genome.fa.s157.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  10  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1609222--1609281	32	1.9	31	86	3	84	65	1	0	33	1.03
1609347--1609384	20	1.9	20	94	0	67	28	44	10	15	1.80
1610235--1610281	18	2.7	17	78	15	51	21	0	6	72	1.07
1610695--1610796	15	6.6	16	72	15	63	48	27	0	23	1.58
1610751--1610824	39	1.9	38	94	2	130	48	29	0	21	1.50
1610767--1610820	24	2.2	24	86	0	72	46	31	0	22	1.52
1613203--1613267	28	2.3	27	84	7	85	46	0	1	52	1.10
1613206--1613275	29	2.3	29	82	7	86	44	0	2	52	1.15
1613215--1613282	28	2.4	29	76	13	72	47	0	1	51	1.09
1613600--1613643	19	2.4	19	88	3	63	38	0	0	61	0.96
1613584--1613647	21	3.1	20	78	10	67	40	0	0	59	0.97
1614400--1614439	21	1.9	21	89	0	62	57	5	0	37	1.21
1615817--1615849	12	2.8	12	86	4	50	6	0	9	84	0.76
1615801--1615851	18	2.7	18	76	14	50	7	3	9	78	1.07
1630939--1630976	2	19.0	2	100	0	76	50	0	0	50	1.00
1635382--1635439	30	2.0	30	83	10	75	41	1	0	56	1.09
1635783--1635827	23	2.0	23	95	0	81	37	4	20	37	1.73
1636307--1636349	17	2.6	17	85	7	54	48	6	2	41	1.43
1637333--1637379	19	2.4	19	75	10	51	40	0	4	55	1.19
1657375--1657419	19	2.4	19	100	0	90	24	28	4	42	1.74
1659534--1659565	2	16.0	2	93	0	55	53	0	0	46	1.00
1662032--1662084	23	2.3	23	93	0	97	60	3	5	30	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662564--1662598	12	2.8	13	95	4	63	28	0	0	71	0.86
1666217--1666256	18	2.2	19	86	4	55	35	2	2	60	1.24
1666334--1666535	82	2.5	80	80	9	194	53	8	0	36	1.38
1666465--1666598	62	2.2	63	84	2	173	52	5	1	39	1.35
1677158--1677199	16	2.6	16	89	10	68	52	0	0	47	1.00
1677305--1677347	17	2.6	17	82	10	54	48	4	2	44	1.36
1679817--1679966	79	1.9	77	90	5	241	46	13	20	19	1.83
1681445--1681471	12	2.2	12	100	0	54	40	33	0	25	1.56
1684538--1684583	22	2.0	23	83	4	58	63	0	0	36	0.95
1686528--1686592	29	2.3	27	86	7	85	38	1	4	55	1.30
1686550--1686602	27	2.0	27	85	7	72	47	0	1	50	1.12
1693246--1693283	15	2.7	14	84	11	51	63	0	0	36	0.95
1693246--1693299	27	1.9	29	88	7	85	59	0	0	40	0.98
1693246--1693312	27	2.5	26	75	20	66	56	0	0	43	0.99
1696148--1696183	2	18.5	2	88	5	56	47	2	0	50	1.15
1712169--1712203	18	1.9	18	88	0	52	42	0	0	57	0.99
1712973--1713031	25	2.4	24	81	13	66	45	0	0	54	0.99
1712989--1713044	25	2.2	25	78	18	62	46	1	0	51	1.11
1712974--1713054	24	3.2	24	75	19	69	46	1	0	51	1.08
1714366--1714414	25	2.0	25	88	8	73	44	6	6	42	1.54
1717020--1717074	26	2.2	25	83	3	65	74	3	3	18	1.11
1725713--1725820	21	5.1	21	79	4	101	33	12	30	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1725728--1725820	42	2.2	42	86	0	123	33	12	29	24	1.93
1741532--1741676	15	9.7	15	76	0	128	21	16	24	37	1.94
1741532--1741672	30	4.7	30	89	1	203	21	17	24	36	1.94
1741669--1741764	15	6.4	15	70	2	68	14	25	23	36	1.93
1741680--1741772	30	3.1	30	96	0	168	13	24	27	33	1.94
1745303--1745331	15	1.9	15	100	0	58	27	6	24	41	1.80
1758352--1758396	2	22.5	2	100	0	90	0	48	0	51	1.00
1758396--1758432	2	18.5	2	100	0	74	48	0	0	51	1.00
1768523--1768559	2	18.5	2	100	0	74	51	0	0	48	1.00
1777268--1777315	7	6.3	7	84	15	60	43	0	0	56	0.99
1785338--1785378	21	2.0	21	85	0	55	36	7	4	51	1.51
1786292--1786336	23	2.0	24	82	8	58	62	0	0	37	0.96
1786304--1786354	20	2.6	19	81	9	57	54	0	0	45	0.99
1788233--1788263	2	15.5	2	100	0	62	48	0	0	51	1.00
1793926--1794263	166	2.0	166	94	0	606	29	18	17	33	1.94
1798896--1798930	2	17.5	2	100	0	70	51	48	0	0	1.00
