genome.fa.s157.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  8  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1194457--1194572	5	23.6	5	71	16	66	76	1	5	16	1.04
1194456--1194558	30	3.5	30	80	12	99	77	1	5	14	1.04
1194457--1194558	11	8.8	11	76	12	73	78	1	4	14	1.01
1194457--1194558	6	17.5	6	71	19	74	78	1	4	14	1.01
1194457--1194551	46	2.0	48	80	11	108	78	2	4	14	0.99
1194457--1194550	41	2.3	41	85	9	129	78	2	4	14	0.99
1194457--1194561	41	2.6	39	79	13	113	78	1	5	14	1.02
1194487--1194572	28	3.3	25	74	17	77	77	1	4	16	0.99
1195486--1195677	21	9.1	21	68	21	59	68	2	5	23	1.20
1195624--1195683	11	5.5	11	77	15	54	70	0	1	28	0.97
1195666--1195721	25	2.2	26	83	3	69	66	3	5	25	1.29
1199249--1199280	15	2.1	16	94	5	57	56	6	18	18	1.62
1202354--1202394	14	2.8	15	85	7	57	78	0	9	12	0.98
1202414--1202747	59	5.7	58	80	10	351	35	12	5	45	1.67
1202414--1202747	116	2.8	114	88	6	474	35	12	5	45	1.67
1202763--1202866	5	20.6	5	75	13	81	76	1	3	17	1.02
1202762--1202845	28	2.9	28	84	8	98	78	2	4	14	1.01
1202763--1202855	11	8.1	11	81	11	98	78	2	4	15	1.00
1202763--1202845	34	2.4	35	87	4	114	79	2	3	14	0.97
1202758--1202852	28	3.4	26	76	16	84	77	2	5	14	1.03
1203773--1203834	25	2.4	25	78	7	63	66	4	4	24	1.31
1203900--1203980	28	2.9	28	75	12	67	62	2	6	28	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1203942--1204016	25	3.1	25	79	7	66	66	5	6	21	1.35
1204079--1204587	253	2.0	253	93	1	860	33	8	7	49	1.63
1205704--1205754	23	2.2	23	89	0	75	21	15	15	47	1.83
1205914--1205953	3	13.0	3	89	5	62	62	0	2	35	1.09
1206159--1206452	49	5.8	49	76	8	227	42	22	8	26	1.82
1206176--1206452	103	2.7	98	77	10	279	41	23	8	26	1.83
1206176--1206451	52	5.5	50	78	8	265	42	22	8	26	1.83
1217839--1217894	27	2.1	27	82	0	67	37	1	3	57	1.27
1222048--1222085	6	6.3	6	96	0	67	18	0	47	34	1.49
1222429--1222491	18	3.5	18	80	4	74	36	26	4	31	1.78
1222876--1222903	6	4.7	6	100	0	56	46	0	0	53	1.00
1228938--1228968	16	1.9	16	93	0	53	41	6	3	48	1.45
1235195--1235252	21	2.8	21	82	10	75	1	25	5	67	1.21
1237151--1237184	14	2.5	14	90	4	52	50	0	0	50	1.00
1237365--1237417	22	2.4	22	84	9	63	39	0	0	60	0.97
1237390--1237431	16	2.5	17	84	7	59	50	0	0	50	1.00
1237421--1237490	11	6.6	10	76	20	54	52	0	0	47	1.00
1237404--1237490	22	4.0	22	76	16	76	51	0	0	48	1.00
1237745--1237810	24	2.8	24	79	2	62	68	1	0	30	0.99
1237762--1237810	24	2.0	24	88	7	73	67	2	0	30	1.02
1237768--1237848	32	2.4	34	79	6	94	69	1	3	25	1.13
1237757--1237811	24	2.3	23	82	11	67	65	1	0	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241627--1241651	1	25.0	1	100	0	50	0	0	0	100	0.00
1242315--1242352	18	2.1	18	90	0	58	18	36	0	44	1.50
1249792--1249830	21	1.9	20	85	15	53	12	20	5	61	1.50
1251131--1251170	18	2.2	19	90	4	64	45	0	2	52	1.14
1258034--1258072	15	2.5	15	91	4	60	46	0	0	53	1.00
1274167--1274221	21	2.7	19	80	8	56	27	1	3	67	1.17
1274168--1274221	20	2.7	18	81	16	54	27	1	3	66	1.19
1274657--1274839	46	3.9	46	82	9	201	28	8	6	56	1.54
1274657--1274839	92	2.0	94	88	4	273	28	8	6	56	1.54
1274841--1274873	2	16.5	2	100	0	66	0	48	0	51	1.00
1275347--1275373	4	6.8	4	100	0	54	77	0	0	22	0.76
1286373--1286697	59	5.6	56	82	10	379	36	12	7	44	1.70
1286374--1286721	118	3.0	118	89	5	505	35	12	6	45	1.67
1286741--1286798	17	3.4	17	80	4	73	79	1	5	13	0.98
1286744--1286809	27	2.4	27	78	14	73	78	1	6	13	1.00
1286726--1286804	34	2.4	34	84	16	96	75	1	7	15	1.08
