genome.fa.s157.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  47  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10831627--10831708	36	2.2	36	85	10	105	50	1	0	48	1.08
10831653--10831748	39	2.5	39	76	10	97	45	2	1	51	1.20
10831746--10831810	24	2.7	25	76	7	71	49	3	4	43	1.39
10832028--10832065	20	2.0	20	89	5	60	50	0	0	50	1.00
10832211--10832257	22	2.1	22	92	0	76	34	6	6	53	1.52
10833164--10833419	128	2.0	128	98	0	494	33	18	15	32	1.93
10835849--10835875	8	3.4	8	100	0	54	25	11	25	37	1.89
10837636--10837681	14	3.4	14	87	3	67	54	0	0	45	0.99
10839535--10839560	13	2.0	13	100	0	52	15	7	7	69	1.35
10849947--10849971	1	25.0	1	100	0	50	100	0	0	0	0.00
10856485--10856525	2	21.0	2	90	5	66	0	48	2	48	1.14
10860427--10860859	232	1.9	225	82	6	520	39	7	6	46	1.59
10860980--10861018	15	2.7	15	85	14	55	33	0	2	64	1.08
10861027--10861060	14	2.4	14	90	0	50	44	2	0	52	1.16
10861045--10861092	23	2.1	23	84	0	60	43	4	2	50	1.33
10862707--10862765	29	2.0	29	87	6	84	55	1	0	42	1.09
10862879--10862933	14	3.5	16	69	20	53	38	0	0	61	0.96
10862876--10862917	16	2.5	17	80	3	50	42	0	0	57	0.99
10864785--10864863	40	2.0	40	100	0	158	27	16	12	43	1.84
10872845--10872889	13	2.9	16	75	25	51	44	6	2	46	1.42
10872958--10873013	28	2.0	28	82	6	69	58	7	0	33	1.25
10872408--10873392	325	3.0	329	90	4	1485	46	7	5	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10873177--10873201	13	1.9	13	100	0	50	48	0	0	52	1.00
10873177--10873211	17	2.1	17	88	0	52	48	2	2	45	1.32
10873195--10873239	23	2.0	23	86	0	63	42	4	2	51	1.34
10873383--10873448	12	5.1	13	68	14	55	40	0	0	59	0.98
10877505--10877555	20	2.5	21	90	3	77	54	0	3	41	1.19
10877505--10877564	20	3.0	20	85	7	59	56	0	3	40	1.16
10878026--10878137	30	4.0	30	75	19	143	28	16	20	34	1.94
10878016--10878121	51	2.1	51	98	0	203	31	14	21	33	1.93
10880812--10880860	14	3.5	14	78	8	55	46	32	0	20	1.51
10882465--10882529	19	3.3	19	77	8	67	36	24	0	38	1.56
10882468--10882511	21	2.2	20	87	4	61	36	25	0	38	1.56
10888827--10888856	2	15.0	2	92	0	51	50	3	0	46	1.18
10890711--10890768	30	1.9	31	92	3	100	55	3	0	41	1.17
10891620--10891733	17	6.7	17	79	9	117	34	18	21	25	1.96
10891631--10891729	34	2.8	35	92	3	155	35	18	21	25	1.95
10895156--10895214	28	2.1	28	90	0	91	66	3	0	30	1.08
10901041--10901114	37	2.0	37	100	0	148	35	13	18	32	1.90
10902238--10902295	17	3.4	17	87	0	62	37	0	6	55	1.27
10903215--10903239	12	2.1	12	100	0	50	56	0	0	44	0.99
10904903--10904942	18	2.2	19	86	4	55	57	2	32	7	1.40
10918808--10918852	23	1.9	23	81	4	54	40	2	11	46	1.52
10918885--10919234	61	5.9	58	79	8	330	38	3	4	54	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10918970--10919235	29	9.0	30	62	15	90	38	3	2	55	1.31
10918841--10919237	57	6.8	56	76	10	325	38	3	5	52	1.39
10919197--10919253	24	2.4	24	77	8	64	36	0	0	63	0.95
10919288--10919322	18	1.9	18	100	0	70	77	5	11	5	1.12
10924580--10924613	14	2.3	15	90	5	52	8	0	5	85	0.75
10925038--10925120	17	5.2	16	72	22	68	42	0	1	56	1.07
10925884--10925925	15	2.8	15	88	0	57	4	2	7	85	0.80
10926625--10926677	23	2.5	21	85	11	72	41	3	0	54	1.18
10927998--10928073	30	2.5	31	77	8	77	44	0	2	52	1.14
10928781--10928823	18	2.2	19	84	12	52	6	4	11	76	1.13
10935916--10935974	29	2.1	28	84	9	75	55	1	0	42	1.09
10936569--10936626	14	4.2	13	75	16	55	43	1	1	53	1.21
10945426--10945456	12	2.6	12	94	0	53	16	3	32	48	1.62
10947357--10947423	2	33.5	2	100	0	134	49	0	50	0	1.00
10950504--10950542	9	4.1	9	87	9	51	74	0	0	25	0.82
10950981--10951010	2	15.0	2	100	0	60	50	0	0	50	1.00
