79	4	192	25	30	19	25	1.98
32756955--32757166	27	7.8	27	79	4	192	29	8	20	41	1.80
32756939--32757211	55	5.0	55	79	5	239	29	8	20	41	1.82
32756939--32757211	82	3.3	83	85	3	311	29	8	20	41	1.82
32756939--32757218	28	10.2	28	78	8	227	29	8	20	40	1.83
32759182--32759241	20	2.9	21	82	5	86	11	28	20	40	1.87
32759182--32759243	21	3.0	21	83	4	90	11	27	20	40	1.87
32764689--32764850	30	5.5	29	75	6	137	38	10	24	26	1.87
32764714--32764881	89	1.9	90	85	3	232	39	10	23	27	1.86
32772310--32772336	10	2.7	10	100	0	54	14	0	29	55	1.40
32772550--32772680	55	2.4	54	84	6	165	28	23	20	27	1.99
32775330--32775387	21	2.6	21	71	17	55	31	20	6	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32787086--32787124	18	2.2	17	86	13	53	33	0	20	46	1.51
32787353--32787471	23	5.2	23	85	4	159	21	17	26	33	1.96
32787350--32787464	46	2.5	46	92	0	194	21	18	26	33	1.96
32796045--32796243	50	3.9	50	79	8	197	26	21	29	23	1.99
32802147--32802215	35	2.0	35	85	5	95	18	18	27	34	1.95
32804945--32804977	9	3.3	10	91	8	50	27	0	0	72	0.85
32805172--32805209	17	2.2	17	95	0	67	44	21	13	21	1.85
32813501--32813526	13	2.0	13	100	0	52	46	15	7	30	1.74
32819098--32819132	10	3.2	11	88	12	54	17	37	0	45	1.48
32820326--32820350	7	3.6	7	100	0	50	28	0	12	60	1.32
32821567--32822404	29	31.4	28	75	18	657	44	26	0	28	1.56
32821751--32822424	23	26.5	23	70	24	327	44	26	0	28	1.56
32821551--32822372	51	15.6	51	74	19	512	44	26	0	28	1.56
32821844--32821885	22	2.0	21	95	4	75	42	28	0	28	1.56
32822082--32822123	22	2.0	21	95	4	75	42	28	0	28	1.56
32822054--32822433	51	7.6	49	81	12	411	45	25	0	28	1.56
32822436--32822641	110	1.9	110	97	0	394	38	9	8	42	1.69
32822617--32822658	17	2.4	18	80	4	50	42	9	2	45	1.49
32825673--32826018	126	2.8	125	87	3	500	32	22	16	28	1.95
32827298--32827399	46	2.3	44	94	3	177	68	0	11	18	1.25
32827406--32827439	17	1.9	18	88	5	52	73	2	2	20	1.09
32830522--32830664	75	1.9	75	88	2	216	38	23	16	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32831151--32831188	11	3.5	11	89	7	51	21	10	0	68	1.19
32832740--32833082	51	6.8	51	75	9	292	29	15	25	30	1.96
32832740--32833082	102	3.4	101	80	8	362	29	15	25	30	1.96
32832933--32833075	50	2.9	50	92	2	225	30	16	23	30	1.96
32842456--32842495	21	2.0	21	85	5	55	15	32	7	45	1.74
32851254--32851298	22	2.0	22	100	0	90	31	26	0	42	1.56
32852586--32852962	125	3.0	125	92	1	623	29	15	23	32	1.95
32853846--32854489	23	28.8	23	86	5	876	26	0	25	47	1.54
32853846--32854489	90	7.2	91	86	5	845	26	0	25	47	1.54
32853836--32854489	67	9.7	67	90	3	946	26	0	25	47	1.55
32854972--32855011	18	2.2	18	95	0	71	40	7	30	22	1.81
32855662--32855686	7	3.6	7	100	0	50	60	12	0	28	1.32
32855857--32855894	20	1.9	20	84	10	51	55	7	2	34	1.43
32856898--32856937	11	3.6	11	93	6	64	42	0	35	22	1.54
32861635--32861730	48	2.0	48	85	0	129	28	26	26	19	1.99
32864666--32864798	55	2.4	54	83	7	142	48	0	2	49	1.13
32864965--32865034	16	4.4	16	80	5	79	34	24	2	38	1.70
32864965--32865035	32	2.2	32	85	5	90	33	23	4	38	1.75
32865588--32865636	4	12.0	4	91	4	71	71	0	4	24	1.03
32865589--32865636	21	2.3	21	85	3	71	72	0	4	22	1.01
32867221--32867253	17	2.0	17	94	5	59	30	15	0	54	1.41
32876642--32876709	27	2.5	27	80	0	82	35	19	11	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32880613--32880642	6	5.2	6	96	4	53	83	0	16	0	0.65
32880587--32880644	27	2.1	28	83	3	73	74	1	17	6	1.12
32880636--32880709	33	2.2	34	88	7	107	56	5	27	10	1.55
32880653--32880711	16	3.5	17	72	19	52	55	8	25	10	1.61
32888513--32888600	25	3.5	25	82	0	86	29	21	21	27	1.99
32889034--32889076	22	2.0	22	86	4	61	20	11	25	41	1.86
32895977--32896025	23	2.1	23	85	7	64	36	4	22	36	1.73
32919331--32919366	18	1.9	19	88	5	56	41	0	19	38	1.52
32921753--32921791	8	4.9	8	84	9	53	10	10	0	79	0.94
32921760--32921793	17	1.9	18	94	5	61	8	14	0	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185