genome.fa.s157.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  81  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17528059--17528091	17	1.9	17	100	0	66	42	6	9	42	1.61
17528488--17528532	3	15.7	3	86	13	51	24	2	0	73	0.95
17530889--17530913	3	8.3	3	100	0	50	32	0	0	68	0.90
17535006--17535048	21	2.1	20	87	12	61	48	0	18	32	1.48
17538525--17538601	38	2.0	38	89	0	118	29	9	28	32	1.88
17540715--17540756	19	2.3	19	87	4	59	61	9	2	26	1.39
17540753--17540801	15	3.3	15	80	8	55	63	2	2	32	1.17
17540877--17540923	23	2.0	25	84	16	64	63	8	4	23	1.40
17540944--17540982	15	2.4	17	83	12	55	48	7	0	43	1.31
17541012--17541080	19	3.8	18	80	12	72	68	1	4	26	1.17
17541012--17541062	20	2.6	19	87	6	75	68	1	3	25	1.17
17541246--17541285	21	1.9	21	94	0	71	37	12	10	40	1.77
17541546--17541591	21	2.2	20	92	3	74	52	0	0	47	1.00
17541532--17541592	26	2.3	27	76	21	67	49	0	0	50	1.00
17542159--17542198	13	3.1	13	81	0	53	57	0	0	42	0.98
17550759--17550825	21	3.2	21	91	0	107	28	10	13	47	1.75
17550541--17551070	285	1.9	285	94	0	934	30	18	15	35	1.92
17560719--17560761	11	3.8	11	84	6	50	32	4	0	62	1.15
17562839--17562887	21	2.3	22	75	7	55	55	8	0	36	1.30
17563623--17563652	14	2.1	15	93	6	53	46	6	0	46	1.29
17563651--17563698	24	2.0	24	84	8	62	50	0	0	50	1.00
17563657--17563719	24	2.6	24	87	9	92	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17567240--17567275	18	2.1	18	89	5	56	30	19	0	50	1.48
17568714--17568758	22	2.0	22	82	0	54	48	0	4	46	1.22
17568931--17568961	14	2.1	15	94	5	55	41	3	0	54	1.16
17569678--17569713	2	18.0	2	100	0	72	50	0	0	50	1.00
17572967--17572994	2	14.0	2	100	0	56	50	0	0	50	1.00
17576420--17576458	18	2.1	18	90	4	60	38	12	12	35	1.82
17577752--17577812	31	2.0	31	86	0	86	40	11	14	32	1.82
17579901--17579932	11	2.9	11	95	0	55	21	0	9	68	1.17
17579916--17580042	8	15.8	8	68	19	77	34	3	4	56	1.39
17579950--17580045	5	20.0	5	73	14	78	36	3	4	56	1.34
17579969--17580045	13	5.8	13	74	17	61	36	2	3	57	1.31
17580045--17580077	6	5.7	6	89	3	50	9	0	3	87	0.63
17580912--17580984	13	6.0	12	80	16	62	23	0	4	72	1.01
17580906--17580962	29	2.0	29	86	6	80	22	1	1	73	1.02
17580912--17580983	18	3.9	18	78	7	65	22	0	4	73	1.00
17580906--17581009	32	3.4	31	75	16	83	22	1	3	72	1.11
17580906--17581013	6	17.3	6	69	23	55	22	1	3	72	1.10
17580988--17581022	17	2.0	17	88	5	52	22	0	11	65	1.24
17581045--17581111	22	3.2	20	72	16	55	64	0	2	32	1.09
17583217--17583250	15	2.3	15	94	0	59	38	20	14	26	1.91
17583411--17583478	16	4.1	16	73	17	59	23	2	1	72	1.07
17583383--17583477	22	4.4	21	71	19	70	22	4	2	71	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17583742--17583783	20	2.1	20	86	8	59	69	23	2	4	1.20
17586978--17587035	20	2.8	22	76	12	68	60	6	0	32	1.23
17586971--17587023	21	2.7	19	75	11	52	62	5	1	30	1.29
17589174--17589205	12	2.7	12	95	0	55	9	9	0	81	0.88
17589248--17589332	41	2.1	41	90	0	134	32	16	17	32	1.93
17589289--17589392	51	2.0	51	88	0	154	38	18	11	31	1.86
17589348--17589428	36	2.2	36	82	4	92	37	18	12	32	1.88
17589467--17590047	187	3.0	185	77	12	445	32	15	16	35	1.90
17589657--17590047	105	3.7	105	84	3	484	32	14	16	36	1.90
17589657--17590047	210	1.9	209	86	0	566	32	14	16	36	1.90
17590666--17590750	41	2.1	41	82	4	100	34	9	20	36	1.85
17590688--17590765	41	1.9	41	81	5	95	34	7	19	38	1.80
17595925--17595996	31	2.2	32	83	11	94	40	11	8	40	1.71
17596106--17596138	15	2.1	16	88	5	50	45	0	0	54	0.99
17596155--17596190	17	2.1	17	90	10	56	41	0	0	58	0.98
17596159--17596198	18	2.2	18	86	8	55	50	0	0	50	1.00