10952613--10952696	37	2.3	37	82	0	96	30	9	21	38	1.85
10953615--10953655	21	2.0	21	100	0	82	29	19	12	39	1.88
10962600--10962627	6	4.7	6	100	0	56	85	0	14	0	0.59
10970697--10970740	19	2.2	20	88	8	63	43	0	6	50	1.29
10970697--10970749	10	5.3	10	80	13	56	41	1	7	49	1.42
10971117--10971347	22	10.4	22	71	13	102	41	6	5	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10971171--10971708	44	12.5	43	70	14	159	39	7	4	47	1.53
10971171--10971335	66	2.5	67	81	3	181	40	7	5	47	1.54
10971349--10971707	22	16.4	22	72	7	167	39	7	4	47	1.53
10971521--10971641	43	2.8	43	82	3	145	41	7	1	49	1.41
10971404--10971716	44	7.2	43	73	8	206	38	7	4	49	1.50
10971831--10971888	22	2.7	22	83	2	64	41	10	3	44	1.55
10972051--10972102	21	2.4	22	75	9	54	38	17	0	44	1.49
10975183--10975220	18	2.1	19	95	5	69	65	0	2	31	1.06
10975197--10975293	15	6.8	15	71	19	66	61	2	2	34	1.19
10975197--10975328	70	1.9	71	90	1	212	57	2	2	37	1.24
10975316--10975417	51	2.0	51	88	0	150	39	5	6	48	1.54
10979991--10980016	10	2.6	10	100	0	52	53	0	0	46	1.00
10981374--10981415	20	2.1	20	82	8	50	16	2	7	73	1.15
10982206--10982268	23	2.6	23	82	12	74	14	1	11	73	1.18
10982696--10982863	53	3.3	51	79	11	173	52	6	13	27	1.64
10982689--10982879	102	1.9	103	85	5	271	51	7	13	28	1.67
10986323--10986368	21	2.2	21	84	0	56	80	2	17	0	0.81
10986680--10986713	17	2.0	17	88	0	50	61	0	29	8	1.26
10986731--10986757	7	3.9	7	100	0	54	59	0	25	14	1.36
10988055--10988190	46	3.0	46	88	0	191	40	8	13	38	1.74
10988090--10988170	21	3.7	21	70	12	72	39	7	13	39	1.73
10988108--10988190	25	3.5	25	74	12	93	42	9	13	34	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10988147--10988318	61	2.9	61	87	7	221	34	9	15	41	1.79
10988269--10988381	46	2.6	43	88	9	167	35	8	15	39	1.79
10988269--10988384	21	5.3	21	84	11	144	35	8	17	38	1.80
10988409--10988511	49	2.2	46	80	13	115	35	12	15	35	1.86
10988527--10988604	20	3.7	20	72	12	57	33	15	15	35	1.89
10988860--10988986	40	3.1	42	85	7	172	23	11	22	41	1.87
10988866--10988998	43	3.2	43	78	13	143	22	10	20	46	1.81
10989234--10989285	21	2.5	20	79	17	61	19	1	5	73	1.14
10989237--10989274	18	2.1	18	85	9	51	21	2	2	73	1.07
10990743--10990803	23	2.6	22	78	17	61	13	1	13	72	1.21
10991532--10991662	66	2.0	66	100	0	262	32	6	19	41	1.76
10993586--10993630	14	3.1	14	81	15	56	6	0	13	80	0.91
10994205--10994246	18	2.2	20	83	8	52	35	2	7	54	1.41
10994216--10994267	20	2.7	19	85	8	70	38	5	7	48	1.56
10994309--10994355	16	3.1	14	82	14	51	14	8	2	74	1.15
10999031--10999121	20	4.8	20	65	26	56	37	3	9	49	1.53
10999011--10999123	55	2.1	55	98	0	217	36	2	11	49	1.53
11003731--11003770	16	2.7	14	88	7	53	55	0	0	45	0.99
11003736--11003772	8	4.6	8	86	0	56	56	0	0	43	0.99
11003733--11003780	14	3.3	14	80	11	51	60	0	0	39	0.97
11003763--11003804	21	1.9	23	85	9	61	69	0	0	30	0.89
11005205--11005233	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11016959--11017322	187	1.9	187	91	2	597	36	14	11	37	1.83
11017102--11017980	333	2.6	333	89	1	1287	35	14	12	37	1.84
11021984--11022061	36	2.2	36	86	2	104	41	17	8	32	1.81
11038578--11038621	16	2.9	15	83	12	54	15	6	0	77	0.97
11038591--11038634	22	2.0	22	86	8	63	22	6	0	70	1.11
11038690--11038730	21	2.0	21	95	0	73	70	7	12	9	1.33
11040065--11040118	1	54.0	1	81	0	54	7	3	0	88	0.61
11040089--11040119	16	1.9	16	100	0	62	0	9	0	90	0.46
11040581--11040606	13	2.0	13	100	0	52	23	7	15	53	1.67
11040946--11040979	18	1.9	18	88	5	52	8	8	0	82	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84