genome.fa.s17.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  149  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46042071--46042189	41	2.9	41	88	3	170	26	19	23	30	1.98
46043626--46043675	17	2.9	17	93	0	91	44	6	26	24	1.76
46049213--46049251	20	2.0	20	90	10	62	51	30	5	12	1.62
46050338--46050462	25	5.0	25	77	0	142	27	16	23	32	1.96
46050339--46050491	50	3.1	50	89	0	243	27	17	24	30	1.97
46050351--46050491	25	5.6	25	78	0	138	26	18	24	30	1.98
46050985--46051022	20	1.9	20	94	0	67	23	7	0	68	1.16
46066883--46066918	16	2.3	16	90	4	56	33	2	5	58	1.36
46069604--46069637	17	2.0	17	94	0	59	38	2	11	47	1.55
46080389--46080436	23	2.1	23	84	7	62	4	37	2	56	1.30
46082267--46082298	15	2.1	15	94	0	55	46	12	21	18	1.82
46085393--46085446	24	2.2	24	86	0	72	27	16	31	24	1.96
46085613--46085646	15	2.4	14	90	5	50	26	2	0	70	1.01
46094209--46094253	19	2.3	20	88	3	65	24	35	0	40	1.56
46096303--46096334	12	2.6	12	95	5	55	65	3	6	25	1.31
46097695--46097747	23	2.4	22	76	20	56	9	18	1	69	1.25
46100113--46100144	12	2.6	12	95	5	55	65	3	6	25	1.31
46103375--46103407	16	1.9	17	88	11	50	39	0	30	30	1.57
46103779--46103833	9	6.1	9	91	0	92	29	10	14	45	1.79
46103885--46103915	9	3.4	9	95	0	53	35	22	12	29	1.91
46109770--46109834	33	2.0	33	96	0	121	44	12	7	35	1.71
46113351--46113387	18	2.0	19	89	5	58	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46113418--46113592	62	3.1	54	68	26	148	51	2	9	36	1.49
46113519--46113562	22	2.0	23	86	4	63	56	0	6	36	1.26
46113524--46113576	22	2.4	23	72	18	58	56	0	7	35	1.28
46113418--46113636	106	2.0	109	87	8	322	52	3	9	35	1.49
46113433--46113659	106	2.1	111	83	9	288	53	3	9	33	1.51
46114385--46114411	14	1.9	14	100	0	54	88	0	3	7	0.61
46114684--46114714	15	2.1	15	93	0	53	19	19	29	32	1.96
46122255--46122302	3	16.0	3	100	0	96	33	33	0	33	1.58
46125504--46125555	23	2.3	23	90	3	79	76	5	0	17	0.97
46125506--46125555	11	4.5	11	77	5	55	78	6	0	16	0.95
46125766--46126425	156	4.3	154	86	5	897	51	6	10	31	1.63
46126549--46126593	19	2.4	19	81	11	56	17	0	6	75	1.01
46127861--46128139	123	2.3	123	94	1	488	30	14	21	33	1.93
46131285--46131992	30	23.8	30	86	10	949	29	0	24	46	1.54
46131277--46131992	59	12.0	60	83	9	814	29	0	24	46	1.54
46131622--46131734	23	4.4	23	72	23	100	29	0	22	48	1.51
46131756--46131918	29	5.1	36	76	23	168	27	0	26	46	1.54
46131799--46131941	23	5.4	23	71	27	106	29	0	23	46	1.52
46131874--46131971	23	3.9	23	78	18	97	30	0	21	47	1.51
46134380--46134438	30	2.0	30	96	0	109	35	0	32	32	1.58
46135820--46135860	7	5.9	7	94	0	73	43	39	0	17	1.49
46150114--46150213	40	2.6	39	78	12	100	23	3	11	63	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46152950--46153058	34	3.2	34	84	1	121	17	26	13	42	1.87
46153183--46153279	51	1.9	49	83	8	124	20	25	12	41	1.87
46161944--46161995	25	2.1	25	100	0	104	42	3	7	46	1.51
46176770--46176958	50	3.8	49	79	8	193	60	4	6	27	1.42
46176770--46177184	26	15.8	26	67	19	157	59	3	7	28	1.43
46176893--46177053	31	5.6	29	69	20	97	60	3	6	29	1.37
46176913--46177053	60	2.4	58	78	11	142	61	2	6	29	1.35
46177007--46177170	27	6.4	25	68	16	70	59	1	9	29	1.38
46177104--46177144	15	2.8	16	82	10	52	70	2	0	26	0.99
46177931--46177969	21	1.9	21	94	5	71	74	5	12	7	1.20
46177979--46178024	19	2.2	21	85	11	60	23	6	13	56	1.60
46183229--46183267	18	2.2	17	86	13	53	33	0	20	46	1.51
46183493--46183590	23	4.3	23	90	2	162	20	21	26	31	1.98
46183495--46183583	45	2.0	45	95	0	160	19	22	26	31	1.97
46199052--46199097	16	3.0	16	81	9	60	43	10	4	41	1.59
46204884--46204918	16	2.2	16	90	5	54	40	8	17	34	1.80
