genome.fa.s17.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: D04
Parameters: 2 7 7 80 10 50 1000
Length:  56598092

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   

This is table  166  of  185  ( 22116 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50786956--50787953	132	7.6	132	89	1	1428	27	24	18	29	1.98
50788455--50788479	12	2.1	12	100	0	50	36	8	32	24	1.84
50790900--50790959	6	10.0	6	75	0	57	58	5	5	31	1.41
50790900--50790959	9	6.7	9	80	0	57	58	5	5	31	1.41
50790892--50790959	18	3.8	18	80	1	66	60	4	4	30	1.36
50790921--50790967	9	5.2	9	84	0	58	55	4	6	34	1.45
50791043--50791069	4	6.8	4	100	0	54	77	0	0	22	0.76
50795031--50795105	34	2.2	34	83	4	89	36	13	13	37	1.84
50795238--50795346	45	2.4	45	84	1	128	24	20	22	33	1.97
50796398--50796440	19	2.3	18	80	7	50	34	0	6	58	1.25
50800117--50800143	3	9.0	3	100	0	54	0	33	0	66	0.92
50802312--50802443	45	3.0	44	77	11	108	41	14	18	25	1.88
50804744--50804769	13	2.0	13	100	0	52	46	0	46	7	1.31
50810431--50810497	27	2.5	27	85	4	91	23	26	29	19	1.98
50810726--50810778	3	17.7	3	92	0	88	32	0	3	64	1.12
50813664--50813757	37	2.7	35	78	15	95	1	29	1	68	1.04
50813725--50813782	28	2.1	28	90	6	91	0	25	0	74	0.82
50813657--50813780	24	5.0	25	72	12	87	0	29	0	69	1.00
50813695--50813791	24	3.9	24	75	15	90	1	27	1	70	1.01
50813689--50813785	10	10.1	10	70	25	52	1	26	1	71	0.99
50813689--50813790	14	6.9	14	71	22	68	0	27	0	70	1.00
50813750--50813806	24	2.3	24	79	11	62	0	36	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50815184--50815247	10	6.5	10	72	15	53	60	0	3	35	1.12
50815187--50815216	8	3.6	8	91	8	51	73	0	0	26	0.84
50815124--50815448	162	2.0	161	99	0	641	44	5	9	40	1.60
50815346--50815409	10	6.5	10	72	15	53	60	0	3	35	1.12
50815349--50815378	8	3.6	8	91	8	51	73	0	0	26	0.84
50815719--50815757	20	2.0	20	90	10	62	53	2	0	43	1.14
50817411--50817437	7	3.9	7	100	0	54	25	0	44	29	1.54
50818578--50818629	23	2.3	23	82	0	68	50	0	3	46	1.20
50824448--50824600	48	3.3	47	93	3	265	32	7	30	30	1.84
50824533--50824665	67	2.0	68	93	1	232	34	6	29	29	1.83
50824485--50824717	115	2.0	118	92	3	393	33	7	30	29	1.84
50824600--50825098	47	10.5	47	88	3	719	32	8	30	29	1.87
50824454--50825041	162	3.9	154	88	7	733	32	7	29	29	1.86
50824600--50825083	96	5.1	96	93	1	787	31	8	30	29	1.87
50825216--50825294	37	2.1	37	90	0	122	24	18	31	25	1.98
50828119--50828763	262	2.5	261	84	1	835	31	16	12	39	1.86
50828119--50828766	131	5.0	131	82	2	755	31	16	12	39	1.86
50840080--50840123	23	1.9	23	85	0	61	47	4	6	40	1.50
50849803--50849895	40	2.3	40	87	7	127	37	23	22	16	1.93
50851311--50851906	292	2.0	294	79	5	634	25	16	21	36	1.94
50853234--50853264	13	2.4	13	94	0	53	51	0	0	48	1.00
50861113--50861152	15	2.6	16	84	11	57	22	17	0	60	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50861112--50861305	53	3.6	54	88	6	286	24	19	4	52	1.63
50874990--50875214	50	4.3	52	75	6	152	30	27	19	23	1.98
50874990--50875229	105	2.3	104	83	5	306	30	25	17	26	1.98
50874990--50875218	51	4.4	50	71	10	147	31	26	18	22	1.97
50875994--50876042	9	5.4	9	85	0	71	28	12	20	38	1.89
50875992--50876042	18	2.8	18	93	0	93	31	11	19	37	1.88
50876335--50876394	30	2.0	31	86	3	86	20	40	0	40	1.52
50878134--50878345	40	5.3	40	80	5	250	24	20	27	27	1.99
50878138--50878345	80	2.6	80	89	0	310	23	21	27	27	1.99
50888998--50890299	615	2.1	619	86	3	1827	35	14	16	33	1.89
50890540--50890607	20	3.3	20	74	10	66	17	23	4	54	1.61
50891075--50891123	20	2.5	20	82	0	53	46	6	4	42	1.47
50894340--50894391	24	2.2	24	89	0	77	55	9	1	32	1.43
50897174--50897226	26	2.0	26	85	7	72	64	0	0	35	0.94
