genome.fa.s157.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  38  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8960345--8960387	19	2.3	19	87	0	59	65	2	0	32	1.06
8960447--8960481	13	2.7	13	86	0	52	48	0	0	51	1.00
8962168--8962239	26	2.9	25	86	10	94	48	1	1	48	1.18
8962203--8962242	15	2.6	16	88	4	64	52	0	0	47	1.00
8962391--8962726	168	2.0	169	84	5	443	49	4	5	40	1.47
8962621--8962659	21	1.9	20	89	5	60	48	0	0	51	1.00
8965471--8965571	51	2.0	51	90	3	159	30	14	19	34	1.92
8969510--8969575	6	9.4	7	80	16	50	27	3	1	68	1.13
8969711--8969746	13	2.6	15	79	20	51	33	0	0	66	0.92
8972216--8972380	84	2.0	85	90	1	260	51	6	10	30	1.63
8976267--8976324	17	3.4	18	76	11	59	43	1	5	50	1.35
8978595--8978636	23	1.9	21	81	18	50	47	2	0	50	1.14
8981200--8981235	2	18.0	2	100	0	72	50	0	0	50	1.00
8981442--8981468	3	9.0	3	100	0	54	33	0	0	66	0.92
8982027--8982097	31	2.3	31	85	0	88	26	22	23	26	2.00
8985535--8985567	17	1.9	17	88	11	50	15	15	0	69	1.19
8990461--8990496	2	18.0	2	94	0	63	47	0	0	52	1.00
8990981--8991026	19	2.4	19	82	13	58	76	0	2	21	0.90
9004183--9004227	21	2.2	21	92	4	74	42	4	4	48	1.43
9004220--9004264	21	2.1	21	84	8	56	33	2	6	57	1.37
9004538--9004574	2	18.5	2	94	0	65	48	2	0	48	1.15
9006050--9006122	22	3.3	22	84	5	85	36	4	9	49	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9006182--9006240	22	2.8	21	78	2	64	42	8	6	42	1.61
9006259--9006317	11	5.4	11	80	8	57	42	3	1	52	1.28
9006249--9006317	22	3.1	22	81	6	59	42	4	2	50	1.37
9006259--9006318	22	2.7	22	84	5	77	41	5	1	51	1.33
9006474--9006557	23	3.7	22	76	9	80	38	10	2	48	1.51
9006563--9006643	22	3.7	22	78	6	101	38	8	7	45	1.63
9006542--9006629	44	2.0	43	89	6	133	38	9	5	46	1.59
9006552--9006665	44	2.6	44	83	5	133	38	6	7	48	1.55
9007190--9007235	2	23.0	2	100	0	92	50	0	0	50	1.00
9007564--9007654	47	1.9	48	86	2	130	46	9	4	39	1.57
9008606--9008638	2	16.5	2	100	0	66	48	0	0	51	1.00
9014939--9014964	11	2.4	11	100	0	52	50	15	0	34	1.45
9015394--9015477	28	2.9	28	76	13	82	39	1	1	58	1.14
9018992--9019017	2	13.0	2	100	0	52	50	0	0	50	1.00
9027893--9027933	21	2.0	21	85	9	57	51	0	0	48	1.00
9035069--9035114	2	23.0	2	100	0	92	0	50	0	50	1.00
9042806--9042844	17	2.3	17	86	0	51	48	0	2	48	1.15
9043363--9043400	17	2.1	18	85	9	51	42	0	2	55	1.14
9045515--9045561	2	23.5	2	100	0	94	51	0	0	48	1.00
9054165--9054214	15	3.3	15	94	0	91	40	0	42	18	1.50
9056569--9057147	289	2.0	288	93	1	980	26	16	16	40	1.90
9058252--9058286	18	1.9	18	88	0	52	37	2	28	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9059594--9059621	1	28.0	1	100	0	56	100	0	0	0	0.00
9062096--9062131	16	2.2	16	90	9	56	8	2	5	83	0.89
9062086--9062134	23	2.1	23	84	0	62	12	2	4	81	0.91
9062183--9062223	21	1.9	22	90	5	66	7	7	2	82	0.91
9062480--9062535	28	2.0	28	83	13	71	48	1	1	48	1.22
9062451--9062520	33	2.2	31	82	10	79	42	1	1	54	1.18
9062486--9062541	28	2.0	29	86	10	80	48	1	1	48	1.22
9063245--9063290	21	2.1	21	84	4	56	45	0	0	54	0.99
9063626--9063654	11	2.7	11	94	5	51	10	6	0	82	0.83
9063990--9064050	29	2.1	29	90	0	95	62	3	18	16	1.46
9064480--9064671	100	1.9	100	97	0	366	36	5	3	54	1.41
9065621--9065670	20	2.6	19	87	3	73	2	6	10	82	0.92
9073413--9073462	18	2.8	18	90	3	75	68	14	12	6	1.39
9074202--9074279	26	3.2	26	62	20	67	26	8	19	44	1.80
9074196--9074290	48	2.0	48	95	0	172	29	7	18	44	1.77
9076146--9076447	147	2.1	147	94	0	532	43	21	20	14	1.87
