genome.fa.s157.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  41  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9653509--9653558	16	3.4	16	73	21	63	16	10	16	58	1.63
9656066--9656129	16	3.9	16	71	21	53	34	3	0	62	1.11
9656097--9656129	15	2.3	15	89	5	50	30	0	0	69	0.88
9656072--9656129	30	1.9	30	83	13	75	31	3	0	65	1.09
9656094--9656142	14	3.6	14	79	15	50	30	0	2	67	1.02
9658199--9658224	8	3.2	8	100	0	52	11	11	26	50	1.73
9660641--9660676	18	2.1	17	89	5	54	16	2	25	55	1.55
9661296--9661342	12	4.0	12	75	5	51	59	0	0	40	0.97
9662169--9662218	20	2.5	19	78	9	55	60	0	0	40	0.97
9670318--9670350	12	2.8	12	90	9	50	84	3	9	3	0.82
9671812--9671858	19	2.5	19	80	10	60	65	0	0	34	0.93
9672117--9672141	13	1.9	13	100	0	50	52	0	8	40	1.31
9672799--9672845	14	3.3	14	85	5	67	53	0	0	46	1.00
9672839--9672874	18	2.1	17	89	5	54	58	2	0	38	1.13
9672937--9672966	13	2.4	13	94	5	53	36	0	0	63	0.95
9673824--9673894	20	3.5	20	70	12	54	57	2	1	38	1.22
9677843--9677867	2	12.5	2	100	0	50	48	0	0	52	1.00
9684273--9684312	21	1.9	21	84	0	53	17	25	45	12	1.83
9685157--9685228	24	3.0	22	74	21	65	50	0	0	50	1.00
9685152--9685233	23	3.3	26	70	26	70	48	0	0	51	1.00
9685158--9685232	22	3.1	23	77	17	73	50	0	0	49	1.00
9689550--9689591	20	2.0	21	90	4	68	50	0	19	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9698709--9698736	2	14.0	2	100	0	56	50	0	0	50	1.00
9701686--9701729	18	2.4	19	81	11	56	18	0	22	59	1.38
9707595--9707621	14	1.9	14	100	0	54	37	0	14	48	1.45
9711076--9711112	20	1.9	20	94	5	67	21	0	5	72	1.04
9715465--9715490	3	8.7	3	100	0	52	30	0	0	69	0.89
9717865--9717902	9	4.2	9	86	0	58	55	0	44	0	0.99
9717859--9717920	21	3.0	21	80	4	63	50	1	45	3	1.27
9717856--9717893	6	6.3	6	93	0	67	52	0	47	0	1.00
9722950--9723135	3	62.3	3	79	9	175	33	0	6	59	1.27
9723242--9723273	16	2.0	16	100	0	64	50	25	6	18	1.70
9723935--9723978	18	2.4	18	85	10	63	18	2	2	77	0.98
9723973--9724020	22	2.2	22	85	7	62	14	0	8	77	0.99
9724084--9724126	17	2.6	17	85	3	61	46	0	6	46	1.30
9732107--9732159	25	2.1	26	92	3	90	49	30	3	16	1.64
9732683--9732710	14	2.0	14	100	0	56	14	14	14	57	1.66
9735763--9735804	12	3.5	12	83	0	57	26	16	23	33	1.96
9735763--9735811	24	2.0	24	84	0	62	28	16	22	32	1.95
9736453--9736480	12	2.3	12	100	0	56	7	0	7	85	0.73
9737100--9737146	4	11.5	4	84	4	58	74	4	2	19	1.09
9737996--9738043	16	2.8	17	81	6	62	52	10	10	27	1.68
9737997--9738108	37	3.1	37	83	6	124	45	10	14	29	1.78
9737997--9738135	18	7.7	18	72	13	99	44	11	15	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9737997--9738154	37	4.4	36	77	15	105	43	12	15	28	1.83
9738335--9738414	34	2.4	33	85	4	99	43	11	13	31	1.79
9738320--9738453	17	8.1	17	68	15	77	41	10	11	36	1.76
9738745--9738957	109	2.0	108	86	4	304	38	15	10	35	1.82
9738948--9739103	24	6.5	24	68	17	92	38	14	7	39	1.74
9738961--9739084	51	2.6	45	78	14	158	42	15	7	34	1.74
9738986--9739083	51	1.9	51	93	0	169	42	16	8	32	1.77
9740224--9740269	19	2.5	19	89	6	69	15	21	0	63	1.31
9740286--9740331	23	2.0	24	91	4	76	8	10	0	80	0.91
9740217--9740332	9	13.4	9	68	17	52	12	18	0	67	1.28
9746125--9746192	30	2.3	30	100	0	136	32	25	19	23	1.97
9746155--9747945	956	1.9	953	89	1	2791	30	21	16	32	1.95
9760265--9760301	17	2.1	19	85	10	51	59	2	0	37	1.12
9762686--9762720	2	17.0	2	94	5	61	48	2	0	48	1.16
9762955--9762979	2	12.5	2	100	0	50	52	0	0	48	1.00
