genome.fa.s157.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  9  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1357368--1357734	85	4.3	85	87	4	494	38	19	16	25	1.92
1357368--1357746	128	3.0	129	86	3	484	39	19	16	24	1.91
1358736--1358819	8	10.2	8	77	22	86	10	14	0	75	1.06
1358736--1358809	7	10.3	7	76	22	66	10	13	0	75	1.04
1358736--1358798	15	4.1	15	82	17	85	11	14	0	74	1.07
1358741--1358798	22	2.5	23	94	5	100	10	13	0	75	1.04
1358723--1358821	19	5.0	20	73	20	84	11	16	0	72	1.11
1358729--1358820	28	3.2	28	82	10	114	10	14	0	75	1.06
1369311--1369345	17	2.0	17	88	5	52	51	11	0	37	1.38
1369324--1369364	15	2.6	15	88	7	55	53	2	2	41	1.27
1369234--1369567	122	2.8	121	85	5	453	39	11	6	42	1.67
1369602--1369747	14	9.9	15	65	20	51	72	4	2	21	1.11
1369607--1369663	20	2.9	18	76	20	53	78	3	3	14	1.01
1369591--1369660	28	2.5	27	78	15	72	80	2	4	12	0.98
1369689--1369719	3	10.7	3	93	6	55	70	0	0	29	0.87
1369695--1369735	12	3.4	12	84	15	50	73	0	0	26	0.84
1370555--1370660	39	2.6	42	80	12	114	60	2	4	32	1.32
1370570--1370659	43	2.1	42	85	6	119	61	3	4	31	1.32
1370676--1370747	5	14.0	5	76	13	58	77	2	1	18	0.96
1370685--1370746	11	5.3	11	78	14	70	79	3	0	17	0.87
1370685--1370746	6	10.5	6	80	11	67	79	3	0	17	0.87
1372587--1372845	140	1.8	139	81	8	319	44	15	7	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1375612--1375768	52	3.0	52	86	1	190	26	23	8	41	1.83
1375793--1375823	11	2.8	11	90	0	53	51	32	0	16	1.44
1376071--1376190	25	4.8	25	82	2	107	25	33	5	36	1.78
1376274--1376307	12	2.8	12	100	0	68	67	17	0	14	1.23
1376734--1376889	52	3.0	53	84	5	203	25	21	8	43	1.82
1376915--1376953	11	3.5	11	82	0	51	53	17	0	28	1.44
1377855--1378001	52	2.8	52	84	2	188	27	24	6	41	1.78
1378036--1378077	11	3.8	11	80	0	57	52	28	0	19	1.46
1378317--1378385	25	2.8	25	84	2	77	21	27	5	44	1.75
1378335--1378382	24	2.0	25	91	4	80	20	25	8	45	1.79
1379150--1379197	22	2.1	23	88	3	71	52	22	0	25	1.48
1380893--1381233	134	2.5	135	81	3	386	30	12	17	39	1.86
1387396--1387426	11	2.8	11	90	0	53	25	19	6	48	1.72
1388535--1388825	111	2.6	109	84	4	352	36	15	9	39	1.80
1391327--1391369	15	2.7	15	89	7	59	53	6	2	37	1.41
1399203--1399258	29	1.9	29	89	7	87	42	8	3	44	1.53
1401649--1401706	17	3.4	17	79	11	55	53	0	1	44	1.10
1402906--1402964	21	2.7	22	74	15	59	47	0	0	52	1.00
1403205--1403236	16	2.1	15	94	5	55	0	0	9	90	0.45
1403260--1403300	20	2.0	20	90	9	66	51	0	0	48	1.00
1403641--1403673	14	2.4	14	90	5	50	24	0	0	75	0.80
1404583--1404618	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1407113--1407148	16	2.2	17	90	5	56	52	0	0	47	1.00
1407110--1407148	17	2.3	16	86	8	51	53	0	0	46	1.00
1407778--1407846	35	2.0	35	94	0	120	49	7	13	30	1.68
1408394--1408456	24	2.8	22	72	13	56	58	0	3	38	1.14
1411095--1411123	12	2.3	13	94	5	51	44	3	0	51	1.18
1411660--1411690	13	2.4	13	88	0	53	29	12	25	32	1.93
1412598--1412675	38	2.1	38	90	0	120	19	21	10	48	1.78
1418003--1418032	2	15.0	2	92	0	51	46	0	0	53	1.00
1425503--1425580	39	2.0	39	97	0	147	44	1	20	33	1.60
1427150--1427253	30	3.5	30	72	16	90	39	8	2	49	1.49
1433371--1433416	23	1.9	25	86	8	69	65	0	2	32	1.05
1436508--1436552	18	2.5	18	88	0	72	53	0	0	46	1.00
1441157--1441189	7	4.7	7	96	0	57	30	39	15	15	1.88
1467851--1467882	2	16.5	2	93	6	57	50	0	0	50	1.00
1468265--1468302	19	2.0	19	85	10	51	13	7	5	73	1.22
1468329--1468370	17	2.3	18	84	8	50	33	2	0	64	1.07
