genome.fa.s157.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  31  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7211314--7211339	13	2.0	13	100	0	52	15	23	23	38	1.92
7213575--7213619	15	3.1	15	93	3	74	86	11	2	0	0.65
7214572--7214600	2	14.5	2	100	0	58	0	48	0	51	1.00
7214600--7214625	2	13.0	2	100	0	52	50	0	0	50	1.00
7216193--7216266	33	2.3	34	83	9	100	25	1	25	47	1.60
7216215--7216286	33	2.2	33	92	0	117	25	0	27	47	1.52
7217521--7217578	23	2.5	23	85	0	71	34	6	41	17	1.76
7217795--7217854	31	2.0	28	84	9	75	38	0	0	61	0.96
7228807--7228832	1	26.0	1	100	0	52	100	0	0	0	0.00
7230081--7230139	23	2.5	24	77	5	66	49	3	1	45	1.28
7230484--7230537	17	3.2	18	87	7	69	53	1	0	44	1.11
7230496--7230545	8	6.0	8	88	6	73	52	0	0	48	1.00
7231189--7231263	34	2.3	32	81	6	87	40	2	10	46	1.53
7237253--7237300	24	2.0	25	83	4	62	58	0	0	41	0.98
7247753--7247792	14	2.9	14	88	7	55	62	0	2	35	1.09
7263637--7263670	5	7.0	5	86	6	52	82	0	17	0	0.67
7264399--7264458	15	4.2	15	79	12	81	33	41	10	15	1.80
7264436--7264488	12	4.4	12	81	9	54	35	35	11	16	1.85
7264444--7264490	6	7.8	6	90	0	76	36	34	14	14	1.88
7278084--7278292	105	2.0	105	93	0	355	36	11	21	31	1.88
7283303--7283356	14	3.7	15	78	11	60	51	0	0	48	1.00
7283302--7283365	29	2.3	27	79	15	76	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7293067--7293107	19	2.2	19	87	12	59	78	4	4	12	1.07
7293613--7293747	52	2.6	50	78	8	128	39	16	6	37	1.75
7299103--7299136	12	2.8	12	90	4	50	44	0	0	55	0.99
7300371--7300424	23	2.3	23	78	12	58	57	1	1	38	1.20
7312759--7313031	90	3.0	90	90	4	424	26	18	18	36	1.94
7318211--7318255	22	2.1	22	87	4	65	48	0	2	48	1.13
7318943--7319005	9	7.0	9	77	0	63	65	14	1	19	1.35
7318946--7319005	18	3.3	18	83	0	75	65	15	1	18	1.36
7318970--7319016	24	2.0	24	87	8	69	65	19	0	14	1.26
7318943--7319017	27	2.8	27	85	4	89	64	17	1	17	1.37
7320971--7321020	13	3.9	13	82	10	59	30	2	2	66	1.14
7320971--7321020	25	2.0	25	84	4	64	30	2	2	66	1.14
7322025--7322058	4	8.5	4	86	0	50	82	0	17	0	0.67
7322022--7322058	8	4.5	8	93	3	56	81	0	18	0	0.70
7330007--7330048	21	2.0	22	85	4	59	52	2	7	38	1.42
7330061--7330098	17	2.1	18	85	9	51	36	0	7	55	1.29
7332709--7332746	15	2.5	15	91	0	58	57	0	0	42	0.98
7332718--7332779	20	3.2	20	71	13	58	51	0	4	43	1.23
7333611--7333660	21	2.3	23	86	6	77	52	0	0	48	1.00
7333610--7333663	22	2.5	20	85	11	72	51	0	0	48	1.00
7333615--7333663	23	2.1	23	88	7	73	48	0	0	51	1.00
7333648--7333691	8	5.5	8	86	0	61	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7336026--7336086	22	2.9	21	72	18	54	59	9	11	19	1.60
7337229--7337274	21	2.2	21	84	3	67	39	0	4	56	1.19
7337358--7337385	6	4.7	6	100	0	56	46	0	0	53	1.00
7340236--7340308	37	2.0	37	88	0	110	27	10	20	41	1.86
7343700--7343743	20	2.2	20	96	4	81	47	0	0	52	1.00
7353128--7353176	25	2.0	25	84	11	66	24	4	18	53	1.62
7354093--7354367	138	2.0	138	89	0	424	30	19	21	28	1.97
7355345--7355387	20	2.2	20	95	0	77	48	0	16	34	1.46
7355589--7355660	34	2.2	33	84	2	90	36	5	8	50	1.56
7355926--7355950	12	2.1	12	100	0	50	16	20	8	56	1.65
7365789--7365849	25	2.4	25	84	13	72	45	0	1	52	1.10
7365768--7365831	34	1.9	33	84	9	85	37	1	1	59	1.16
7366261--7366310	23	2.2	23	85	7	66	44	0	4	52	1.20
7366304--7366352	22	2.1	24	82	17	59	51	2	0	46	1.12
7366605--7366648	12	3.7	12	79	8	54	63	0	0	36	0.95
7384153--7384196	22	2.0	22	86	0	61	36	9	13	40	1.76