9763121--9763166	21	2.1	21	84	4	56	43	2	0	54	1.12
9763129--9763189	30	2.0	31	84	9	81	47	3	0	49	1.18
9765940--9766203	15	16.6	17	69	20	98	57	1	1	40	1.15
9765940--9766227	18	18.2	15	70	15	165	56	1	1	40	1.18
9766359--9766440	25	3.2	26	80	11	89	46	1	0	52	1.08
9766367--9766430	26	2.5	26	87	5	87	48	1	0	50	1.10
9766319--9766422	17	6.6	16	67	23	53	47	0	0	51	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9766541--9766584	14	3.0	14	90	6	61	43	2	2	52	1.26
9768440--9768477	12	3.3	12	89	7	53	84	5	5	5	0.88
9769375--9769420	24	1.9	24	82	8	58	54	0	0	45	0.99
9771732--9771791	22	2.7	21	79	10	57	58	5	1	35	1.30
9771749--9771790	22	1.9	21	90	9	66	54	7	0	38	1.28
9772210--9772255	15	3.0	15	87	3	56	45	2	2	50	1.26
9772534--9772623	34	2.7	34	78	13	98	51	2	0	46	1.13
9773858--9773882	2	12.5	2	100	0	50	52	0	0	48	1.00
9779143--9779175	14	2.4	14	90	10	50	15	0	6	78	0.93
9779722--9779754	9	3.8	9	88	8	50	84	0	3	12	0.72
9779725--9779754	8	3.6	8	91	8	51	86	0	3	10	0.67
9779724--9779768	20	2.4	18	85	7	54	84	2	6	6	0.85
9780543--9780584	20	2.1	21	86	8	61	66	0	2	30	1.04
9781468--9781495	14	2.0	14	100	0	56	14	0	0	85	0.59
9783159--9783197	8	4.8	8	87	9	53	23	2	0	74	0.94
9783159--9783197	17	2.4	17	84	16	55	23	2	0	74	0.94
9783375--9783455	23	3.5	22	81	6	90	44	4	14	35	1.67
9783368--9783456	46	1.9	46	88	4	135	43	6	15	33	1.73
9785280--9785305	10	2.6	10	100	0	52	46	0	0	53	1.00
9785560--9785594	10	3.4	10	88	7	52	88	0	2	8	0.61
9796678--9797083	47	8.6	47	81	6	385	29	11	19	38	1.88
9796678--9797046	94	3.9	96	87	2	453	28	11	20	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9797007--9797146	44	3.2	43	83	7	160	32	11	15	41	1.82
9797314--9797363	4	11.8	4	83	12	55	20	2	0	78	0.86
9797314--9797363	21	2.3	21	86	10	66	20	2	0	78	0.86
9797336--9797368	17	1.9	17	100	0	66	12	6	0	81	0.85
9799101--9799126	10	2.6	10	100	0	52	46	0	0	53	1.00
9801214--9801252	20	2.0	20	85	10	53	56	5	23	15	1.59
9807267--9807300	2	17.0	2	93	0	59	47	0	0	52	1.00
9807599--9807677	7	11.1	7	79	17	76	39	3	0	56	1.17
9807596--9807675	24	3.1	28	77	20	93	40	5	0	55	1.22
9808174--9808205	13	2.3	15	89	10	50	65	0	0	34	0.93
9808344--9808425	12	6.9	12	72	13	62	45	2	1	51	1.22
9808346--9808456	45	2.4	48	82	8	122	44	3	0	51	1.25
9808943--9808975	15	2.1	16	88	5	50	45	3	3	48	1.33
9809888--9809937	24	2.1	23	85	3	64	42	0	2	56	1.11
9809789--9809947	62	2.5	61	75	9	151	43	3	8	44	1.52
9811392--9811428	19	1.9	19	94	0	65	40	10	10	37	1.75
9818593--9818681	40	2.2	40	88	4	126	37	30	6	25	1.82
9818629--9818874	80	3.1	80	83	2	287	42	25	8	23	1.81
9820323--9820523	62	3.2	60	72	10	163	41	8	11	38	1.72
9819339--9820558	606	2.0	608	92	1	2011	40	10	12	35	1.78
9827100--9827279	99	1.8	100	81	1	227	40	19	13	26	1.88
9844058--9844109	21	2.5	22	93	6	90	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9844666--9844718	23	2.3	23	80	3	63	41	0	3	54	1.18
9844683--9844725	7	5.9	7	89	10	68	41	0	0	58	0.98
9847492--9847526	2	17.5	2	100	0	70	48	0	0	51	1.00
9848517--9848544	14	2.0	14	100	0	56	35	7	21	35	1.81
9851696--9851728	2	17.0	2	87	6	50	45	0	3	51	1.16
9854268--9854323	29	2.0	28	82	10	69	42	0	8	48	1.34
9861563--9861611	22	2.2	22	82	13	57	22	2	6	69	1.21
9870740--9870773	17	2.0	17	100	0	68	41	17	17	23	1.90
9876681--9876705	2	12.5	2	100	0	50	52	0	0	48	1.00
9877556--9877610	29	1.9	28	85	3	74	40	7	1	50	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84