50897498--50897549	24	2.2	24	79	3	61	40	3	11	44	1.59
50897504--50897548	24	1.9	23	86	4	63	40	4	13	42	1.64
50900626--50900681	15	3.8	15	83	4	69	30	17	1	50	1.57
50901661--50901685	8	3.1	8	100	0	50	48	0	0	52	1.00
50907886--50908053	22	7.4	22	66	12	70	42	19	13	25	1.87
50907768--50908057	69	4.2	69	87	0	391	42	19	11	26	1.85
50907841--50908041	24	8.6	23	67	10	95	43	19	9	27	1.82
50908647--50908844	41	4.8	41	89	0	279	32	27	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50915257--50915547	23	12.6	23	67	11	101	42	18	10	28	1.83
50915289--50915546	24	11.1	24	67	12	83	44	18	10	26	1.82
50915287--50915563	69	4.0	69	89	0	401	44	19	10	25	1.83
50916371--50916568	41	4.8	41	90	0	288	31	27	20	19	1.97
50920192--50920339	57	2.5	59	82	9	176	29	20	27	22	1.98
50927244--50927334	41	2.2	41	90	0	137	29	19	23	27	1.98
50928959--50929700	88	8.4	88	90	0	1119	28	20	24	26	1.99
50933924--50933967	19	2.1	22	88	12	67	50	2	0	47	1.13
50933952--50934007	12	4.8	12	77	14	55	48	0	1	50	1.11
50933913--50934012	27	3.7	27	69	19	82	49	1	1	49	1.14
50934269--50934317	25	2.0	25	100	0	98	53	4	38	4	1.39
50934428--50934471	13	3.5	13	81	6	54	22	0	11	65	1.24
50934541--50934748	40	5.3	40	69	17	134	34	4	11	50	1.59
50934541--50934752	76	2.7	77	76	10	216	33	4	11	50	1.59
50934848--50934875	14	2.0	14	100	0	56	42	7	0	50	1.30
50938604--50938790	51	3.7	49	80	7	214	25	17	26	31	1.97
50938714--50938794	26	3.2	26	64	28	64	24	14	27	33	1.95
50938796--50938890	45	2.1	45	88	0	145	27	17	23	31	1.97
50938931--50938977	23	2.0	22	84	15	60	38	0	25	36	1.56
50943251--50944583	156	8.6	156	90	4	1996	29	10	7	52	1.64
50944728--50944782	26	2.1	27	82	3	67	56	9	3	30	1.48
50944889--50945017	5	26.4	5	69	12	63	0	32	0	66	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50944878--50945019	10	14.1	10	71	9	83	0	31	0	67	0.96
50944844--50944976	62	2.1	62	98	0	257	0	33	0	66	0.98
50944844--50944995	62	2.4	62	93	3	234	1	33	0	65	1.01
50945011--50945035	13	1.9	13	100	0	50	0	36	0	64	0.94
50953732--50953822	38	2.4	38	81	0	101	16	39	24	19	1.92
50959751--50959811	25	2.4	25	76	15	72	26	26	16	31	1.96
50960216--50960254	16	2.4	16	95	0	69	17	12	41	28	1.87
50964140--50964227	37	2.4	37	86	0	131	29	11	20	38	1.87
50965106--50965157	24	2.2	24	89	0	77	40	15	0	44	1.46
50965112--50965162	24	2.1	24	96	0	93	39	17	0	43	1.49
50966316--50966347	14	2.2	15	94	5	57	12	12	0	75	1.06
50967136--50967170	18	2.0	17	88	5	52	22	0	11	65	1.24
50974988--50975018	11	2.8	11	100	0	62	19	9	12	58	1.62
50979700--50980114	87	4.8	87	81	0	499	33	22	20	23	1.97
50979700--50980114	174	2.4	173	88	2	616	33	22	20	23	1.97
50980658--50980691	14	2.5	14	95	4	61	5	14	2	76	1.09
50981493--50981528	18	2.0	18	89	10	56	22	0	11	66	1.22
50984355--50984392	20	1.9	20	88	0	58	26	34	26	13	1.93
50986456--50986495	21	1.9	21	94	0	71	25	10	12	52	1.70
50992117--50992144	13	2.2	13	100	0	56	60	7	17	14	1.55
50991266--50993074	618	2.9	615	86	5	2486	34	15	16	33	1.90
50993317--50993385	20	3.4	20	84	6	86	23	17	4	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50993846--50993876	9	3.4	9	90	0	53	70	0	0	29	0.87
50993875--50993918	20	2.2	20	88	4	63	38	6	2	52	1.41
50993913--50993962	20	2.5	19	75	18	57	46	10	10	34	1.71
50996014--50996054	21	2.0	21	81	18	50	21	26	19	31	1.97
51014536--51014584	25	2.0	25	84	8	64	55	4	4	36	1.38
51018498--51018529	16	2.0	16	93	0	55	59	0	0	40	0.97
51022844--51022870	5	5.4	5	100	0	54	44	55	0	0	0.99
51026999--51027049	27	1.9	26	88	11	77	58	0	31	9	1.30
51029393--51029463	18	4.2	17	72	13	51	60	1	2	35	1.20
51029549--51029573	3	8.3	3	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185