genome.fa.s157.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  44  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10320169--10320298	62	2.1	62	92	2	217	34	20	16	28	1.94
10326281--10326323	2	21.5	2	85	0	59	48	0	4	46	1.22
10326801--10326831	16	1.9	16	93	0	53	64	0	0	35	0.94
10329225--10329325	27	3.9	27	71	14	72	63	0	5	29	1.25
10330336--10330364	1	29.0	1	100	0	58	0	0	0	100	0.00
10330353--10330487	65	2.1	65	88	1	198	23	5	15	55	1.60
10334034--10334077	10	4.6	9	78	15	52	22	2	4	70	1.17
10338210--10338240	14	2.2	14	94	0	53	51	0	3	45	1.17
10339523--10339562	20	2.0	21	85	14	57	10	5	27	57	1.52
10341056--10341204	55	2.7	54	82	6	158	54	12	5	28	1.59
10341172--10341232	20	2.8	22	78	14	72	59	13	3	24	1.49
10341117--10341310	52	3.7	53	75	6	153	56	9	4	29	1.50
10341142--10341240	22	4.6	21	74	10	85	56	11	4	28	1.52
10341142--10341240	43	2.3	43	82	5	130	56	11	4	28	1.52
10341211--10341292	32	2.6	29	83	11	74	54	8	6	30	1.55
10341227--10341283	20	2.8	20	70	5	51	52	10	7	29	1.62
10341269--10341334	20	3.1	20	74	10	60	56	9	3	31	1.46
10341243--10341305	32	2.0	32	93	0	108	55	9	4	30	1.52
10341289--10341424	24	5.6	24	76	14	136	56	10	2	30	1.45
10341291--10341429	46	2.9	45	77	17	129	56	10	2	31	1.45
10341361--10341429	21	3.1	21	81	10	75	56	11	1	30	1.44
10341409--10341486	32	2.5	31	79	10	79	50	15	7	26	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10342401--10342550	49	3.2	48	81	13	172	44	16	12	28	1.83
10342365--10342550	92	2.0	91	85	6	252	43	15	11	29	1.83
10342370--10342546	43	4.0	44	80	11	198	41	16	11	29	1.84
10349890--10350003	20	6.0	19	73	18	85	50	10	5	34	1.59
10350116--10350191	24	3.1	24	81	9	91	51	10	2	35	1.50
10350260--10350317	20	2.8	20	85	10	73	51	12	6	29	1.65
10350262--10350324	21	3.0	21	77	11	67	50	12	7	28	1.68
10350280--10350349	33	2.2	32	82	7	79	54	11	5	28	1.59
10350400--10350448	21	2.3	21	85	3	62	55	10	4	30	1.52
10350431--10350478	17	2.8	17	78	9	62	52	4	8	35	1.51
10358916--10358975	14	4.4	14	76	19	56	41	0	0	58	0.98
10358917--10358980	17	3.5	20	76	21	61	43	0	0	56	0.99
10358934--10358989	20	2.9	19	77	15	55	41	0	1	57	1.09
10358920--10358989	34	2.1	34	81	10	81	42	0	1	55	1.08
10359121--10359153	10	3.3	10	87	12	50	36	9	0	54	1.32
10364697--10364729	6	5.7	6	89	3	50	72	24	0	3	0.98
10364841--10364890	12	4.2	12	81	0	55	44	30	20	6	1.75
10364842--10364890	18	2.7	18	83	0	62	42	30	20	6	1.76
10373829--10373861	17	1.9	17	93	0	57	45	9	33	12	1.73
10374696--10374741	16	3.0	15	84	12	58	47	2	2	47	1.26
10375293--10375331	17	2.2	18	86	13	55	66	0	2	30	1.05
10376183--10376334	78	1.9	78	94	2	270	38	9	20	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10376891--10376997	52	2.1	52	96	3	198	27	19	14	38	1.91
10383714--10383755	13	3.2	13	80	9	50	2	21	0	76	0.90
10385564--10385599	18	2.0	18	94	0	63	47	5	19	27	1.72
10386434--10386463	2	15.0	2	100	0	60	50	0	0	50	1.00
10390477--10390509	2	16.0	2	93	6	57	48	3	0	48	1.17
10397475--10397504	2	15.0	2	100	0	60	50	0	0	50	1.00
10398998--10399024	2	13.5	2	100	0	54	51	0	0	48	1.00
10402371--10402456	6	13.2	6	69	24	50	50	0	1	48	1.08
10402569--10402629	26	2.5	23	77	15	68	55	0	0	44	0.99
10402690--10402766	16	4.9	16	76	14	72	49	0	0	50	1.00
10402712--10402771	22	2.8	22	82	5	79	50	0	0	50	1.00
10402701--10402768	6	12.3	6	77	17	60	48	0	0	51	1.00
10402811--10402836	13	2.0	13	100	0	52	30	15	23	30	1.95
10403126--10403165	3	13.3	3	89	0	62	2	0	62	35	1.09
10406854--10406905	13	3.9	13	76	19	54	69	3	0	26	1.06
10406854--10406908	18	2.8	18	81	13	56	69	3	0	27	1.05