9088481--9088536	25	2.2	25	90	3	85	26	3	17	51	1.62
9088489--9088538	25	2.0	25	100	0	100	24	4	20	52	1.63
9089267--9089327	12	5.4	12	75	16	51	37	1	0	60	1.07
9089301--9089326	6	4.3	6	100	0	52	34	0	0	65	0.93
9090602--9090653	6	8.7	6	82	0	50	21	51	7	19	1.71
9097977--9098079	51	2.0	51	96	0	188	27	16	15	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9114429--9114462	3	11.7	3	87	6	52	32	0	2	64	1.08
9115993--9116032	21	1.9	21	89	0	62	45	0	0	55	0.99
9116583--9116629	18	2.8	17	77	6	51	38	4	0	57	1.18
9116658--9116695	14	2.6	14	87	4	58	44	0	0	55	0.99
9116683--9116734	26	2.0	27	85	11	72	48	0	3	48	1.20
9116768--9116801	16	2.1	16	89	10	52	70	0	0	29	0.87
9119312--9119383	25	2.8	26	79	12	69	51	2	4	41	1.35
9120419--9120459	3	13.7	3	100	0	82	31	0	0	68	0.90
9122135--9122185	21	2.4	21	81	15	61	49	0	0	50	1.00
9133201--9133258	29	2.0	29	89	0	89	44	5	24	25	1.74
9133681--9133724	15	2.9	15	80	12	63	20	20	22	36	1.95
9133686--9133734	15	3.3	15	79	0	53	26	20	20	32	1.97
9140891--9140927	18	2.2	17	86	13	51	48	2	0	48	1.15
9140883--9140960	37	2.1	37	81	13	88	48	3	2	44	1.34
9140892--9140988	37	2.6	36	81	17	99	46	4	1	48	1.28
9140937--9140974	19	2.0	20	89	5	60	50	2	2	44	1.30
9141070--9141165	26	3.7	26	76	17	92	47	0	1	51	1.07
9141091--9141132	13	3.2	13	74	12	50	50	0	0	50	1.00
9141085--9141153	25	2.8	26	82	10	83	49	0	0	50	1.00
9143225--9143316	33	2.8	33	77	9	98	41	1	1	56	1.13
9143399--9143451	11	4.5	11	78	17	52	43	5	1	49	1.37
9144928--9144964	19	1.9	19	89	10	58	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145101--9145143	16	2.9	14	77	16	50	37	0	2	60	1.10
9150496--9150567	36	2.0	37	91	2	119	23	20	16	38	1.92
9160641--9160677	5	7.6	5	93	6	67	0	56	0	43	0.99
9161349--9161378	2	15.0	2	100	0	60	50	0	0	50	1.00
9161802--9161857	17	3.2	17	70	20	53	35	0	0	64	0.94
9164993--9165052	3	20.3	3	96	3	113	66	0	0	33	0.92
9165111--9165147	3	12.3	3	100	0	74	67	0	0	32	0.91
9165279--9165332	14	3.8	14	78	4	54	53	22	1	22	1.55
9165322--9165397	29	2.6	29	79	4	82	48	28	1	21	1.58
9165357--9165419	29	2.2	29	88	5	92	46	30	3	20	1.66
9165364--9165434	29	2.4	29	80	2	79	45	33	4	16	1.67
9165436--9165520	14	5.9	14	66	15	57	50	28	0	21	1.49
9165357--9165563	30	7.2	29	75	9	138	47	30	1	19	1.60
9166585--9166679	47	2.0	47	93	0	163	22	21	9	47	1.79
9172155--9172248	8	12.0	8	76	13	54	82	6	5	5	0.93
9172157--9172201	20	2.3	20	88	3	65	88	6	2	2	0.66
9173783--9173823	18	2.3	18	82	0	55	26	26	12	34	1.92
9173921--9174007	41	2.1	41	81	10	106	34	14	17	33	1.91
9174042--9174356	128	2.4	129	82	8	367	35	14	14	35	1.87
9174567--9174898	131	2.5	130	80	8	350	25	15	17	41	1.89
9174798--9174846	22	2.2	22	85	0	62	32	18	16	32	1.93
9174564--9174937	132	2.9	130	78	6	391	24	16	17	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9175235--9175289	22	2.5	22	84	0	65	29	18	18	34	1.94
9175393--9175559	87	1.9	88	86	1	237	21	13	16	47	1.81
9175552--9175594	22	2.0	22	90	0	68	32	20	13	32	1.92
9175464--9175781	110	2.9	110	80	7	367	23	16	16	43	1.87
9175860--9175908	22	2.2	22	82	7	55	28	16	20	34	1.94
9176364--9176409	24	2.0	23	95	4	83	36	4	8	50	1.53
9176788--9176820	14	2.4	14	90	10	50	57	18	3	21	1.53
9176837--9176930	29	3.2	29	83	5	118	45	28	3	22	1.67
9176910--9177017	8	14.4	8	65	14	52	50	33	0	15	1.44
9176916--9177000	14	5.9	14	74	15	75	52	29	0	17	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84