1468328--1468371	18	2.4	18	85	11	54	31	2	0	65	1.05
1471550--1471595	2	23.0	2	90	0	74	47	2	2	47	1.26
1471894--1471927	14	2.4	14	85	0	50	88	2	0	8	0.62
1476334--1476364	16	1.9	16	100	0	62	61	0	0	38	0.96
1476496--1476526	15	2.1	15	93	0	53	48	0	0	51	1.00
1476491--1476529	20	2.0	20	89	0	60	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1476889--1476918	3	10.0	3	100	0	60	0	33	0	66	0.92
1478450--1478652	104	2.0	103	88	4	302	34	14	12	38	1.83
1479364--1479405	22	1.9	22	85	9	59	50	0	0	50	1.00
1479378--1479439	26	2.4	26	86	2	90	46	0	3	50	1.17
1479472--1479500	14	2.0	15	93	6	51	51	0	6	41	1.28
1489678--1489710	14	2.4	14	94	0	57	45	0	3	51	1.16
1490105--1490178	28	2.7	27	75	22	75	63	1	0	35	1.03
1496064--1496105	22	1.9	22	95	0	75	42	14	11	30	1.81
1504136--1504348	104	2.0	104	98	0	408	15	36	26	22	1.93
1511028--1511089	25	2.5	25	86	5	81	32	16	30	20	1.95
1511341--1511382	22	1.9	22	90	0	66	42	14	11	30	1.81
1526436--1526477	22	1.9	22	95	0	75	42	14	11	30	1.81
1530459--1530500	22	1.9	22	95	0	75	42	14	11	30	1.81
1537085--1537114	15	2.0	15	93	0	51	3	26	0	70	1.03
1542187--1542222	18	2.0	19	89	10	58	38	0	2	58	1.13
1548689--1548713	3	8.3	3	100	0	50	32	32	36	0	1.58
1552836--1552902	3	22.3	3	78	6	55	38	32	25	2	1.71
1562051--1562117	25	2.7	25	80	11	84	40	1	4	53	1.30
1564603--1564654	22	2.5	20	84	9	70	53	0	0	46	1.00
1564603--1564655	20	2.6	21	82	8	74	52	0	0	47	1.00
1567091--1567116	2	13.0	2	100	0	52	50	0	0	50	1.00
1578933--1578973	21	1.9	22	90	5	66	21	17	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1579978--1580064	45	1.9	45	95	0	156	50	11	5	32	1.62
1582506--1582566	28	2.2	28	84	0	86	44	6	0	49	1.28
1585224--1585751	265	2.0	265	83	2	675	39	10	8	41	1.70
1585788--1585834	19	2.3	20	75	7	51	57	6	0	36	1.24
1585886--1585926	21	2.0	21	85	0	55	46	4	4	43	1.46
1586874--1586906	7	4.7	7	100	0	66	45	0	0	54	0.99
1586872--1586924	21	2.5	20	79	8	61	49	0	0	50	1.00
1587010--1587039	14	2.1	14	93	0	51	40	0	0	60	0.97
1587157--1587208	20	2.6	20	100	0	104	55	0	0	44	0.99
1587974--1588005	16	2.1	16	88	11	50	62	12	3	21	1.43
1590682--1590881	105	1.9	105	90	2	321	37	13	11	38	1.81
1593509--1593565	23	2.4	24	88	5	80	52	0	3	43	1.18
1593525--1593574	23	2.2	22	86	13	66	54	0	4	42	1.19
1594621--1594657	15	2.5	15	91	8	58	56	0	0	43	0.99
1594629--1594670	21	2.0	21	90	0	66	61	0	0	38	0.96
1595481--1595513	2	16.5	2	100	0	66	51	0	0	48	1.00
1597288--1597326	12	3.2	12	85	0	60	53	2	2	41	1.28
1598305--1598356	17	3.1	16	72	22	52	23	0	5	71	1.07
1598761--1598860	16	6.4	16	71	15	66	47	31	1	21	1.58
1598777--1598866	46	1.9	47	86	8	130	47	27	1	23	1.58
1598762--1598868	15	6.9	15	71	13	65	46	29	0	22	1.58
1600533--1600581	22	2.3	21	93	6	89	44	0	14	40	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1604950--1604991	20	2.1	20	90	0	66	33	26	0	40	1.56
1605978--1606012	13	2.6	14	86	9	54	74	8	11	5	1.22
1607469--1608010	111	5.0	108	76	8	397	24	19	16	39	1.91
1607442--1608052	216	2.8	216	79	7	606	24	18	16	41	1.90
1608294--1608652	34	10.6	34	67	15	154	22	18	10	48	1.78
1608225--1608687	102	4.5	102	89	2	653	23	16	11	48	1.78
1608770--1608841	34	2.1	34	92	0	117	22	22	6	48	1.74
1609202--1609278	12	6.2	12	79	8	75	58	2	1	37	1.20
1609230--1609280	19	2.7	19	85	8	68	64	1	0	33	1.05
1609246--1609270	13	1.9	13	100	0	50	64	0	0	36	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84