genome.fa.s157.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  77  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16655990--16656059	24	2.6	28	73	19	85	42	0	2	54	1.15
16657052--16657092	5	8.2	5	83	0	55	2	34	0	63	1.08
16657043--16657090	10	4.8	10	86	0	51	6	29	0	64	1.18
16657127--16657199	30	2.4	29	77	6	74	39	16	2	41	1.63
16657463--16657495	15	2.3	15	89	5	50	36	15	0	48	1.45
16660551--16660638	30	2.9	30	75	9	81	37	14	3	44	1.62
16661519--16661571	26	2.1	26	82	3	63	35	1	9	52	1.45
16661938--16662356	208	2.0	208	99	0	829	39	9	21	28	1.85
16662657--16662717	26	2.3	26	91	5	97	40	0	16	42	1.48
16663915--16663976	32	1.9	32	96	0	115	46	4	12	35	1.64
16664574--16664631	25	2.2	25	84	12	71	70	5	0	24	1.07
16665337--16665388	21	2.7	20	85	8	63	26	1	3	67	1.18
16665463--16665509	24	1.9	25	91	4	78	27	0	10	61	1.29
16665620--16665767	9	16.6	9	69	9	72	30	2	6	60	1.35
16665726--16665767	19	2.2	19	87	8	59	30	0	2	66	1.04
16668220--16668259	18	2.2	18	86	8	55	82	0	15	2	0.77
16674650--16674684	13	2.7	13	90	0	61	68	0	0	31	0.90
16674755--16674807	26	2.0	28	85	7	74	52	1	0	45	1.11
16684117--16684156	19	2.0	20	85	4	55	40	5	10	45	1.60
16696102--16696152	24	2.1	24	96	0	93	68	9	0	21	1.18
16700177--16700797	313	2.0	313	85	2	854	41	14	10	32	1.81
16700873--16701023	74	2.0	77	90	3	245	44	6	3	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16705845--16705875	15	2.1	15	100	0	62	22	0	0	77	0.77
16706517--16706576	23	2.5	24	78	10	61	33	6	3	56	1.42
16706688--16706735	23	2.1	24	88	7	73	50	0	0	50	1.00
16706840--16706893	24	2.3	24	80	3	65	53	1	7	37	1.40
16707100--16707152	18	2.9	17	78	10	52	64	0	7	28	1.21
16719927--16719974	22	2.2	21	85	10	62	45	0	0	54	0.99
16720162--16720210	12	4.2	12	73	19	50	38	0	2	59	1.09
16720160--16720210	16	2.9	18	75	22	54	39	0	1	58	1.09
16726087--16726132	23	2.0	23	83	8	58	54	6	13	26	1.62
16727337--16727511	88	2.0	88	95	0	314	42	14	9	32	1.79
16729794--16729819	3	8.7	3	100	0	52	65	0	34	0	0.93
16730364--16730428	34	1.9	32	85	14	87	46	4	12	36	1.62
16730439--16730486	24	2.0	25	87	4	71	54	6	2	37	1.38
16731400--16731491	45	2.0	46	91	2	150	48	8	8	33	1.65
16732653--16732704	25	2.0	26	82	10	63	23	7	1	67	1.27
16733112--16733296	22	8.5	22	71	17	113	47	1	1	50	1.15
16733142--16733269	15	8.3	15	68	24	72	46	0	0	52	1.11
16733159--16733260	18	5.3	18	69	17	53	46	0	0	51	1.14
16733156--16733218	33	1.9	33	83	6	83	46	1	1	50	1.20
16733219--16733300	36	2.2	38	89	4	123	51	0	0	48	1.00
16735652--16735678	3	9.0	3	100	0	54	33	0	0	66	0.92
16738086--16738111	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16745933--16745967	11	3.0	12	83	8	54	5	11	8	74	1.22
16749092--16749153	19	3.5	19	66	22	53	43	3	0	53	1.17
16749089--16749153	33	2.0	33	90	0	103	43	3	0	53	1.16
16749153--16749183	15	2.1	15	93	0	53	38	9	0	51	1.35
16752233--16752292	25	2.4	25	88	0	93	25	20	28	26	1.99
16754248--16754286	15	2.6	14	84	15	51	48	2	2	46	1.29
16758221--16758279	31	1.9	31	96	0	109	33	18	20	27	1.96
16767263--16767288	2	13.0	2	100	0	52	50	0	0	50	1.00
16769141--16769741	256	2.3	254	89	4	902	38	22	13	25	1.90
16775928--16776126	101	2.0	101	97	0	380	43	15	16	25	1.87
16779432--16779461	15	2.0	15	100	0	60	33	26	13	26	1.93
16781793--16781827	18	1.9	18	88	0	52	51	8	11	28	1.67
16783567--16783705	63	2.2	62	81	12	151	33	13	15	37	1.86
16783990--16784059	35	2.0	35	82	0	86	37	11	14	37	1.82
16787729--16787976	62	4.0	60	72	14	189	40	12	12	33	1.82
16788084--16788499	190	2.2	189	78	6	421	41	9	11	37	1.74
