genome.fa.s157.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  25  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5495432--5495464	17	1.9	17	88	11	50	63	0	3	33	1.10
5506646--5506674	2	14.5	2	100	0	58	51	0	0	48	1.00
5510494--5510593	2	50.0	2	100	0	200	0	50	0	50	1.00
5525927--5526026	31	3.3	29	79	9	96	49	3	0	48	1.16
5525956--5526035	29	2.5	31	82	9	83	50	2	0	47	1.14
5533179--5533228	16	3.3	16	73	21	54	46	4	2	48	1.32
5537825--5537899	22	3.5	22	75	13	59	50	2	0	46	1.15
5538233--5538258	13	2.0	13	100	0	52	46	0	0	53	1.00
5538722--5538778	19	3.1	19	80	12	57	70	1	0	28	0.98
5539074--5539118	24	1.9	23	82	13	56	60	4	0	35	1.17
5539135--5539159	11	2.3	11	100	0	50	52	0	0	48	1.00
5539188--5539228	18	2.3	19	83	12	59	34	0	0	65	0.93
5539190--5539248	21	2.8	21	76	5	66	35	0	0	64	0.94
5541321--5541456	52	2.6	52	77	8	134	27	18	6	47	1.73
5541489--5541528	11	3.6	11	89	0	62	55	17	0	27	1.43
5541486--5541528	22	2.0	22	95	0	77	51	18	0	30	1.47
5543519--5543561	20	2.0	22	86	8	63	32	0	2	65	1.06
5544045--5544078	2	17.0	2	93	0	59	47	0	2	50	1.16
5545681--5545760	40	2.0	40	100	0	160	47	7	7	37	1.60
5545697--5545761	19	3.3	19	64	16	51	47	10	4	36	1.59
5546127--5546172	24	1.9	24	86	0	65	52	4	0	43	1.21
5560076--5560100	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5566571--5566611	21	1.9	22	85	5	57	26	14	12	46	1.80
5566623--5566707	22	4.0	21	73	13	66	36	5	7	50	1.54
5566633--5566691	22	2.7	22	84	2	75	35	6	6	50	1.55
5566623--5566707	21	4.0	21	70	23	70	36	5	7	50	1.54
5566982--5567122	22	6.4	21	75	8	93	40	7	4	46	1.54
5566971--5567094	44	2.8	44	78	11	128	41	5	4	48	1.45
5567030--5567088	11	5.4	11	80	8	50	44	1	3	50	1.28
5567149--5567222	22	3.4	22	76	10	62	39	9	5	45	1.59
5567223--5567318	22	4.4	22	76	7	88	37	8	5	48	1.56
5567376--5567472	22	4.5	22	73	12	85	37	12	2	48	1.53
5567639--5567695	22	2.6	22	83	5	71	38	8	7	45	1.62
5567833--5567862	12	2.5	12	88	0	51	33	0	0	66	0.92
5568064--5568125	11	5.6	11	68	0	52	40	4	9	45	1.58
5568063--5568213	22	6.9	22	75	7	110	38	5	7	47	1.57
5568163--5568284	22	5.3	22	72	14	77	42	8	2	46	1.46
5568234--5568384	22	6.9	22	82	4	144	37	6	3	51	1.47
5568063--5568384	44	7.2	44	74	8	170	38	7	5	48	1.54
5568099--5568378	66	4.2	66	71	9	199	38	7	5	48	1.53
5568443--5568569	43	2.9	42	79	9	121	37	9	5	47	1.59
5568478--5568612	22	6.2	22	66	5	78	37	8	3	50	1.50
5568278--5568577	44	6.9	43	72	9	153	35	9	6	50	1.59
5568690--5568754	22	3.0	22	86	0	85	38	4	3	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5568690--5568754	11	5.9	11	81	0	76	38	4	3	53	1.37
5568866--5568907	22	1.9	22	95	0	75	35	7	7	50	1.57
5570535--5570835	153	2.0	153	95	1	541	44	10	12	32	1.77
5571301--5572706	767	1.8	770	83	6	1897	46	6	6	40	1.58
5572903--5572936	17	2.0	17	94	0	59	2	29	2	64	1.22
5572918--5572953	14	2.5	15	86	13	58	0	25	11	63	1.27
5573570--5573624	4	14.5	4	77	11	62	50	0	21	27	1.49
5573573--5573624	11	4.6	11	79	13	61	50	0	23	26	1.50
5573570--5573626	15	4.1	14	75	22	57	50	0	22	26	1.49
5573568--5573619	26	2.0	27	92	3	88	51	0	21	26	1.47
5573565--5573632	34	2.1	31	86	10	93	51	0	19	29	1.47
5574847--5574920	16	4.6	16	73	9	62	50	6	8	35	1.59
5576375--5576416	16	2.6	16	80	0	57	54	7	4	33	1.49
5582864--5582895	2	16.0	2	100	0	64	50	0	0	50	1.00
5583252--5583280	2	14.5	2	100	0	58	48	0	0	51	1.00
5586138--5586170	2	16.5	2	100	0	66	51	0	0	48	1.00
