genome.fa.s157.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  46  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10649610--10649646	17	2.2	17	90	0	56	16	0	2	81	0.81
10649611--10649680	12	5.8	12	77	3	59	20	2	1	75	1.00
10649623--10649678	4	13.8	4	79	9	60	21	3	0	75	0.96
10649710--10649954	123	2.0	121	79	10	257	43	8	11	35	1.73
10665530--10665569	19	1.9	19	85	14	53	15	5	2	77	1.04
10668352--10668396	19	2.4	18	82	10	54	28	4	4	62	1.34
10668681--10668722	21	2.0	22	86	13	61	9	2	7	80	0.97
10669932--10669968	17	2.3	17	90	9	60	5	10	8	75	1.17
10669926--10669969	15	2.6	18	82	13	58	6	11	6	75	1.20
10670389--10670443	23	2.3	24	87	3	76	18	10	1	69	1.27
10670693--10670727	14	2.4	15	90	4	54	14	5	0	80	0.89
10670692--10670729	15	2.5	16	83	12	53	15	5	0	78	0.91
10670947--10670975	2	14.5	2	100	0	58	48	0	0	51	1.00
10671047--10671093	21	2.1	24	84	11	64	48	2	0	48	1.13
10671911--10671940	15	2.0	15	100	0	60	13	26	6	53	1.64
10682956--10683153	99	2.0	99	94	0	351	23	5	32	38	1.78
10683446--10683531	30	2.8	31	82	3	102	32	10	20	36	1.87
10683829--10683927	52	1.9	52	89	0	153	46	7	20	26	1.76
10714171--10714208	19	2.0	19	94	0	67	44	0	5	50	1.24
10715556--10715598	7	6.3	7	84	15	54	41	0	0	58	0.98
10719485--10719542	27	2.1	28	90	3	91	46	8	13	31	1.74
10723571--10723630	31	1.9	31	86	6	86	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10724709--10724743	12	2.9	12	86	0	52	2	8	5	82	0.91
10725768--10725803	19	1.9	18	88	5	54	75	2	0	22	0.94
10727137--10727179	9	4.7	9	85	5	59	58	0	4	37	1.19
10727137--10727179	19	2.3	18	88	7	68	58	0	4	37	1.19
10730974--10731017	22	2.0	22	100	0	88	40	13	9	36	1.76
10731483--10731533	14	3.5	14	82	12	50	60	0	0	39	0.97
10731472--10731535	15	4.4	14	77	16	67	59	0	1	39	1.07
10731770--10731820	23	2.2	23	92	0	84	39	25	0	35	1.56
10733914--10734082	12	13.8	12	68	20	57	29	0	4	65	1.13
10733910--10734013	45	2.3	43	78	13	104	30	0	6	62	1.21
10733995--10734053	23	2.7	22	82	12	61	33	0	3	62	1.12
10734026--10734066	3	14.7	3	80	14	52	29	0	0	70	0.87
10733875--10734069	14	13.1	15	66	21	65	27	1	4	66	1.20
10734002--10734083	17	4.7	17	78	14	60	28	0	2	69	1.01
10734023--10734084	6	9.8	6	81	11	54	24	0	1	74	0.91
10734018--10734084	16	3.8	17	75	11	55	25	0	1	73	0.92
10734076--10734143	35	1.9	35	88	5	102	22	10	2	64	1.37
10735058--10735114	27	2.1	27	81	12	64	15	7	1	75	1.10
10735065--10735153	47	2.0	43	86	6	115	13	8	2	75	1.13
10735164--10735567	58	6.7	60	85	5	498	46	6	13	33	1.69
10735153--10735567	183	2.3	177	85	8	575	47	6	13	32	1.68
10745971--10746030	10	6.0	10	75	7	59	80	0	8	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10747054--10747226	41	4.1	42	90	3	260	22	14	24	38	1.92
10747236--10747275	8	4.9	8	82	17	55	90	10	0	0	0.47
10747234--10747275	10	4.5	10	80	14	54	90	9	0	0	0.45
10747236--10747264	15	1.9	15	100	0	58	89	10	0	0	0.48
10747234--10747275	18	2.4	18	92	4	68	90	9	0	0	0.45
10747548--10747596	15	3.2	15	78	21	57	34	0	4	61	1.15
10747550--10747612	23	2.9	22	80	13	60	33	0	3	63	1.10
10747550--10747605	17	3.1	17	75	24	53	33	0	3	62	1.12
10747580--10747638	6	9.2	6	80	12	55	22	0	1	76	0.88
10747561--10747638	20	4.0	19	78	8	68	25	0	2	71	0.98
10747630--10747698	36	1.9	36	88	5	104	21	10	2	65	1.36
10748586--10748629	13	3.6	12	82	8	54	9	4	2	84	0.85
10748674--10748729	21	2.7	20	83	13	60	10	8	1	78	1.03
10748656--10748707	27	1.9	27	85	14	72	11	7	1	78	1.02
10748653--10748744	48	2.0	46	87	8	132	13	8	2	76	1.11
10748744--10748854	58	1.9	58	94	0	195	48	7	11	32	1.67
