genome.fa.s157.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167982.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_24, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18142777

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   

This is table  79  of  84  ( 10046 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17085125--17085381	124	2.1	124	85	8	339	31	15	13	38	1.87
17085517--17085568	22	2.4	21	75	9	50	32	19	13	34	1.90
17085590--17085666	39	2.0	39	84	0	100	24	9	18	48	1.77
17091473--17091512	2	20.0	2	89	0	62	50	5	0	45	1.23
17091473--17091510	16	2.4	16	100	0	76	50	5	0	44	1.24
17095035--17095073	18	2.2	18	100	0	78	51	15	5	28	1.64
17096025--17096058	18	1.9	18	88	5	52	17	23	23	35	1.95
17097463--17097497	16	2.2	16	100	0	70	37	14	14	34	1.86
17100020--17100116	48	2.0	48	95	0	176	51	8	14	25	1.70
17101045--17101074	3	10.0	3	100	0	60	33	0	0	66	0.92
17101421--17101466	18	2.6	18	86	6	58	52	0	2	45	1.13
17101636--17101681	21	2.2	20	85	11	58	54	0	4	41	1.20
17101870--17101915	18	2.6	18	86	6	58	50	0	4	45	1.21
17104348--17104392	18	2.4	19	85	3	56	55	4	0	40	1.20
17104437--17104471	17	2.1	17	89	10	54	62	2	0	34	1.10
17116842--17116879	16	2.4	16	83	12	51	44	5	0	50	1.24
17124168--17124204	12	3.2	11	88	11	56	62	0	0	37	0.96
17131283--17131327	16	2.8	16	79	3	54	37	4	6	51	1.49
17131302--17131436	47	3.0	47	87	7	183	32	3	9	54	1.51
17131304--17131434	24	5.8	24	72	19	120	32	3	9	54	1.52
17131366--17131563	20	10.6	20	63	28	82	31	5	9	53	1.55
17131419--17131504	31	2.7	32	94	3	147	31	8	8	52	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17131482--17131526	23	2.0	23	91	4	74	28	6	6	57	1.50
17131504--17131654	32	4.7	32	90	0	221	31	3	9	55	1.50
17131688--17131733	24	1.9	24	90	0	74	26	6	10	56	1.58
17131415--17131709	151	2.0	150	86	2	403	31	5	8	54	1.53
17131687--17131749	20	3.2	20	81	4	56	30	6	7	55	1.54
17131687--17131793	24	4.3	24	68	13	63	28	6	10	54	1.59
17131965--17132026	16	3.6	16	72	12	52	33	3	11	51	1.54
17131962--17132024	18	3.4	18	71	18	58	34	3	11	50	1.54
17132144--17132192	17	3.1	16	83	11	66	24	6	16	53	1.66
17132145--17132230	31	3.0	30	70	22	85	25	6	17	50	1.71
17135102--17135147	9	4.9	9	83	5	56	84	0	15	0	0.62
17135102--17135150	10	4.6	10	80	14	62	85	0	14	0	0.59
17135103--17135142	17	2.2	19	82	13	57	85	0	15	0	0.61
17136937--17137077	36	3.9	36	81	2	142	34	7	13	44	1.73
17137139--17137185	18	2.6	18	89	0	76	25	6	17	51	1.69
17137176--17137222	18	2.6	18	80	12	51	27	17	19	36	1.93
17137226--17137261	18	2.0	18	88	0	54	33	11	13	41	1.80
17137260--17137326	32	2.1	32	82	0	80	28	20	8	41	1.83
17137635--17138120	43	11.6	42	74	13	317	29	13	17	39	1.88
17137794--17138114	85	3.8	85	81	6	305	30	13	17	38	1.89
17137795--17138120	128	2.5	127	80	8	349	30	13	17	37	1.89
17138361--17138406	16	2.8	16	86	6	56	21	0	6	71	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17139045--17139121	17	4.3	17	76	16	75	33	5	6	54	1.48
17139075--17139205	21	5.9	21	72	17	95	32	3	9	55	1.47
17139080--17139337	44	5.9	43	69	19	142	31	4	8	55	1.48
17139075--17139205	24	5.8	24	72	19	102	32	3	9	55	1.47
17139080--17139212	47	3.0	45	80	13	136	30	3	9	57	1.45
17139208--17139251	23	2.0	23	95	4	81	29	4	9	56	1.50
17139287--17139329	20	2.2	20	91	0	68	37	6	0	55	1.27
17139270--17139332	20	2.8	23	69	16	60	36	6	0	57	1.24
17139543--17139642	18	5.5	18	70	17	73	34	5	11	50	1.60
17139682--17139901	69	3.2	66	84	9	223	28	5	14	52	1.63
17139754--17139880	12	11.0	12	68	17	81	25	5	15	52	1.64
17139730--17139901	34	5.0	35	92	2	269	26	5	15	53	1.62
17139799--17139887	17	5.2	17	70	20	78	26	5	14	52	1.64