5588347--5588400	24	2.4	22	75	24	58	44	1	16	37	1.59
5589695--5589773	40	2.0	40	97	0	149	55	13	6	24	1.61
5591163--5591218	28	2.0	28	93	6	96	23	12	21	42	1.86
5592542--5592940	196	2.0	196	98	0	771	28	16	15	39	1.89
5597370--5597765	58	6.7	59	78	5	397	42	6	13	37	1.70
5597387--5597765	118	3.2	118	91	0	605	41	6	13	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5602539--5602622	30	2.7	30	77	15	91	76	1	14	8	1.07
5602543--5602622	19	4.0	19	71	21	65	78	1	12	7	1.01
5604419--5604762	85	4.1	82	83	8	340	25	15	21	38	1.92
5604426--5604763	42	8.0	41	78	11	310	24	15	20	39	1.92
5604708--5604977	99	2.6	102	82	6	307	37	10	14	36	1.82
5604894--5605056	79	2.0	80	84	3	213	31	12	17	39	1.86
5607460--5607739	121	2.3	119	90	2	427	44	6	10	38	1.64
5607460--5607739	59	4.7	58	80	8	328	44	6	10	38	1.64
5608475--5608518	20	2.2	20	80	15	56	18	2	15	63	1.41
5608867--5608944	12	6.5	11	74	18	66	14	1	5	79	0.96
5608872--5608928	25	2.2	26	87	6	80	8	1	7	82	0.91
5608897--5608943	22	2.3	19	82	13	58	14	0	2	82	0.75
5609006--5609045	3	13.0	3	94	5	71	32	0	0	67	0.91
5609183--5609220	3	13.0	3	94	5	69	34	0	0	65	0.93
5609251--5609287	13	2.7	15	88	12	53	27	5	0	67	1.12
5612316--5612491	46	4.0	45	78	14	179	31	7	14	45	1.74
5612319--5612390	22	3.2	23	74	7	67	30	9	13	45	1.76
5612413--5612561	24	6.3	24	78	6	162	34	6	12	46	1.67
5612335--5612491	85	1.8	85	87	2	235	32	7	14	46	1.71
5612412--5612549	70	2.0	70	91	0	222	34	7	13	44	1.71
5612420--5612566	46	3.2	46	84	6	183	33	6	14	45	1.70
5612599--5612645	22	2.2	22	88	3	69	38	0	12	48	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5613064--5613171	36	3.0	36	80	2	137	34	12	11	42	1.77
5613080--5613171	18	5.2	18	77	2	87	33	10	9	45	1.72
5613069--5613191	36	3.5	34	76	7	122	34	14	9	40	1.79
5613566--5613602	11	3.1	12	88	11	58	27	0	2	70	1.01
5614560--5614594	14	2.6	13	86	8	52	5	2	8	82	0.91
5614586--5614632	14	3.5	13	78	13	51	27	6	0	65	1.16
5614786--5614854	19	3.6	19	75	5	68	31	7	10	50	1.63
5614888--5614915	14	2.0	14	100	0	56	28	0	7	64	1.20
5618722--5618761	19	2.1	19	85	4	53	42	5	12	40	1.64
5618745--5618874	21	6.2	21	76	7	120	34	8	6	50	1.60
5618745--5618871	41	3.0	40	72	12	112	34	8	7	49	1.61
5618834--5618875	22	2.0	22	90	4	68	26	11	11	50	1.74
5619498--5619624	22	5.9	22	74	9	100	42	8	2	46	1.47
5619537--5619748	22	9.6	22	66	17	64	41	8	5	44	1.58
5619715--5619764	22	2.3	22	79	6	57	44	6	4	46	1.47
5620105--5620198	22	4.3	22	74	8	66	41	9	4	44	1.56
5620238--5620335	22	4.5	22	75	7	83	42	6	4	46	1.47
5620369--5620706	44	7.7	44	71	13	151	37	9	5	47	1.60
5620384--5620641	66	3.9	65	70	12	172	36	10	5	47	1.61
5620547--5620706	65	2.5	64	81	11	159	39	8	4	48	1.53
5620623--5620652	10	2.8	11	90	10	53	36	6	0	56	1.26
5620354--5620710	22	16.3	22	70	14	123	37	8	5	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5620755--5620810	22	2.6	21	80	8	67	39	16	1	42	1.58
5620755--5620852	44	2.2	44	83	3	117	39	12	3	44	1.57
5620773--5620859	22	4.0	22	86	0	120	37	10	4	47	1.58
5620821--5621109	142	2.0	142	97	0	542	33	7	4	54	1.50
5621068--5621153	22	3.9	22	69	4	57	32	5	6	54	1.51
5622183--5622209	2	13.5	2	100	0	54	51	0	0	48	1.00
5624766--5624832	28	2.5	27	92	4	109	52	0	0	47	1.00
5624766--5624846	26	3.0	26	82	7	74	51	0	1	46	1.08
5624915--5624964	21	2.3	22	79	3	66	42	2	2	54	1.23
5626870--5627013	72	2.0	72	98	0	279	35	13	15	34	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84