46224324--46224356	14	2.5	14	90	9	52	66	0	15	18	1.25
46225624--46226088	44	10.2	43	69	15	231	32	19	21	26	1.97
46225677--46225857	98	1.8	97	82	6	231	34	20	18	26	1.96
46225819--46225999	98	1.8	98	81	4	222	33	19	20	27	1.96
46225633--46226055	142	3.0	142	94	0	729	33	19	21	26	1.97
46232261--46232396	67	2.0	67	97	0	254	33	14	23	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46233252--46233323	31	2.4	31	84	13	96	43	12	11	33	1.78
46234937--46234961	2	12.5	2	100	0	50	48	0	0	52	1.00
46234977--46235022	18	2.6	18	89	0	65	43	8	8	39	1.66
46235573--46235610	9	4.2	9	80	12	51	65	0	2	31	1.06
46249248--46249290	19	2.3	19	80	11	54	44	16	2	37	1.60
46250440--46250486	21	2.2	22	85	7	62	63	6	0	29	1.19
46250448--46250487	21	1.9	21	90	10	64	65	2	0	32	1.06
46251583--46251629	14	3.3	15	72	22	55	78	12	0	8	0.95
46252941--46252978	19	2.0	20	85	14	55	23	7	2	65	1.32
46252980--46253020	15	2.7	16	81	11	50	21	9	2	65	1.34
46253155--46253179	12	2.1	12	100	0	50	24	8	0	68	1.16
46264443--46264495	17	3.2	17	78	2	54	32	5	1	60	1.31
46264442--46264508	28	2.4	28	82	9	75	29	7	1	61	1.32
46264472--46264507	12	2.9	12	88	8	54	33	8	0	58	1.28
46264445--46264524	22	3.6	21	70	14	63	32	6	2	58	1.36
46271898--46272280	50	7.7	50	72	7	312	34	24	17	24	1.96
46271872--46272330	50	9.2	50	69	7	288	33	23	18	24	1.97
46271872--46272307	100	4.4	100	91	0	701	33	23	19	23	1.97
46273783--46273835	17	3.2	17	78	2	54	32	5	1	60	1.31
46273782--46273848	28	2.4	28	82	9	75	29	7	1	61	1.32
46273812--46273847	12	2.9	12	88	8	54	33	8	0	58	1.28
46273785--46273864	22	3.6	21	70	14	63	32	6	2	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46277187--46277231	23	2.0	23	90	0	72	31	33	6	28	1.83
46277210--46277463	44	5.6	44	73	10	192	29	21	20	27	1.98
46277263--46277439	94	1.9	94	80	9	209	31	20	20	27	1.98
46277215--46277469	138	1.8	138	82	0	330	29	20	21	28	1.98
46277624--46277669	13	3.3	14	72	22	51	78	8	0	13	0.97
46277624--46277668	14	3.3	13	76	11	54	77	8	0	13	0.98
46277624--46277675	15	3.5	15	71	12	54	75	11	0	13	1.06
46279021--46279061	15	2.7	16	81	11	50	21	9	2	65	1.34
46279200--46279224	12	2.1	12	100	0	50	24	8	0	68	1.16
46279957--46279996	17	2.4	16	87	4	53	12	10	5	72	1.26
46279957--46280019	16	3.9	16	85	6	65	12	6	6	74	1.20
46279977--46280021	15	2.9	15	86	3	54	11	4	4	80	1.01
46280939--46281003	3	21.7	3	100	0	130	33	0	0	66	0.92
46283375--46283474	19	5.3	19	71	7	78	33	25	22	20	1.97
46283380--46283474	38	2.5	38	77	3	102	33	25	21	20	1.97
46293681--46293847	9	18.1	9	66	22	53	29	4	1	63	1.25
46293799--46293847	18	2.7	18	87	3	62	32	0	0	67	0.91
46300577--46300610	14	2.5	14	95	4	61	14	0	35	50	1.44
46301103--46301197	29	3.2	29	77	15	90	46	2	2	49	1.25
46301233--46301260	14	2.0	14	100	0	56	50	7	14	28	1.69
46301837--46301893	23	2.5	23	94	0	96	70	7	10	12	1.34
46305802--46306371	84	6.6	87	70	15	305	28	22	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46305802--46306376	44	13.3	44	72	12	340	28	22	20	28	1.99
46305807--46306375	217	2.6	217	91	0	935	27	22	20	28	1.99
46322294--46322389	7	13.4	7	76	8	86	45	33	1	19	1.58
46322294--46322338	8	6.1	8	80	17	53	46	37	0	15	1.46
46322294--46322390	29	3.4	29	75	13	85	46	32	1	19	1.57
46330418--46330470	20	2.7	19	78	18	56	37	0	28	33	1.58
46335704--46335909	72	2.9	71	78	7	211	36	18	22	22	1.95
46336464--46336499	14	2.7	13	95	4	63	13	0	0	86	0.58
46351426--46351544	45	2.6	46	86	4	159	39	21	25	14	1.90
46351426--46351552	48	2.8	45	86	3	164	37	21	25	14	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185