genome.fa.s157.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  70  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15118509--15118556	25	1.9	25	87	8	71	25	6	12	56	1.59
15119486--15119519	15	2.3	15	85	5	52	64	8	0	26	1.22
15121882--15121929	20	2.4	20	85	0	60	70	2	14	12	1.25
15124490--15124533	24	1.9	22	86	9	61	65	4	18	11	1.40
15125400--15125645	133	1.8	134	80	8	293	47	8	12	31	1.72
15126858--15126893	18	2.0	18	100	0	72	16	27	11	44	1.82
15128439--15128463	12	2.1	12	100	0	50	48	0	24	28	1.52
15130748--15130879	66	2.0	66	100	0	264	33	10	10	45	1.73
15133839--15133872	16	2.1	16	100	0	68	32	0	23	44	1.54
15139887--15139921	11	3.2	11	87	0	52	14	0	5	80	0.89
15140425--15140563	63	2.2	63	94	1	244	54	8	12	23	1.66
15144587--15144629	21	2.0	21	86	8	61	74	0	18	6	1.04
15146098--15146196	22	4.4	22	79	10	112	35	9	15	40	1.79
15146086--15146156	25	3.0	25	79	8	85	39	11	14	35	1.81
15146086--15146175	47	1.9	47	86	4	128	36	11	13	38	1.80
15146111--15146152	13	3.3	13	77	16	52	40	11	11	35	1.79
15146613--15146806	42	4.7	42	79	7	173	24	11	15	47	1.80
15146606--15146829	42	5.4	41	77	9	161	25	11	16	47	1.79
15146839--15146863	13	1.9	13	100	0	50	8	16	20	56	1.65
15146902--15146927	10	2.6	10	100	0	52	92	7	0	0	0.39
15147862--15147936	17	4.4	17	70	20	59	13	1	10	74	1.13
15148441--15148573	60	2.2	61	86	6	191	57	8	11	23	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15150190--15150223	17	1.9	18	88	5	52	41	0	0	58	0.98
15151194--15151315	61	2.0	60	82	7	149	31	20	7	40	1.80
15151783--15151811	2	14.5	2	100	0	58	51	0	0	48	1.00
15152112--15152156	20	2.2	20	88	0	63	57	11	11	20	1.63
15155898--15155928	3	10.3	3	100	0	62	64	0	0	35	0.94
15155927--15155955	3	9.7	3	100	0	58	34	0	0	65	0.93
15158614--15158660	16	2.9	16	87	3	58	27	2	6	63	1.30
15158678--15158728	13	3.5	14	81	10	50	49	1	0	49	1.12
15161550--15161587	18	2.2	18	90	4	60	42	0	26	31	1.56
15162552--15162738	56	3.2	57	79	8	178	35	9	6	48	1.60
15162713--15162739	13	2.1	13	100	0	54	37	0	0	62	0.95
15164646--15164719	18	4.2	18	70	5	53	40	13	6	39	1.71
15164668--15164727	18	3.4	18	74	4	50	43	10	5	41	1.60
15164702--15164807	35	3.1	34	81	10	110	38	9	14	37	1.78
15164755--15164839	17	4.9	17	73	18	77	41	7	18	32	1.78
15164922--15164965	22	2.0	23	86	4	63	45	13	6	34	1.70
15164954--15165080	45	2.7	46	80	7	141	43	12	9	34	1.75
15165493--15165554	26	2.5	26	81	5	74	51	16	12	19	1.76
15170435--15170759	58	5.7	56	78	8	246	36	10	5	47	1.63
15175507--15175572	34	1.9	34	84	9	89	75	0	19	4	0.97
15178336--15178542	105	2.0	105	90	0	324	24	14	15	44	1.85
15178766--15178809	21	2.0	21	86	8	61	52	2	0	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15179492--15179533	21	2.0	21	90	0	66	54	2	0	42	1.13
15180348--15180406	12	5.1	12	74	12	52	54	1	1	42	1.20
15182827--15182867	20	2.0	21	85	4	57	58	0	29	12	1.34
15186226--15186262	16	2.2	17	95	4	67	37	0	8	54	1.30
15186260--15186311	8	6.1	8	75	20	52	15	1	3	78	0.98
15186428--15186786	174	2.0	173	87	6	506	28	10	14	46	1.77
15187619--15187662	17	2.6	17	86	10	56	40	0	4	54	1.21
15187683--15187712	11	2.7	11	89	0	51	46	0	0	53	1.00
15189207--15189237	16	1.9	16	93	0	53	41	3	19	35	1.67
15198861--15198891	2	15.5	2	100	0	62	51	0	0	48	1.00
15200901--15200933	2	16.5	2	100	0	66	48	0	0	51	1.00
15202820--15202881	3	20.3	3	83	3	79	58	6	0	35	1.24
15202820--15202878	12	4.8	12	91	2	91	57	6	0	35	1.25
15204526--15204568	17	2.5	17	88	0	59	20	4	2	72	1.14
15205256--15205362	48	2.2	48	83	3	133	38	17	14	28	1.90
15205286--15205446	50	3.3	49	81	6	166	35	18	13	32	1.90
