genome.fa.s157.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  30  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6926127--6926160	17	2.0	17	94	0	59	38	0	0	61	0.96
6927262--6927286	7	3.6	7	100	0	50	60	0	0	40	0.97
6930712--6930755	2	23.0	2	81	9	56	50	4	0	45	1.22
6940378--6940403	2	13.0	2	100	0	52	50	0	0	50	1.00
6948054--6948084	2	15.5	2	100	0	62	48	0	0	51	1.00
6960988--6961017	15	1.9	16	93	6	53	26	3	6	63	1.35
6962633--6962666	2	17.5	2	93	6	61	50	0	0	50	1.00
6965813--6965863	21	2.3	23	77	16	63	33	3	9	52	1.53
6965942--6966040	21	4.7	21	73	0	63	31	5	14	49	1.64
6966076--6966135	20	2.9	21	77	5	77	41	1	8	48	1.43
6966555--6966620	23	2.7	23	88	9	87	53	0	0	46	1.00
6966602--6966648	18	2.6	18	86	6	60	57	4	0	38	1.18
6967164--6967188	12	2.1	12	100	0	50	76	0	8	16	1.02
6970824--6970894	27	2.6	29	76	15	78	52	0	38	9	1.35
6984036--6984062	14	1.9	14	100	0	54	0	44	0	55	0.99
6984594--6984650	18	2.9	19	82	10	71	35	8	3	52	1.50
6984918--6984962	22	2.1	23	84	12	60	46	2	2	48	1.26
6989594--6989626	2	16.5	2	100	0	66	51	0	0	48	1.00
7007241--7007273	17	1.9	17	100	0	66	42	3	18	36	1.66
7007177--7007282	48	2.2	48	81	9	119	39	7	13	39	1.73
7009826--7009861	17	2.1	17	100	0	72	44	11	5	38	1.63
7018271--7018311	4	10.5	4	89	10	59	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7018271--7018311	21	1.9	22	95	5	75	26	0	0	73	0.84
7018271--7018319	17	2.8	16	79	14	53	24	0	2	73	0.94
7018750--7018851	53	1.9	53	85	0	141	53	4	10	30	1.56
7024154--7024203	21	2.4	21	93	0	82	50	10	4	36	1.55
7024226--7024364	21	6.7	21	68	18	67	51	10	3	33	1.54
7025552--7025599	25	2.0	25	84	12	64	58	4	0	37	1.18
7025581--7025611	16	1.9	16	93	0	53	64	0	0	35	0.94
7026344--7026383	21	1.9	21	84	0	53	40	0	30	30	1.57
7026941--7026965	13	1.9	13	100	0	50	56	0	0	44	0.99
7029345--7029402	29	2.0	29	100	0	116	58	31	6	3	1.41
7035574--7035629	25	2.1	26	83	12	69	10	10	8	69	1.37
7050820--7050859	2	20.0	2	94	0	71	47	0	2	50	1.14
7052380--7052437	20	2.8	20	77	17	64	55	0	0	44	0.99
7052383--7052446	22	3.0	22	77	11	69	56	0	0	43	0.99
7052383--7052437	22	2.5	23	82	11	71	54	0	0	45	0.99
7054029--7054060	2	16.0	2	100	0	64	50	0	0	50	1.00
7062859--7062897	2	20.0	2	94	5	71	48	0	0	51	1.00
7065577--7065622	23	2.0	24	83	12	60	52	0	0	47	1.00
7072637--7072868	115	2.0	115	99	0	455	43	7	1	46	1.41
7073282--7073312	16	1.9	16	100	0	62	70	0	3	25	1.02
7073374--7073435	32	1.9	33	83	3	81	50	1	1	46	1.20
7083229--7083304	31	2.5	31	86	2	109	50	1	5	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7083638--7083690	22	2.5	20	75	19	54	49	1	0	49	1.12
7084175--7084335	84	1.9	84	89	2	252	23	21	24	31	1.98
7084395--7084538	71	2.0	71	94	0	252	15	30	27	26	1.96
7086209--7086237	9	3.3	9	90	9	51	24	0	0	75	0.80
7086200--7086237	17	2.3	16	90	4	58	26	0	0	73	0.83
7086708--7086741	17	1.9	17	94	5	59	52	2	0	44	1.16
7087078--7087103	8	3.2	8	100	0	52	23	0	0	76	0.78
7087281--7087336	12	4.6	12	82	10	69	50	14	0	35	1.43
7087639--7087682	17	2.5	17	82	14	54	59	6	0	34	1.24
7093239--7093273	2	18.0	2	94	5	63	48	0	0	51	1.00
7093642--7093678	3	12.3	3	100	0	74	64	0	0	35	0.94
7093677--7093715	3	13.0	3	100	0	78	33	0	0	66	0.92
7094444--7094515	30	2.3	30	85	4	90	41	0	1	56	1.07
7102169--7102199	15	2.1	15	100	0	62	38	25	0	35	1.56
7105965--7106004	6	6.1	7	82	11	50	85	0	2	12	0.71
7105965--7105995	13	2.5	13	94	5	55	87	0	0	12	0.55