16796360--16796437	32	2.4	32	80	4	86	30	2	8	57	1.43
16796382--16796472	19	4.7	19	71	11	78	28	0	10	60	1.31
16797605--16797698	42	2.2	42	92	0	152	27	12	10	48	1.74
16797611--16797674	19	3.2	19	68	23	58	29	12	12	45	1.79
16797622--16797724	23	4.7	22	70	20	65	29	12	8	49	1.70
16797699--16797784	41	2.1	41	82	10	104	32	5	4	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16797755--16797880	32	3.9	32	78	7	130	33	5	8	52	1.56
16797719--16797799	20	4.1	19	71	10	56	32	4	4	58	1.41
16797855--16797909	20	2.8	20	80	8	67	32	3	12	50	1.58
16797922--16797994	25	3.0	25	76	6	69	26	6	13	53	1.65
16797908--16798037	24	5.1	24	70	18	93	27	5	13	53	1.62
16798046--16798084	18	2.2	18	90	0	60	38	5	5	51	1.46
16798060--16798194	69	2.0	69	88	5	202	31	4	11	53	1.56
16798183--16798245	16	3.4	16	70	29	54	28	6	17	47	1.72
16798183--16798270	40	2.2	40	91	4	142	31	5	17	45	1.71
16800117--16800145	9	3.0	10	90	10	51	79	0	0	20	0.74
16802200--16802295	46	2.1	44	80	3	111	51	7	14	27	1.69
16803074--16803121	14	3.3	13	78	21	51	41	4	8	45	1.53
16803113--16803326	56	3.8	56	79	1	223	46	7	11	34	1.68
16803524--16803732	59	3.5	59	82	1	247	46	4	11	37	1.60
16807070--16807309	18	13.8	18	71	19	174	54	1	0	43	1.14
16807068--16807327	67	3.9	67	72	17	218	54	1	0	43	1.13
16807113--16807327	41	4.9	41	74	17	148	54	0	0	43	1.12
16807143--16807283	34	4.3	31	71	22	101	55	0	0	43	1.10
16807107--16807323	35	6.1	36	73	20	140	55	0	0	42	1.12
16807172--16807285	28	3.7	30	78	15	133	57	0	0	42	1.05
16807257--16807342	22	4.1	20	74	11	66	61	0	1	37	1.04
16807172--16807350	93	1.9	93	81	13	217	56	0	1	41	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16807353--16807446	19	5.2	18	68	12	50	42	2	2	53	1.25
16807580--16807639	26	2.3	26	82	5	68	46	0	8	45	1.33
16811051--16811272	60	3.7	60	84	6	243	38	12	4	45	1.61
16812062--16812130	25	2.6	25	86	6	66	69	4	4	21	1.24
16812081--16812127	14	3.6	14	77	16	64	68	0	4	27	1.08
16812075--16812181	25	4.4	24	78	13	96	68	0	2	28	1.10
16812094--16812181	11	7.5	11	70	13	50	68	1	2	28	1.09
16812367--16812576	44	4.8	44	78	11	207	43	20	13	22	1.87
16812595--16812718	41	3.0	40	84	6	167	41	19	10	29	1.84
16813717--16813791	11	7.1	10	76	16	62	8	6	1	84	0.85
16813720--16813784	23	2.7	23	83	4	76	7	7	1	83	0.88
16813717--16813791	8	9.4	8	72	13	57	8	6	1	84	0.85
16813720--16813792	24	3.0	24	78	8	76	8	8	1	82	0.91
16824307--16824472	60	2.7	61	85	5	221	36	11	3	49	1.54
16824563--16824596	16	2.1	17	88	5	52	82	0	2	14	0.79
16824623--16824660	3	12.7	3	100	0	76	68	0	0	31	0.90
16825107--16825149	22	1.9	23	90	4	70	65	11	0	23	1.25
16825407--16825523	8	16.4	7	67	21	50	66	0	2	29	1.11
16825407--16825457	21	2.4	22	80	9	61	64	1	3	29	1.22
16825409--16825512	28	3.9	28	78	13	112	64	0	2	31	1.15
16825429--16825510	26	3.2	24	73	23	69	63	1	2	32	1.15
16825475--16825523	19	2.6	19	84	9	64	73	0	0	26	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16825447--16825522	22	3.3	23	73	10	59	68	0	1	30	0.98
16827016--16827058	16	2.6	16	88	7	59	32	0	0	67	0.91
16827022--16827070	17	2.9	17	87	3	64	40	0	0	59	0.98
16828261--16828312	15	3.4	15	86	5	77	7	11	3	76	1.12
16831523--16831553	15	2.1	15	93	0	53	32	12	9	45	1.75
16831817--16831875	25	2.4	25	80	5	66	32	1	1	64	1.13
16833982--16834220	129	1.9	128	92	4	401	41	8	7	42	1.62
16835342--16835399	30	1.9	30	89	0	89	37	5	5	51	1.46
16835792--16835836	22	2.0	22	86	0	63	28	0	2	68	1.01
16835791--16835836	17	2.7	18	83	10	60	28	0	4	67	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84