15205765--15205851	23	3.8	23	80	8	97	31	14	19	34	1.92
15207574--15207838	142	1.9	141	83	2	343	25	18	8	47	1.76
15211672--15211720	20	2.6	18	75	15	53	4	22	0	73	1.00
15211682--15211719	21	1.9	20	89	10	60	5	23	0	71	1.07
15212510--15212553	19	2.5	17	85	14	54	6	11	2	79	1.01
15214599--15214635	3	12.3	3	100	0	74	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214710--15214734	5	5.0	5	100	0	50	60	0	0	40	0.97
15219078--15219501	193	2.2	191	81	9	461	37	9	6	46	1.62
15224529--15224569	21	2.0	21	95	0	73	60	12	0	26	1.31
15224557--15224622	23	3.0	22	84	8	80	50	4	9	36	1.55
15224565--15224634	23	3.0	23	82	0	86	44	5	10	40	1.62
15224601--15224885	65	4.4	67	79	8	270	41	12	9	37	1.75
15224630--15224869	130	1.8	131	82	2	313	41	13	9	35	1.76
15224792--15224938	21	6.8	21	66	15	68	41	11	8	38	1.73
15224685--15224911	42	5.3	42	72	9	129	41	12	9	36	1.75
15224629--15224901	64	4.2	64	77	8	216	41	12	9	36	1.75
15225063--15225144	32	2.5	32	86	2	110	45	14	12	28	1.81
15225209--15225288	31	2.6	31	78	4	81	51	11	11	26	1.71
15225233--15225410	86	2.1	87	82	5	218	47	7	11	33	1.68
15225434--15225524	23	3.9	23	77	1	92	42	9	10	36	1.73
15227177--15227214	14	2.5	16	83	12	53	5	18	0	76	0.97
15233906--15233935	8	3.6	8	91	8	51	63	13	10	13	1.52
15233908--15233936	9	3.3	9	95	4	51	68	10	10	10	1.39
15240682--15241094	203	2.0	203	93	0	711	37	24	9	28	1.86
15244782--15245617	278	3.0	278	99	0	1645	41	16	15	26	1.88
15249496--15249533	18	2.1	18	85	9	51	65	0	0	34	0.93
15252134--15252179	7	6.4	7	80	14	58	69	0	2	28	1.00
15252134--15252177	22	2.0	22	86	8	63	72	0	2	25	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15264292--15264335	22	2.0	22	95	0	79	43	13	11	31	1.80
15266043--15266081	16	2.5	16	83	4	53	17	7	5	69	1.32
15269214--15269257	22	2.0	22	95	0	79	43	13	11	31	1.80
15272906--15272964	25	2.4	25	86	5	77	40	18	27	13	1.88
15273109--15273152	22	2.0	22	95	0	79	43	13	11	31	1.80
15273820--15273850	4	7.8	4	100	0	62	25	0	0	74	0.82
15277580--15277651	35	2.1	35	92	5	119	41	4	8	45	1.53
15285130--15285174	16	2.9	15	80	9	54	24	13	20	42	1.87
15287839--15287931	30	3.1	30	87	3	125	40	3	18	37	1.67
15288852--15289145	151	1.9	151	100	0	588	45	8	17	28	1.77
15291355--15291659	18	17.6	18	73	15	225	55	2	1	40	1.22
15291383--15291660	15	17.6	15	67	22	135	54	2	1	41	1.23
15291369--15291661	50	5.7	51	83	10	237	55	2	1	40	1.22
15291428--15291546	29	4.4	27	69	23	81	55	1	2	40	1.23
15291355--15291588	117	2.0	117	81	6	278	55	2	1	40	1.22
15291416--15291587	33	5.1	33	73	13	118	54	1	2	41	1.23
15291416--15291659	35	7.0	37	72	18	150	54	2	2	41	1.23
15291734--15291786	16	3.4	15	80	12	54	47	0	1	50	1.12
15291703--15291786	32	2.4	35	77	13	86	46	1	2	50	1.22
15291913--15291946	14	2.4	14	95	0	59	35	0	2	61	1.11
15292340--15292431	47	2.0	47	91	4	150	43	13	5	38	1.66
15293394--15293425	11	2.8	12	86	13	50	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15293761--15293831	30	2.4	30	95	4	126	32	11	16	39	1.84
15293535--15294014	257	1.9	259	95	1	867	32	13	8	45	1.74
15293991--15294065	28	2.6	29	82	14	84	8	13	1	77	1.05
15294021--15294076	13	4.3	12	79	20	60	5	12	1	80	0.96
15293990--15294066	29	2.6	30	77	18	83	7	14	1	76	1.06
15294599--15294664	30	2.2	31	86	8	91	33	7	16	42	1.77
15295081--15295125	21	2.1	21	83	0	54	53	13	6	26	1.64
15299262--15299299	20	2.0	20	89	5	60	57	7	13	21	1.60
15302369--15302424	15	3.9	15	76	9	62	78	0	1	19	0.84
15302377--15302431	7	7.9	7	84	8	58	80	0	1	18	0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84