17596237--17596269	16	1.9	18	88	11	52	66	3	0	30	1.06
17606203--17606264	28	2.2	28	80	13	74	41	0	56	1	1.09
17606960--17606999	18	2.3	18	91	4	64	75	0	0	25	0.81
17606956--17607000	17	2.8	17	83	6	58	73	0	0	26	0.84
17607032--17607065	2	17.5	2	87	6	52	47	0	0	52	1.00
17607009--17607072	29	2.2	29	84	13	80	45	0	3	51	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17608600--17608642	22	2.0	22	100	0	86	13	9	9	67	1.42
17612288--17612318	10	3.1	10	95	0	53	0	0	12	87	0.55
17614131--17614186	28	2.0	28	92	0	94	28	14	17	39	1.89
17624263--17624293	16	1.9	16	100	0	62	38	3	32	25	1.72
17627378--17627449	37	1.9	37	88	0	108	38	4	2	54	1.34
17628744--17628792	23	2.1	24	88	3	73	20	16	8	55	1.66
17633424--17633466	19	2.2	20	88	8	63	25	2	4	67	1.22
17639657--17639863	104	2.0	104	86	3	292	27	16	14	41	1.87
17641145--17641184	12	3.2	12	82	6	53	37	2	2	57	1.26
17642204--17642236	10	3.3	10	91	0	57	39	0	12	48	1.40
17648891--17648928	12	3.2	12	88	0	58	31	0	7	60	1.25
17648984--17649023	19	2.1	19	85	0	53	47	12	7	32	1.69
17649209--17649244	16	2.2	16	90	0	54	83	5	0	11	0.80
17649205--17649273	26	2.7	25	81	4	84	82	5	1	10	0.89
17649205--17649243	5	7.6	5	85	5	51	82	5	0	12	0.83
17649209--17649274	10	6.4	10	75	6	60	83	6	1	9	0.87
17651023--17651528	84	6.1	83	73	7	285	38	14	14	32	1.87
17651369--17651546	83	2.1	83	84	9	229	42	11	12	33	1.79
17651796--17651842	18	2.6	18	86	0	58	42	14	17	25	1.87
17656213--17656277	33	2.0	32	85	8	87	32	7	3	56	1.43
17656464--17656602	70	2.0	70	92	0	233	37	12	17	31	1.88
17657498--17657545	3	16.0	3	95	0	87	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17658807--17658853	13	3.5	13	82	2	58	63	0	6	29	1.19
17669726--17669765	19	2.1	19	85	0	53	52	12	2	32	1.52
17669696--17669821	20	6.4	20	66	27	58	53	11	4	29	1.57
17669900--17669974	8	9.6	8	73	12	59	82	2	2	12	0.87
17669911--17669974	15	4.8	13	77	18	62	82	3	1	12	0.85
17669926--17669986	13	4.5	13	77	6	59	85	3	3	8	0.82
17669902--17669980	23	3.4	23	81	10	81	82	2	3	11	0.90
17669900--17669979	27	2.9	26	77	14	81	82	2	3	11	0.89
17671558--17671754	83	2.4	83	80	2	216	39	15	13	31	1.86
17679523--17679553	15	2.1	15	93	0	53	9	0	38	51	1.35
17679599--17679649	14	3.8	13	73	17	50	13	0	33	52	1.41
17679655--17679778	43	2.9	42	79	4	115	21	1	27	49	1.59
17679677--17679778	14	7.2	14	74	6	89	19	0	29	50	1.55
17679676--17679778	29	3.7	27	76	7	80	20	0	29	49	1.55
17679907--17679979	3	25.3	3	76	18	75	28	0	2	68	1.03
17680095--17680149	3	18.0	3	83	10	67	29	0	3	67	1.08
17681135--17681161	12	2.2	12	100	0	54	22	7	37	33	1.82
17681489--17681526	19	2.0	20	94	5	69	5	13	0	81	0.85
17681813--17681915	37	2.8	37	81	0	116	46	8	20	24	1.78
17681921--17681985	22	3.0	22	90	0	103	36	20	16	26	1.93
17681894--17682103	93	2.2	93	85	2	278	35	18	20	25	1.95
17682080--17682283	110	1.8	111	83	3	268	39	16	23	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17682343--17682415	22	3.3	22	78	1	83	35	16	17	30	1.92
17682474--17682524	22	2.3	22	89	3	75	31	13	25	29	1.94
17682678--17682722	23	2.0	22	91	4	72	31	6	24	37	1.81
17684722--17684772	24	2.1	24	96	0	93	17	19	13	49	1.80
17691353--17691467	30	3.8	31	73	10	87	25	0	26	47	1.52
17691453--17691495	22	2.0	22	90	0	68	18	0	30	51	1.47
17691468--17691551	14	5.9	14	67	15	55	20	1	27	51	1.55
17691672--17691744	3	25.7	3	77	15	75	28	0	2	68	1.03
17693231--17693290	11	5.8	10	73	11	50	6	11	0	81	0.86
17693234--17693290	30	1.9	30	86	13	82	7	10	0	82	0.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84