10418603--10418645	20	2.2	20	95	0	77	32	4	20	41	1.73
10419343--10419381	13	3.1	12	89	10	60	79	0	5	15	0.90
10423673--10423888	108	2.0	108	97	0	405	37	20	9	32	1.85
10433001--10433052	18	2.9	16	78	18	50	75	7	5	11	1.19
10433327--10433378	27	1.9	27	88	0	77	73	21	3	1	1.10
10436136--10436209	30	2.4	30	78	10	78	32	5	8	54	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10440212--10440253	21	2.0	21	85	4	57	80	7	2	9	0.97
10440214--10440252	20	1.9	21	89	5	62	82	5	2	10	0.93
10440248--10440291	21	2.3	20	82	17	58	72	0	2	25	0.96
10440210--10440317	19	5.5	19	74	19	80	76	5	1	15	1.05
10440266--10440316	16	3.0	17	78	21	54	76	5	0	17	0.98
10440266--10440328	18	3.6	17	76	20	58	76	4	1	17	1.04
10440286--10440328	19	2.3	19	84	8	52	81	6	2	9	0.95
10440939--10440998	31	1.9	31	86	6	86	50	1	0	48	1.11
10440929--10440995	17	4.1	16	73	13	57	50	1	0	47	1.10
10441697--10441765	17	4.2	16	75	12	61	56	2	0	40	1.14
10441700--10441764	32	2.0	32	82	11	80	58	3	0	38	1.14
10441975--10442003	11	2.6	11	100	0	58	82	0	6	10	0.83
10443632--10443668	19	1.9	19	94	0	65	43	10	2	43	1.53
10443785--10443831	21	2.2	21	88	0	67	51	25	2	21	1.59
10448018--10448349	102	3.3	103	78	9	340	43	16	8	31	1.78
10459319--10459346	2	14.0	2	100	0	56	50	0	0	50	1.00
10470498--10470793	22	13.8	22	71	11	69	38	9	6	45	1.62
10470509--10470657	65	2.3	65	78	6	160	37	9	7	45	1.65
10470702--10470779	22	3.5	22	71	13	70	41	7	5	46	1.55
10470682--10470779	44	2.2	44	85	0	124	40	8	6	44	1.59
10470511--10470628	22	5.4	22	71	9	98	38	11	5	44	1.64
10473253--10473304	17	3.1	17	68	0	50	40	3	0	55	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10474555--10474583	13	2.3	13	94	5	51	51	3	0	44	1.18
10474788--10474823	3	12.0	3	100	0	72	66	0	0	33	0.92
10475006--10475046	21	2.0	21	85	0	55	34	2	14	48	1.57
10475397--10475522	44	2.8	45	74	9	123	36	7	8	46	1.64
10475479--10475625	22	6.6	22	73	6	84	39	6	8	45	1.60
10475594--10475650	30	1.9	30	85	7	80	43	8	1	45	1.45
10475624--10475784	44	3.6	45	77	6	150	38	7	3	50	1.48
10475624--10475767	22	6.5	22	77	6	103	38	8	4	48	1.53
10475479--10475769	140	2.1	140	80	7	315	39	7	6	47	1.57
10475954--10476077	22	5.6	22	73	12	101	40	8	3	48	1.49
10476045--10476093	22	2.2	22	92	0	80	34	6	6	53	1.51
10476365--10477039	22	31.0	22	69	9	159	37	9	6	46	1.62
10476461--10476554	43	2.2	44	81	9	104	38	7	9	44	1.65
10477260--10477356	22	4.4	23	77	13	80	37	13	4	45	1.63
10477260--10477364	44	2.4	44	84	7	117	37	12	4	45	1.63
10477272--10477437	22	7.7	21	74	7	93	37	10	5	45	1.62
10478734--10478784	23	2.2	24	82	10	61	56	7	1	33	1.39
10481039--10481112	24	3.2	22	72	14	60	45	2	4	47	1.35
10483063--10483102	19	2.1	19	100	0	80	32	15	30	22	1.94
10490294--10490337	18	2.4	18	84	0	61	9	11	4	75	1.19
10489855--10491453	720	2.2	705	81	5	1784	30	11	15	43	1.81
10493197--10493243	17	2.7	18	77	12	53	21	2	4	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10494033--10494103	3	23.3	3	94	2	124	30	1	1	66	1.09
10495657--10495708	24	2.2	24	93	6	88	26	7	17	48	1.74
10502101--10502528	59	7.2	59	83	4	538	36	14	6	42	1.72
10502101--10502528	120	3.6	118	91	3	680	36	14	6	42	1.72
10503847--10503916	22	3.2	22	82	6	81	38	5	8	47	1.58
10503843--10503936	43	2.2	44	81	9	104	38	7	9	44	1.65
10504082--10504406	22	14.9	22	70	7	115	37	9	4	48	1.56
10504084--10504196	44	2.6	44	80	5	131	36	7	2	53	1.45
10504643--10504739	22	4.4	23	77	13	80	37	13	4	45	1.63
10504643--10504747	44	2.4	44	84	7	117	37	12	4	45	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84