7386428--7386471	22	2.0	22	95	0	79	31	11	13	43	1.80
7386851--7386885	18	1.9	18	88	0	52	22	14	25	37	1.92
7390328--7390371	22	2.0	22	95	0	79	31	11	13	43	1.80
7407929--7407968	18	2.2	19	86	4	55	52	12	5	30	1.60
7410733--7410770	20	1.9	20	89	10	60	63	0	0	36	0.95
7410819--7410860	13	3.2	13	83	6	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7410944--7410991	12	4.0	12	78	10	53	33	2	0	64	1.05
7410943--7411001	24	2.5	24	83	10	68	33	1	0	64	1.04
7414983--7415052	24	2.9	24	79	10	72	44	0	4	51	1.21
7415218--7415252	16	2.2	16	94	0	61	31	5	5	57	1.46
7415278--7415424	61	2.4	61	79	7	181	42	4	13	38	1.65
7416332--7416419	41	2.1	41	95	0	158	36	7	1	54	1.37
7416979--7417005	13	2.1	13	100	0	54	7	0	37	55	1.28
7416947--7417005	21	2.8	19	76	16	55	15	0	28	55	1.40
7416995--7417137	28	4.9	29	82	6	137	20	1	28	48	1.58
7416995--7417137	58	2.5	58	86	4	182	20	1	28	48	1.58
7417070--7417121	14	3.7	14	73	0	50	21	1	25	51	1.57
7417112--7417147	16	2.2	16	90	9	56	22	0	33	44	1.53
7417144--7417190	14	3.4	14	78	0	58	21	2	23	53	1.57
7417201--7417242	21	2.0	22	90	4	68	11	2	28	57	1.47
7417257--7417500	30	8.6	30	74	16	139	21	0	30	47	1.55
7417270--7417347	14	5.4	14	72	11	59	19	0	30	50	1.48
7417321--7417365	21	2.1	21	87	0	63	20	0	24	55	1.43
7417300--7417351	14	3.7	14	81	0	68	19	0	26	53	1.45
7417327--7417372	21	2.2	21	92	0	74	13	0	32	54	1.39
7417095--7417391	126	2.4	124	79	8	307	21	1	29	48	1.57
7417345--7417486	60	2.4	60	85	2	178	23	0	28	47	1.57
7417439--7417506	14	4.8	13	74	16	55	22	0	29	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7417977--7418002	10	2.6	10	100	0	52	61	0	0	38	0.96
7418650--7418733	22	3.6	24	83	12	104	13	9	47	29	1.74
7418650--7418724	24	3.2	24	85	11	100	9	9	49	32	1.67
7419524--7419606	33	2.5	34	86	9	111	28	14	25	31	1.95
7419875--7419962	22	4.0	23	78	8	76	26	20	19	34	1.96
7419929--7419977	22	2.2	22	85	7	64	24	20	20	34	1.96
7420919--7421006	42	2.0	43	84	8	115	6	20	1	71	1.15
7427308--7427475	30	5.8	28	73	8	113	22	2	28	46	1.66
7427340--7427815	30	15.8	30	75	11	377	21	1	30	47	1.60
7427412--7427539	7	17.4	7	68	18	55	17	0	34	48	1.47
7427340--7427815	88	5.3	89	75	11	389	21	1	30	47	1.60
7427415--7427694	155	1.8	155	85	3	393	19	1	32	46	1.59
7427583--7427664	14	5.7	14	76	11	76	17	2	31	48	1.60
7427655--7427710	16	3.6	16	71	9	62	25	0	30	44	1.54
7427595--7427858	90	3.0	88	79	9	277	22	0	29	46	1.57
7427308--7427830	58	8.7	58	76	11	308	21	1	30	46	1.62
7428292--7428317	3	8.7	3	100	0	52	69	0	0	30	0.89
7429352--7429392	16	2.5	18	85	14	54	41	0	0	58	0.98
7429640--7429698	23	2.5	24	81	10	68	55	1	1	40	1.20
7429649--7429698	23	2.2	23	89	7	75	60	2	0	38	1.09
7429649--7429708	26	2.5	24	86	8	77	56	1	0	41	1.09
7429922--7429966	2	22.5	2	90	0	72	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7430314--7430373	25	2.4	25	86	5	77	53	0	0	46	1.00
7430313--7430370	9	6.6	9	72	18	50	51	0	0	48	1.00
7430447--7430656	15	14.5	14	69	20	114	38	1	1	58	1.18
7430457--7430686	18	13.0	18	69	21	84	40	1	1	55	1.20
7430457--7430695	36	6.8	37	72	19	174	41	1	1	55	1.20
7430672--7430722	27	2.0	26	88	7	77	49	3	1	45	1.32
7433985--7434009	8	3.1	8	100	0	50	24	0	0	76	0.80
7438484--7438546	31	2.0	31	87	0	90	55	4	1	38	1.31
7446513--7446560	25	1.9	25	82	0	60	43	33	2	20	1.64
7447372--7447770	186	2.1	186	85	4	552	42	9	12	35	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84