17143489--17143546	31	1.9	30	92	3	98	51	6	15	25	1.68
17143489--17143534	14	2.9	17	78	18	62	52	6	17	23	1.68
17143492--17143546	14	3.8	13	78	19	56	50	7	14	27	1.69
17145343--17145393	24	2.1	24	89	7	77	47	9	17	25	1.78
17147462--17147492	12	2.6	12	94	0	53	64	9	0	25	1.24
17147782--17147902	16	7.7	15	76	13	91	30	1	15	52	1.53
17147814--17147902	31	2.8	31	81	5	108	30	1	14	53	1.48
17147827--17147937	48	2.3	46	77	14	109	31	0	15	52	1.49
17148309--17148462	78	2.0	78	100	0	308	40	12	22	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17152751--17152819	29	2.4	29	85	0	93	28	20	14	36	1.92
17154477--17154545	29	2.4	29	87	0	93	26	14	13	46	1.81
17155283--17155308	12	2.2	12	100	0	52	46	15	15	23	1.83
17158772--17158833	23	2.8	21	76	13	61	62	0	6	30	1.20
17159310--17159341	2	16.0	2	93	0	55	50	3	46	0	1.17
17160103--17160127	4	6.2	4	100	0	50	24	0	0	76	0.80
17160260--17160309	23	2.2	23	82	7	57	20	0	4	76	0.95
17161004--17161035	2	16.0	2	100	0	64	50	0	50	0	1.00
17168760--17168844	42	2.0	42	97	0	161	40	12	11	35	1.80
17168902--17168930	14	2.0	15	93	6	51	13	13	24	48	1.79
17170401--17170444	22	2.0	22	95	0	79	43	13	11	31	1.80
17174301--17174344	22	2.0	22	95	0	79	43	13	11	31	1.80
17175786--17175830	21	2.1	21	95	0	81	33	6	15	44	1.73
17178664--17178692	2	14.5	2	100	0	58	0	0	48	51	1.00
17181035--17181073	2	19.5	2	100	0	78	48	0	0	51	1.00
17191523--17191552	15	2.0	15	93	0	51	56	0	0	43	0.99
17195167--17195207	21	2.0	21	95	0	73	34	19	2	43	1.64
17195235--17195276	15	2.7	16	88	7	68	69	0	9	21	1.17
17200688--17200737	23	2.2	22	86	10	66	48	16	8	28	1.74
17203601--17203651	22	2.3	23	80	10	61	45	3	0	50	1.20
17203634--17203679	24	2.0	23	87	12	67	47	0	0	52	1.00
17203998--17204027	15	2.0	15	93	0	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17210870--17210959	46	2.0	46	91	4	146	28	22	10	38	1.86
17211108--17211140	17	1.9	17	100	0	66	27	30	6	36	1.81
17212517--17212549	16	1.9	17	88	11	50	60	6	0	33	1.21
17212865--17213210	173	2.0	174	83	7	443	43	6	7	42	1.57
17213817--17213859	19	2.2	20	91	4	70	37	0	2	60	1.10
17213826--17213867	10	4.2	10	78	9	50	38	0	2	59	1.10
17213825--17213867	19	2.3	19	83	0	59	39	0	2	58	1.11
17214096--17214125	14	2.1	14	93	0	51	63	0	0	36	0.95
17215368--17215399	13	2.4	13	94	5	55	31	0	0	68	0.90
17215368--17215399	7	4.7	7	92	7	57	31	0	0	68	0.90
17217744--17217793	24	2.1	23	85	3	64	32	2	2	64	1.16
17218284--17218326	19	2.3	18	84	4	59	25	2	0	72	0.97
17219411--17219476	25	2.7	26	74	9	66	24	3	4	68	1.23
17219461--17219536	11	6.4	12	73	13	59	40	0	1	57	1.07
17219461--17219539	23	3.3	24	81	13	101	40	0	1	58	1.06
17220202--17220240	18	2.2	18	85	0	51	7	10	10	71	1.30
17225647--17225671	2	12.5	2	100	0	50	48	0	0	52	1.00
17226261--17226339	34	2.3	34	84	4	97	46	6	2	44	1.42
17226423--17226469	26	1.9	24	83	12	60	59	0	2	38	1.09
17228816--17228884	30	2.3	29	80	7	84	30	31	2	34	1.73
17230566--17230597	3	10.7	3	93	0	55	37	0	62	0	0.95
17230885--17230925	2	21.0	2	90	5	66	48	2	0	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17236543--17236573	2	15.5	2	100	0	62	48	0	0	51	1.00
17237849--17237907	30	2.0	30	86	0	82	50	6	5	37	1.51
17242197--17242229	17	1.9	17	93	0	57	54	12	9	24	1.66
17256193--17256220	2	14.0	2	100	0	56	0	0	50	50	1.00
17258927--17258962	19	1.9	18	88	5	54	63	0	2	33	1.08
17265611--17265636	3	8.7	3	100	0	52	65	0	0	34	0.93
17268941--17269077	69	2.0	69	97	0	256	24	14	17	43	1.87
17269755--17269893	70	2.0	71	90	4	219	39	14	10	35	1.80
17271920--17271948	14	2.0	15	93	6	51	13	3	20	62	1.46
17272668--17272705	14	2.6	15	91	4	60	31	26	18	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84