10749886--10749972	45	1.9	44	88	4	129	49	8	6	35	1.59
10749885--10749986	44	2.3	45	84	6	136	52	6	5	34	1.52
10751640--10751673	15	2.3	15	89	0	50	67	5	2	23	1.26
10753524--10753597	34	2.2	33	86	9	98	17	5	20	56	1.60
10758436--10758472	2	18.5	2	100	0	74	51	0	0	48	1.00
10758659--10758692	13	2.6	13	90	0	50	55	26	0	17	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10758720--10758750	2	15.5	2	100	0	62	48	0	0	51	1.00
10767839--10767899	27	2.3	26	83	5	77	39	3	6	50	1.45
10767851--10767902	27	1.9	27	92	0	86	32	3	7	55	1.46
10767938--10768008	36	1.9	37	83	8	92	35	8	8	47	1.64
10768273--10768467	22	8.9	22	75	2	131	35	5	9	48	1.60
10768288--10768453	44	3.8	44	78	3	163	36	6	9	47	1.63
10768308--10768467	66	2.4	66	80	4	162	35	6	10	48	1.63
10768308--10768493	44	4.2	44	78	6	146	36	5	10	47	1.62
10768510--10768586	11	7.0	11	75	15	61	48	14	0	37	1.44
10768513--10768586	22	3.4	22	92	0	121	47	13	0	39	1.43
10768712--10768745	16	2.2	15	89	5	50	32	5	5	55	1.48
10769421--10769590	64	2.7	64	80	6	159	41	11	13	34	1.80
10769456--10769590	64	2.1	65	84	1	173	42	10	14	32	1.80
10770996--10771344	124	2.8	124	82	5	404	41	13	12	32	1.82
10772387--10772421	18	2.0	18	88	5	54	20	5	5	68	1.31
10772983--10773071	43	2.1	43	85	4	117	40	7	3	48	1.49
10773034--10773077	22	2.0	23	90	4	72	40	6	0	52	1.28
10773041--10773103	27	2.3	26	78	13	65	42	7	3	46	1.49
10773513--10773560	24	2.0	24	87	0	69	41	12	2	43	1.54
10773498--10773595	22	4.4	22	71	14	65	41	10	5	42	1.60
10773718--10773821	22	4.9	22	74	9	72	37	6	5	50	1.53
10773762--10773821	19	3.0	19	73	17	59	33	6	6	53	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10774080--10774170	35	2.7	33	77	14	87	40	9	1	48	1.44
10774128--10774308	22	8.3	22	70	4	89	37	8	3	49	1.52
10774140--10774224	44	1.9	44	85	0	116	41	9	2	47	1.49
10774353--10774423	22	3.2	21	78	4	70	33	9	4	52	1.54
10774340--10774424	44	1.9	44	83	4	109	36	9	5	48	1.60
10774720--10774746	9	3.0	9	100	0	54	55	0	0	44	0.99
10775095--10775381	146	2.0	146	84	4	373	35	12	8	44	1.72
10776849--10776914	32	2.1	30	83	5	78	45	3	0	51	1.16
10783430--10783548	15	7.9	15	70	17	70	20	1	30	47	1.60
10783430--10783593	16	10.7	16	71	10	121	20	1	29	48	1.58
10783430--10783593	31	5.4	30	74	13	111	20	1	29	48	1.58
10787694--10787736	18	2.4	18	88	7	61	44	6	9	39	1.64
10788301--10788337	3	12.3	3	100	0	74	32	0	0	67	0.91
10788598--10788626	15	1.9	15	100	0	58	27	10	13	48	1.75
10789148--10789232	5	16.6	5	72	18	68	18	4	0	76	0.96
10794626--10794655	2	15.0	2	92	0	51	53	0	0	46	1.00
10798489--10798521	11	2.8	12	86	9	50	42	0	0	57	0.98
10798584--10798665	33	2.5	34	75	15	91	43	0	1	54	1.07
10804251--10804345	50	1.9	50	97	0	181	25	17	25	31	1.97
10805242--10805275	10	3.4	10	92	8	52	0	29	0	70	0.87
10809413--10809469	14	3.8	16	77	15	68	43	0	0	56	0.99
10809415--10809464	16	3.5	14	83	8	57	44	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10809439--10809488	20	2.5	21	87	6	77	46	0	0	54	1.00
10810726--10810762	3	12.3	3	100	0	74	67	0	0	32	0.91
10811242--10811266	2	12.5	2	100	0	50	52	0	0	48	1.00
10814953--10815003	24	2.2	22	86	6	66	82	9	0	7	0.85
10825881--10825928	23	2.1	23	84	7	62	25	4	12	58	1.52
10830347--10830426	32	2.5	34	88	10	123	17	10	6	66	1.42
10831220--10831296	26	2.9	26	86	1	100	44	1	7	46	1.40
10831299--10831368	19	3.8	19	73	17	58	50	0	0	50	1.00
10831474--10831542	26	3.0	21	69	25	50	43	2	5	47	1.42
10831643--10831708	18	3.8	18	75	16	68	46	1	0	51	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84