1801672--1801713	14	2.9	15	78	3	50	50	0	2	47	1.14
1809062--1809090	14	2.0	15	93	6	51	6	24	13	55	1.63
1817830--1817864	17	2.1	17	89	10	54	60	0	28	11	1.32
1818354--1818419	29	2.2	30	84	7	82	54	1	1	42	1.18
1819987--1820047	20	3.1	20	70	9	54	52	0	0	47	1.00
1819967--1820016	24	2.0	26	88	7	77	46	0	0	54	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820552--1820601	17	2.9	16	82	11	55	56	2	6	36	1.36
1828652--1828682	12	2.6	12	94	0	53	29	12	38	19	1.89
1830558--1830618	13	5.0	12	80	11	70	63	0	1	34	1.04
1830566--1830626	24	2.6	24	84	2	88	63	0	3	32	1.10
1830573--1830633	15	4.1	14	79	12	52	63	0	1	34	1.04
1833924--1833955	15	2.1	15	100	0	64	28	40	18	12	1.87
1859562--1859599	16	2.3	17	90	4	60	28	0	0	71	0.87
1860450--1860499	24	2.1	24	100	0	100	44	12	0	44	1.41
1862441--1862587	61	2.4	60	79	3	161	32	8	9	48	1.66
1862445--1862595	60	2.5	61	79	3	162	33	9	7	49	1.64
1862614--1862787	56	3.0	57	76	13	192	35	8	5	51	1.55
1862721--1862758	16	2.3	17	86	13	53	36	0	7	55	1.29
1862604--1862786	63	3.0	60	80	10	221	36	7	5	50	1.54
1863931--1864070	41	3.4	42	86	5	187	47	21	10	21	1.80
1864255--1864289	15	2.2	16	90	5	54	40	17	14	28	1.88
1864347--1864863	114	4.5	114	90	2	797	34	15	14	35	1.88
1864830--1864939	58	1.9	58	84	3	150	34	18	11	35	1.87
1864942--1865077	46	3.0	46	85	0	191	36	12	11	39	1.79
1864922--1865078	21	7.0	22	74	13	115	36	12	10	40	1.79
1866267--1866317	12	4.6	11	80	20	54	7	9	0	82	0.85
1866289--1866356	33	2.0	34	85	5	93	8	22	0	69	1.16
1870113--1870145	15	2.3	15	89	5	50	33	0	6	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870118--1870318	60	3.3	59	79	10	226	35	7	5	50	1.55
1873441--1873476	16	2.3	16	90	4	56	80	2	5	11	0.98
1874132--1874161	15	2.0	15	93	0	51	70	10	13	6	1.34
1874467--1874527	26	2.4	25	75	10	61	24	0	3	72	1.00
1874968--1875008	21	2.0	21	85	9	57	48	29	0	21	1.50
1876808--1876847	20	1.9	21	85	10	55	17	7	2	72	1.19
1881508--1881555	12	4.2	11	81	7	60	87	2	4	6	0.73
1881519--1881555	16	2.3	16	90	9	58	89	0	5	5	0.60
1883212--1883308	41	2.4	41	89	6	144	32	18	18	29	1.95
1883367--1883646	150	1.9	150	84	4	377	32	16	15	36	1.90
1883472--1883794	131	2.5	128	81	5	362	32	15	15	36	1.89
1883839--1884050	110	1.9	110	86	0	298	19	21	20	38	1.93
1883965--1884139	88	2.0	88	87	0	251	21	20	18	40	1.92
1884041--1884248	110	1.9	110	90	0	335	23	23	16	37	1.94
1883843--1884443	198	3.0	195	83	5	629	23	20	17	38	1.93
1884167--1884334	88	1.9	88	83	0	219	22	20	16	41	1.90
1884145--1884348	88	2.3	88	76	2	214	24	19	15	40	1.90
1884320--1884371	22	2.3	23	90	6	88	30	15	15	38	1.88
1884239--1884670	110	3.9	109	79	4	395	25	21	15	37	1.92
1885063--1885101	19	2.0	20	85	5	53	74	2	15	7	1.15
1885395--1885424	14	2.2	13	94	5	51	76	13	6	3	1.11
1885735--1885764	15	2.0	15	93	0	51	70	10	13	6	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1886027--1886070	9	4.7	9	81	10	52	25	0	0	75	0.81
1890445--1890480	16	2.2	17	90	5	56	75	0	0	25	0.81
1899080--1899106	13	2.1	13	100	0	54	22	0	0	77	0.76
1900912--1901017	30	3.5	30	78	14	110	45	6	0	47	1.35
1903904--1903941	18	2.1	19	85	14	53	47	10	0	42	1.38
1917217--1917249	2	16.5	2	100	0	66	48	0	51	0	1.00
1920224--1920258	3	11.7	3	87	0	52	2	37	0	60	1.12
1927502--1927658	52	3.0	52	85	3	183	24	23	10	41	1.85
1927685--1927724	11	3.6	11	93	0	71	50	27	0	22	1.50
1927926--1928004	25	3.2	25	74	13	76	25	37	3	32	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84