1286745--1286809	11	5.9	11	76	15	55	78	1	6	13	1.01
1286753--1286810	17	3.4	17	72	13	57	77	1	6	13	1.05
1287197--1287245	20	2.5	20	89	0	71	16	20	26	36	1.93
1287693--1287746	22	2.3	24	81	18	69	66	5	7	20	1.37
1287791--1287836	17	2.7	17	84	15	60	65	2	0	32	1.05
1287907--1287976	9	7.3	10	80	15	51	68	7	0	24	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1287791--1287942	14	11.4	14	69	18	60	65	4	1	27	1.23
1289663--1289696	18	1.9	17	94	5	59	61	14	17	5	1.52
1292438--1292468	2	15.5	2	100	0	62	48	0	0	51	1.00
1296922--1297015	46	2.0	46	93	0	161	26	13	14	44	1.83
1300522--1300575	24	2.3	23	81	9	63	62	9	5	22	1.45
1301341--1301424	29	2.9	28	72	8	78	30	13	4	51	1.61
1301335--1301536	111	1.8	111	85	7	284	33	14	5	46	1.69
1302364--1302404	2	20.5	2	100	0	82	51	0	48	0	1.00
1302433--1302469	18	2.2	18	85	9	51	27	5	0	67	1.12
1302508--1302538	12	2.6	12	94	0	53	25	0	9	64	1.24
1306740--1306767	2	14.0	2	100	0	56	50	0	0	50	1.00
1307208--1307297	46	2.0	46	88	0	135	37	11	8	42	1.72
1307305--1307333	2	14.5	2	100	0	58	51	0	0	48	1.00
1307335--1307360	2	13.0	2	100	0	52	50	0	50	0	1.00
1311787--1311852	33	2.0	33	90	0	105	42	9	10	37	1.71
1312954--1313002	21	2.6	18	75	12	53	28	6	2	63	1.30
1314368--1314414	23	2.0	23	92	8	78	23	4	8	63	1.40
1314595--1316084	98	15.3	98	81	6	1416	35	21	13	29	1.92
1314588--1316093	48	31.0	49	79	7	1452	35	21	13	29	1.92
1316829--1316867	8	4.8	8	84	6	51	5	7	0	87	0.68
1316836--1316868	9	3.8	9	88	8	50	3	9	0	87	0.63
1316829--1316868	17	2.4	17	91	0	62	5	7	0	87	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1326648--1326711	33	1.9	34	87	3	94	10	0	20	68	1.19
1327147--1327183	17	2.3	17	90	9	60	10	0	5	83	0.79
1328096--1328144	21	2.6	18	75	12	53	28	6	0	65	1.16
1329563--1329620	23	2.8	20	82	14	80	17	3	12	67	1.36
1329668--1329790	61	2.0	61	93	0	210	39	8	11	41	1.71
1330424--1330511	46	1.9	46	88	0	131	37	7	10	44	1.68
1330549--1330580	2	16.0	2	100	0	64	50	0	50	0	1.00
1331991--1332056	21	3.3	20	70	19	57	24	57	1	16	1.48
1344676--1344714	3	13.0	3	88	0	60	61	0	0	38	0.96
1345409--1345454	20	2.3	20	96	0	83	28	30	17	23	1.97
1346591--1346639	26	2.0	26	84	8	66	55	2	2	40	1.23
1346784--1346923	16	9.2	15	74	13	108	47	34	1	16	1.55
1346837--1346926	14	6.1	14	77	11	65	51	35	1	12	1.47
1346857--1346965	51	2.1	50	81	6	130	48	36	0	13	1.49
1348694--1348722	2	14.5	2	100	0	58	51	0	0	48	1.00
1351435--1351471	13	2.7	14	91	4	58	75	0	5	18	0.99
1352749--1352799	13	3.8	13	78	12	59	17	0	3	78	0.90
1353338--1353395	16	3.8	16	70	23	52	46	1	0	51	1.11
1355005--1355062	26	2.2	25	82	11	73	51	1	0	46	1.11
1355020--1355106	17	5.3	17	67	20	60	50	1	0	48	1.08
1355013--1355107	31	3.0	31	87	10	122	51	1	0	47	1.07
1355085--1355161	25	3.1	25	81	7	93	46	1	0	51	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1355087--1355161	24	3.0	24	82	5	96	46	1	0	52	1.09
1355654--1355910	58	4.4	57	78	10	241	39	11	5	43	1.63
1355889--1355932	22	2.0	22	95	0	79	40	11	9	38	1.73
1355828--1355990	80	2.0	82	86	5	233	40	8	6	44	1.60
1355873--1356024	58	2.5	60	84	10	191	39	9	5	44	1.62
1356029--1356108	6	12.3	6	78	13	79	78	1	2	17	0.92
1356024--1356110	27	3.1	27	76	20	88	77	1	3	18	0.98
1356028--1356105	39	2.0	39	85	9	106	76	1	3	17	1.00
1357010--1357090	41	2.0	41	83	9	105	61	3	4	29	1.34
1357368--1357746	43	8.9	43	87	3	484	39	19	16	24	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84