7106900--7107007	35	3.1	34	85	5	139	37	10	14	37	1.80
7107220--7107406	82	2.4	75	75	14	196	34	9	15	40	1.79
7107265--7107436	82	2.1	82	84	0	218	31	12	15	39	1.85
7107426--7107572	42	3.4	42	70	14	134	23	9	25	42	1.84
7107374--7107574	90	2.2	90	91	0	321	23	9	22	43	1.83
7107697--7107930	42	5.4	42	74	10	182	26	8	21	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7107823--7107923	51	2.0	51	82	0	121	29	8	20	40	1.83
7108032--7108232	101	2.0	101	80	5	228	30	11	16	41	1.84
7108137--7108279	53	2.8	51	85	5	164	30	11	17	41	1.84
7109439--7109509	36	2.0	36	91	0	115	43	15	15	25	1.86
7109759--7109811	20	2.8	18	78	13	52	32	1	0	66	1.03
7109765--7109807	21	2.1	20	82	4	50	25	2	0	72	0.97
7110181--7110208	10	2.8	10	100	0	56	71	0	0	28	0.86
7110461--7110511	24	2.1	24	85	3	66	56	5	1	35	1.35
7112748--7112781	7	5.0	7	92	3	52	85	0	14	0	0.60
7117279--7117580	154	1.9	155	82	7	373	38	12	5	43	1.67
7117562--7117676	59	1.9	62	87	5	173	40	12	5	42	1.65
7117540--7117672	62	2.1	64	77	13	143	39	12	3	44	1.61
7118120--7118332	117	1.8	117	85	0	300	42	9	4	43	1.57
7118514--7118712	60	3.3	58	76	14	181	39	17	2	40	1.63
7119959--7119987	15	1.9	15	100	0	58	27	20	0	51	1.47
7127947--7127979	3	11.0	3	100	0	66	33	0	0	66	0.92
7136261--7136921	227	2.9	223	80	9	713	44	4	10	41	1.59
7136870--7136898	11	2.7	11	94	5	51	41	0	6	51	1.28
7136926--7136969	22	2.0	22	86	8	63	40	0	2	56	1.11
7137140--7137180	2	21.0	2	87	5	57	46	0	2	51	1.14
7137145--7137191	14	3.3	15	80	11	55	42	0	6	51	1.27
7137228--7137276	24	2.0	24	100	0	98	38	16	4	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7137231--7137282	24	2.2	24	93	3	88	38	17	5	38	1.74
7141872--7141904	17	1.9	17	88	11	50	39	0	6	54	1.25
7142719--7142744	2	13.0	2	100	0	52	50	0	0	50	1.00
7143976--7144042	34	2.0	34	85	8	93	25	5	16	52	1.66
7144755--7144786	3	10.7	3	93	0	55	31	0	3	65	1.08
7145040--7145068	14	2.1	14	93	6	51	58	0	0	41	0.98
7147642--7148214	294	2.0	292	80	4	645	35	13	13	37	1.84
7148347--7148415	35	2.0	35	88	5	104	37	4	14	43	1.65
7151617--7151660	12	3.6	12	84	6	61	43	29	9	18	1.80
7152339--7152548	113	1.9	113	82	7	266	44	10	9	35	1.70
7152454--7153227	187	4.1	186	79	6	814	41	9	12	36	1.75
7152454--7153216	373	2.0	373	83	5	952	41	9	11	36	1.75
7163753--7163793	2	21.5	2	82	9	50	43	0	2	53	1.13
7171078--7171114	3	12.3	3	100	0	74	32	0	0	67	0.91
7171369--7171397	14	2.1	14	93	6	51	58	0	0	41	0.98
7177023--7177068	23	2.0	23	87	8	67	54	0	0	45	0.99
7178293--7178325	16	2.0	17	88	5	50	42	3	6	48	1.43
7178938--7178966	5	6.0	5	92	8	51	20	0	0	79	0.74
7179903--7179941	12	3.1	12	88	7	51	38	2	0	58	1.12
7180014--7180053	10	4.1	10	83	6	55	67	0	0	32	0.91
7192259--7192626	49	7.6	49	77	9	177	33	11	17	38	1.85
7192259--7192880	48	12.9	48	78	7	485	31	10	18	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7192291--7192813	141	3.7	141	77	8	491	30	10	18	39	1.85
7193027--7193055	15	1.9	15	100	0	58	0	10	0	89	0.48
7193027--7193060	15	2.1	17	89	10	54	0	11	0	88	0.52
7194101--7194144	21	2.1	21	87	8	63	77	0	2	20	0.88
7194109--7194144	10	3.5	10	88	7	54	80	0	2	16	0.83
7194096--7194479	205	1.9	199	83	7	488	50	6	9	32	1.62
7207762--7207853	46	2.0	46	91	0	148	46	8	6	38	1.61
7209705--7209740	17	2.2	16	90	5	54	58	0	0	41	0.98
7209724--7209771	20	2.2	21	82	14	62	50	2	0	47	1.12
7209734--7209771	20	1.9	20	100	0	76	50	2	0	47	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84