genome.fa.s157.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  56  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12795036--12795068	1	33.0	1	100	0	66	0	0	0	100	0.00
12798319--12798366	2	24.0	2	95	0	87	0	47	0	52	1.00
12803225--12803289	33	2.0	33	96	0	121	49	13	16	20	1.80
12809879--12810026	73	2.0	73	94	3	262	20	8	24	46	1.78
12813362--12813386	12	2.1	12	100	0	50	44	16	16	24	1.86
12815897--12815923	1	27.0	1	100	0	54	100	0	0	0	0.00
12817962--12818016	23	2.4	23	93	0	92	14	5	32	47	1.67
12818470--12818524	27	2.1	26	86	3	74	49	0	0	50	1.00
12818544--12818588	15	3.0	15	83	9	56	60	0	0	40	0.97
12824000--12824036	19	2.1	17	90	10	56	48	0	0	51	1.00
12824400--12824459	21	2.8	21	75	20	61	51	0	3	45	1.17
12824533--12824596	35	1.9	32	87	9	92	43	0	1	54	1.09
12824595--12824658	26	2.5	25	76	14	67	46	4	3	45	1.39
12826078--12826117	21	1.9	21	84	0	53	5	5	2	87	0.73
12826210--12826262	23	2.3	23	81	9	63	11	9	5	73	1.24
12826441--12826473	9	3.8	9	88	4	50	15	6	0	78	0.93
12826441--12826474	17	1.9	17	94	5	59	17	5	0	76	0.98
12829794--12829834	17	2.6	16	88	7	57	51	0	4	43	1.23
12829938--12829972	8	4.5	8	89	7	54	45	0	0	54	0.99
12829957--12830032	17	4.4	17	74	12	66	44	0	1	53	1.08
12830922--12830964	13	3.4	12	87	9	59	83	0	0	16	0.64
12830925--12830988	6	10.8	6	84	14	71	81	0	4	14	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12830922--12830964	19	2.2	20	88	12	72	83	0	0	16	0.64
12830923--12830988	30	2.2	29	84	10	89	81	0	4	13	0.83
12831233--12831304	31	2.3	31	85	0	90	47	16	6	29	1.73
12831282--12831313	12	2.7	12	95	0	55	53	15	6	25	1.65
12831799--12831846	3	16.0	3	95	0	60	41	0	25	33	1.55
12831793--12831836	21	2.1	21	86	0	61	50	0	18	31	1.47
12831792--12831839	24	2.0	24	91	0	78	50	0	18	31	1.48
12832110--12832821	119	6.0	118	78	5	551	44	14	21	19	1.86
12833646--12833688	14	3.3	13	81	9	52	2	6	6	83	0.88
12843663--12843693	16	1.9	16	93	0	53	83	3	0	12	0.75
12845262--12845293	16	2.1	16	94	5	57	78	0	9	12	0.97
12845372--12845427	21	2.7	20	83	8	58	76	0	16	7	0.99
12845498--12845530	17	1.9	17	93	0	57	87	6	0	6	0.65
12845696--12845734	13	3.0	13	88	11	62	74	0	10	15	1.07
12845696--12845733	12	2.9	13	92	7	60	73	0	10	15	1.09
12845696--12845735	14	3.0	14	82	14	57	75	0	10	15	1.05
12846214--12846252	20	2.0	20	90	10	62	48	0	0	51	1.00
12846442--12846480	20	2.0	20	89	0	60	87	7	0	5	0.68
12847024--12847076	26	2.1	25	86	6	72	69	0	15	15	1.19
12847056--12847099	23	1.9	23	85	0	61	72	4	15	6	1.22
12847464--12847507	16	2.8	16	89	6	63	72	9	2	15	1.19
12848622--12848697	29	2.6	30	81	10	77	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12849680--12849726	23	2.0	23	83	0	58	80	0	8	10	0.89
12849689--12849736	20	2.3	20	82	10	53	83	0	10	6	0.81
12849690--12849753	33	2.0	31	85	11	85	82	0	10	6	0.82
12851419--12851532	23	5.2	22	69	20	78	20	7	1	71	1.19
12851448--12851517	27	2.5	28	80	17	76	21	7	1	70	1.20
12851469--12851552	24	3.6	22	73	20	73	22	5	1	70	1.16
12851424--12851551	44	2.9	43	73	13	116	21	7	1	69	1.21
12851933--12852019	23	3.8	24	76	13	67	17	5	0	77	0.96
12851943--12852035	17	5.5	17	78	16	97	16	4	0	79	0.88
12851943--12852035	6	15.5	6	83	10	111	16	4	0	79	0.88
12852053--12852213	58	2.8	58	77	11	168	42	6	12	37	1.69
12852054--12852211	59	2.7	56	77	13	149	43	6	12	37	1.69
12856113--12856144	13	2.5	13	94	0	55	81	0	9	9	0.88
12857956--12858226	42	6.6	42	83	7	265	28	15	19	36	1.92
12857995--12858459	42	11.1	42	81	9	416	27	16	19	35	1.94
12858025--12858459	83	5.2	84	80	10	385	27	16	19	36	1.94
12858146--12858459	125	2.5	125	86	7	413	27	16	19	35	1.94
12858178--12858508	42	7.8	44	81	8	271	26	16	20	37	1.93
12858527--12858571	1	45.0	1	81	0	54	91	4	0	4	0.52
12858527--12858571	20	2.2	20	100	0	90	91	4	0	4	0.52
12858793--12858870	23	3.2	23	75	14	77	21	6	0	71	1.08
12858808--12858911	17	6.0	17	69	14	52	24	6	0	68	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12858828--12858891	27	2.3	28	86	10	87	23	7	0	68	1.15
12858824--12858925	24	4.3	23	72	16	75	22	6	0	69	1.18
12859192--12859216	13	1.9	13	100	0	50	20	24	32	24	1.98
12859282--12859365	17	5.1	17	74	16	79	15	5	1	77	1.02
12859282--12859375	5	17.8	5	76	19	77	15	5	1	77	1.00
12859283--12859375	22	4.4	21	80	12	93	16	5	1	77	1.01
12859299--12859376	33	2.3	35	84	8	99	16	6	0	76	0.98
12859306--12859380	23	3.2	22	72	24	64	17	6	0	76	1.00
12859282--12859380	28	3.6	26	79	17	94	16	6	1	76	1.03
12859392--12859603	59	3.7	58	85	7	263	43	8	13	34	1.74
12859388--12859603	117	1.9	115	85	5	301	43	8	13	34	1.75
12861529--12861663	72	1.9	72	84	3	182	25	8	16	49	1.73
12863263--12863319	28	2.1	27	86	3	78	61	3	3	31	1.30
12865497--12865529	17	1.9	17	93	0	57	45	3	3	48	1.33
12865498--12865536	17	2.4	16	87	8	53	51	2	2	43	1.29
12865553--12865591	20	2.0	20	89	0	60	56	2	2	38	1.27
12865518--12865623	43	2.4	45	83	10	123	53	1	2	41	1.26
12869334--12869367	2	17.0	2	100	0	68	0	50	0	50	1.00
12873738--12873787	3	16.7	3	95	0	91	32	2	0	66	1.03
12874122--12874150	2	14.5	2	100	0	58	0	48	0	51	1.00
12877711--12877764	23	2.4	22	75	6	54	53	0	1	44	1.11
12878011--12878080	9	8.0	8	79	14	59	82	4	2	10	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12878014--12878088	27	2.8	25	76	21	73	82	5	2	9	0.91
12879182--12879232	8	6.2	8	75	11	50	80	0	5	13	0.89
12879185--12879231	24	1.9	24	86	4	67	80	0	6	12	0.88
12879881--12879936	27	2.1	27	87	12	80	78	3	8	8	1.07
12880382--12880406	13	1.9	13	100	0	50	80	0	12	8	0.92
12884927--12884968	6	8.0	5	85	15	50	21	0	0	78	0.75
12884928--12884968	11	3.8	11	78	18	50	19	0	0	80	0.71
12884927--12884985	27	2.2	28	81	9	77	20	3	1	74	1.05
12885952--12886059	4	26.5	4	67	14	60	17	2	8	71	1.23
12885992--12886042	22	2.3	22	83	6	59	15	0	9	74	1.06
12887336--12887373	2	19.0	2	100	0	76	50	0	0	50	1.00
12888803--12888981	64	2.8	64	80	7	177	42	11	13	32	1.79
12888906--12889092	64	2.9	65	78	8	179	39	11	14	34	1.83
12889004--12889345	62	5.5	59	72	12	179	38	12	11	38	1.78
12889149--12889327	60	2.9	60	80	5	171	33	11	13	41	1.81
12889177--12889329	61	2.5	61	81	3	180	32	13	11	42	1.80
12888966--12889367	63	6.4	63	74	8	239	37	11	12	38	1.80
12895628--12895674	24	2.0	24	91	8	78	68	0	0	31	0.90
12902037--12902194	57	2.8	57	75	6	142	44	15	12	27	1.81
12902270--12902403	42	3.2	41	83	5	151	43	20	7	28	1.79
12908768--12908827	26	2.4	24	79	15	68	68	13	6	11	1.39
12909703--12909750	21	2.2	23	85	7	64	43	0	6	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12909712--12909781	38	1.9	35	82	8	86	45	1	4	48	1.30
12914386--12914435	22	2.2	23	86	13	77	28	12	4	56	1.54
12917571--12917849	93	3.0	93	85	2	407	31	17	14	37	1.89
12931596--12931643	25	1.9	25	82	0	60	25	10	14	50	1.74
12934519--12934582	30	2.1	30	85	0	83	34	4	18	42	1.71
12938676--12938729	17	3.1	17	81	7	65	11	3	7	77	1.09
12938674--12938729	18	3.2	18	82	10	62	12	3	7	76	1.11
12938703--12938740	20	2.0	20	84	5	51	15	5	7	71	1.28
12938932--12939978	49	21.9	47	83	6	1202	36	21	13	27	1.92
12938929--12939978	96	11.0	95	85	6	1265	36	21	13	27	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84